RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 TCRBV4S1A1TA0A5B7 111 aa13.71□□□□□ -0.21
SHMT2-225ENST00000556798 CD83Q01151 205 aa13.71□□□□□ -0.21
SHMT2-225ENST00000556798 SURF2Q15527 256 aaPredicted RBP13.71□□□□□ -0.21
SHMT2-225ENST00000556798 TCTEX1D1Q8N7M0 179 aa13.71□□□□□ -0.21
SHMT2-225ENST00000556798 LFNGQ8NES3 379 aa13.71□□□□□ -0.21
SHMT2-225ENST00000556798 SGMS2Q8NHU3 365 aa13.71□□□□□ -0.21
SHMT2-225ENST00000556798 TP53RKQ96S44 253 aa13.71□□□□□ -0.21
SHMT2-225ENST00000556798 GON7Q9BXV9 100 aa13.71□□□□□ -0.21
SHMT2-225ENST00000556798 TMEM140Q9NV12 185 aa13.71□□□□□ -0.21
SHMT2-225ENST00000556798 WNK1Q9H4A3 2382 aa13.7□□□□□ -0.22
SHMT2-225ENST00000556798 TRAV3A0A0B4J244 114 aa13.7□□□□□ -0.22
SHMT2-225ENST00000556798 C3orf85A0A1B0GTC6 90 aa13.7□□□□□ -0.22
SHMT2-225ENST00000556798 A0A1W2PN81 502 aa13.7□□□□□ -0.22
SHMT2-225ENST00000556798 ADARB2-AS1A8MUL3 147 aa13.7□□□□□ -0.22
SHMT2-225ENST00000556798 H0Y980 276 aa13.7□□□□□ -0.22
SHMT2-225ENST00000556798 CREBL2O60519 120 aaPredicted RBP13.7□□□□□ -0.22
SHMT2-225ENST00000556798 KRASP01116 189 aa13.7□□□□□ -0.22
SHMT2-225ENST00000556798 APELAP0DMC3 54 aa13.7□□□□□ -0.22
SHMT2-225ENST00000556798 G6PCP35575 357 aa13.7□□□□□ -0.22
SHMT2-225ENST00000556798 CHRNA7P36544 502 aa13.7□□□□□ -0.22
SHMT2-225ENST00000556798 CRIP2P52943 208 aaPredicted RBP13.7□□□□□ -0.22
SHMT2-225ENST00000556798 ERVK-16P61578 105 aa13.7□□□□□ -0.22
SHMT2-225ENST00000556798 POU2AF1Q16633 256 aa13.7□□□□□ -0.22
SHMT2-225ENST00000556798 SP6Q3SY56 376 aa13.7□□□□□ -0.22
SHMT2-225ENST00000556798 C19orf54Q5BKX5 351 aa13.7□□□□□ -0.22
SHMT2-225ENST00000556798 UNQ5815/PRO19632Q6UWF5 114 aa13.7□□□□□ -0.22
SHMT2-225ENST00000556798 MMD2Q8IY49 270 aa13.7□□□□□ -0.22
SHMT2-225ENST00000556798 TMEM167AQ8TBQ9 72 aa13.7□□□□□ -0.22
SHMT2-225ENST00000556798 SRSF12Q8WXF0 261 aaKnown RBP13.7□□□□□ -0.22
SHMT2-225ENST00000556798 DEDD2Q8WXF8 326 aa13.7□□□□□ -0.22
SHMT2-225ENST00000556798 S100ZQ8WXG8 99 aa13.7□□□□□ -0.22
SHMT2-225ENST00000556798 MARCH11A6NNE9 402 aa13.69□□□□□ -0.22
SHMT2-225ENST00000556798 SOX15O60248 233 aa13.69□□□□□ -0.22
SHMT2-225ENST00000556798 ACTL6BO94805 426 aa13.69□□□□□ -0.22
SHMT2-225ENST00000556798 TSPAN15O95858 294 aa13.69□□□□□ -0.22
SHMT2-225ENST00000556798 IGKV1-39P01597 117 aa13.69□□□□□ -0.22
SHMT2-225ENST00000556798 IGKV1D-39P04432 117 aa13.69□□□□□ -0.22
SHMT2-225ENST00000556798 MYOD1P15172 320 aa13.69□□□□□ -0.22
SHMT2-225ENST00000556798 PPIFP30405 207 aaKnown RBP13.69□□□□□ -0.22
SHMT2-225ENST00000556798 CCR6P51684 374 aa13.69□□□□□ -0.22
SHMT2-225ENST00000556798 TEX38Q6PEX7 206 aa13.69□□□□□ -0.22
SHMT2-225ENST00000556798 NDUFA11Q86Y39 141 aa13.69□□□□□ -0.22
SHMT2-225ENST00000556798 ADAD2Q8NCV1 583 aaKnown RBP13.69□□□□□ -0.22
SHMT2-225ENST00000556798 CASTOR1Q8WTX7 329 aa13.69□□□□□ -0.22
SHMT2-225ENST00000556798 TMEM230Q96A57 120 aa13.69□□□□□ -0.22
SHMT2-225ENST00000556798 PHB2Q99623 299 aa13.69□□□□□ -0.22
SHMT2-225ENST00000556798 AIFM2Q9BRQ8 373 aa13.69□□□□□ -0.22
SHMT2-225ENST00000556798 NAA60Q9H7X0 242 aa13.69□□□□□ -0.22
SHMT2-225ENST00000556798 BET1LQ9NYM9 111 aa13.69□□□□□ -0.22
SHMT2-225ENST00000556798 NUBP2Q9Y5Y2 271 aa13.69□□□□□ -0.22
SHMT2-225ENST00000556798 TEX13DA0A0J9YY54 714 aaPredicted RBP13.68□□□□□ -0.22
SHMT2-225ENST00000556798 M0QZ24 198 aa13.68□□□□□ -0.22
SHMT2-225ENST00000556798 IGHG4P01861 327 aa13.68□□□□□ -0.22
SHMT2-225ENST00000556798 OPN1MWP04001 364 aa13.68□□□□□ -0.22
SHMT2-225ENST00000556798 RPLP1P05386 114 aaKnown RBP13.68□□□□□ -0.22
SHMT2-225ENST00000556798 SERPINE2P07093 398 aa13.68□□□□□ -0.22
SHMT2-225ENST00000556798 OR5AC1P0C628 307 aa13.68□□□□□ -0.22
SHMT2-225ENST00000556798 OPN1MW2P0DN77 364 aa13.68□□□□□ -0.22
SHMT2-225ENST00000556798 OPN1MW3P0DN78 364 aa13.68□□□□□ -0.22
SHMT2-225ENST00000556798 FOXE3Q13461 319 aa13.68□□□□□ -0.22
SHMT2-225ENST00000556798 C2orf68Q2NKX9 166 aa13.68□□□□□ -0.22
SHMT2-225ENST00000556798 COMMD1Q8N668 190 aa13.68□□□□□ -0.22
SHMT2-225ENST00000556798 MINDY2Q8NBR6 621 aa13.68□□□□□ -0.22
SHMT2-225ENST00000556798 FAM212BQ9NTI7 297 aaPredicted RBP13.68□□□□□ -0.22
SHMT2-225ENST00000556798 FOXA2Q9Y261 457 aaPredicted RBP13.68□□□□□ -0.22
SHMT2-225ENST00000556798 VWFP04275 2813 aa13.68□□□□□ -0.22
SHMT2-225ENST00000556798 TRRAPQ9Y4A5 3859 aa13.67□□□□□ -0.22
SHMT2-225ENST00000556798 MSGN1A6NI15 193 aa13.67□□□□□ -0.22
SHMT2-225ENST00000556798 UPK2O00526 184 aa13.67□□□□□ -0.22
SHMT2-225ENST00000556798 PF4V1P10720 104 aa13.67□□□□□ -0.22
SHMT2-225ENST00000556798 RPL8P62917 257 aaKnown RBP13.67□□□□□ -0.22
SHMT2-225ENST00000556798 TMEM267Q0VDI3 215 aaPredicted RBP13.67□□□□□ -0.22
SHMT2-225ENST00000556798 AKIRIN2Q53H80 203 aa13.67□□□□□ -0.22
SHMT2-225ENST00000556798 CXorf66Q5JRM2 361 aaPredicted RBP13.67□□□□□ -0.22
SHMT2-225ENST00000556798 ASPHD1Q5U4P2 390 aa13.67□□□□□ -0.22
SHMT2-225ENST00000556798 C18orf65Q6ZTR6 163 aa13.67□□□□□ -0.22
SHMT2-225ENST00000556798 TMED4Q7Z7H5 227 aa13.67□□□□□ -0.22
SHMT2-225ENST00000556798 OR4A5Q8NH83 315 aa13.67□□□□□ -0.22
SHMT2-225ENST00000556798 SCGB3A2Q96PL1 93 aa13.67□□□□□ -0.22
SHMT2-225ENST00000556798 CCDC32Q9BV29 185 aa13.67□□□□□ -0.22
SHMT2-225ENST00000556798 KLK15Q9H2R5 256 aa13.67□□□□□ -0.22
SHMT2-225ENST00000556798 TSSC4Q9Y5U2 329 aaPredicted RBP13.67□□□□□ -0.22
SHMT2-225ENST00000556798 NAP1L6A6NFF2 107 aa13.66□□□□□ -0.22
SHMT2-225ENST00000556798 CRYM-AS1A6NIL9 109 aa13.66□□□□□ -0.22
SHMT2-225ENST00000556798 IGLV1-40P01703 118 aa13.66□□□□□ -0.22
SHMT2-225ENST00000556798 ELANEP08246 267 aa13.66□□□□□ -0.22
SHMT2-225ENST00000556798 IL6RP08887 468 aaPredicted RBP13.66□□□□□ -0.22
SHMT2-225ENST00000556798 OR9G9P0C7N8 305 aa13.66□□□□□ -0.22
SHMT2-225ENST00000556798 AKR1C4P17516 323 aa13.66□□□□□ -0.22
SHMT2-225ENST00000556798 HLA-GP17693 338 aa13.66□□□□□ -0.22
SHMT2-225ENST00000556798 PSMB8P28062 276 aa13.66□□□□□ -0.22
SHMT2-225ENST00000556798 BTCP35070 178 aa13.66□□□□□ -0.22
SHMT2-225ENST00000556798 RPL27AP46776 148 aaKnown RBP13.66□□□□□ -0.22
SHMT2-225ENST00000556798 RPL23AP62750 156 aaKnown RBP13.66□□□□□ -0.22
SHMT2-225ENST00000556798 ZNF846Q147U1 533 aa13.66□□□□□ -0.22
SHMT2-225ENST00000556798 TRIM16LQ309B1 348 aa13.66□□□□□ -0.22
SHMT2-225ENST00000556798 OR5T1Q8NG75 326 aa13.66□□□□□ -0.22
SHMT2-225ENST00000556798 SEC22AQ96IW7 307 aa13.66□□□□□ -0.22
SHMT2-225ENST00000556798 FYTTD1Q96QD9 318 aaKnown RBP13.66□□□□□ -0.22
SHMT2-225ENST00000556798 WDR12Q9GZL7 423 aaKnown RBP13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 90.1 ms