RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 LINC00527Q9UJ94 153 aa11.21□□□□□ -0.62
SHMT2-217ENST00000555116 TRRAPQ9Y4A5 3859 aa11.21□□□□□ -0.62
SHMT2-217ENST00000555116 KCNAB3O43448 404 aa11.2□□□□□ -0.62
SHMT2-217ENST00000555116 RPS16P62249 146 aaKnown RBP11.2□□□□□ -0.62
SHMT2-217ENST00000555116 RPL30P62888 115 aaKnown RBP11.2□□□□□ -0.62
SHMT2-217ENST00000555116 PPP1R1AQ13522 171 aa11.2□□□□□ -0.62
SHMT2-217ENST00000555116 PSG5Q15238 335 aa11.2□□□□□ -0.62
SHMT2-217ENST00000555116 MSMO1Q15800 293 aa11.2□□□□□ -0.62
SHMT2-217ENST00000555116 TMEM177Q53S58 311 aa11.2□□□□□ -0.62
SHMT2-217ENST00000555116 TCTEX1D4Q5JR98 221 aa11.2□□□□□ -0.62
SHMT2-217ENST00000555116 FOXRED2Q8IWF2 684 aa11.2□□□□□ -0.62
SHMT2-217ENST00000555116 ADAD2Q8NCV1 583 aaKnown RBP11.2□□□□□ -0.62
SHMT2-217ENST00000555116 SECTM1Q8WVN6 248 aa11.2□□□□□ -0.62
SHMT2-217ENST00000555116 ASB13Q8WXK3 278 aa11.2□□□□□ -0.62
SHMT2-217ENST00000555116 FLYWCH2Q96CP2 140 aaKnown RBP11.2□□□□□ -0.62
SHMT2-217ENST00000555116 TSNAXQ99598 290 aaKnown RBP11.2□□□□□ -0.62
SHMT2-217ENST00000555116 FBXL15Q9H469 300 aa11.2□□□□□ -0.62
SHMT2-217ENST00000555116 C9orf170A2RU37 121 aa11.19□□□□□ -0.62
SHMT2-217ENST00000555116 AP4M1O00189 453 aa11.19□□□□□ -0.62
SHMT2-217ENST00000555116 SPDEFO95238 335 aa11.19□□□□□ -0.62
SHMT2-217ENST00000555116 IGLV2-23P01705 113 aa11.19□□□□□ -0.62
SHMT2-217ENST00000555116 RRASP10301 218 aa11.19□□□□□ -0.62
SHMT2-217ENST00000555116 HTR2BP41595 481 aa11.19□□□□□ -0.62
SHMT2-217ENST00000555116 FXYD4P59646 89 aa11.19□□□□□ -0.62
SHMT2-217ENST00000555116 RTL8BQ17RB0 113 aa11.19□□□□□ -0.62
SHMT2-217ENST00000555116 LIN54Q6MZP7 749 aa11.19□□□□□ -0.62
SHMT2-217ENST00000555116 STPG2Q8N412 459 aa11.19□□□□□ -0.62
SHMT2-217ENST00000555116 CITED2Q99967 270 aaPredicted RBP11.19□□□□□ -0.62
SHMT2-217ENST00000555116 SLC5A7Q9GZV3 580 aa11.19□□□□□ -0.62
SHMT2-217ENST00000555116 MGAM2Q2M2H8 2515 aa11.19□□□□□ -0.62
SHMT2-217ENST00000555116 IGHV7-81A0A0B4J1V7 117 aa11.19□□□□□ -0.62
SHMT2-217ENST00000555116 PSMB11A5LHX3 300 aa11.19□□□□□ -0.62
SHMT2-217ENST00000555116 ADARB2-AS1A8MUL3 147 aa11.19□□□□□ -0.62
SHMT2-217ENST00000555116 FCN1O00602 326 aa11.19□□□□□ -0.62
SHMT2-217ENST00000555116 AKR1C4P17516 323 aa11.19□□□□□ -0.62
SHMT2-217ENST00000555116 ZNF329Q86UD4 541 aa11.19□□□□□ -0.62
SHMT2-217ENST00000555116 LHFPL1Q86WI0 220 aa11.19□□□□□ -0.62
SHMT2-217ENST00000555116 TMEM17Q86X19 198 aa11.19□□□□□ -0.62
SHMT2-217ENST00000555116 MITD1Q8WV92 249 aa11.19□□□□□ -0.62
SHMT2-217ENST00000555116 MOB3AQ96BX8 217 aa11.19□□□□□ -0.62
SHMT2-217ENST00000555116 HSD17B10Q99714 261 aaKnown RBP11.19□□□□□ -0.62
SHMT2-217ENST00000555116 ZNF2Q9BSG1 426 aaPredicted RBP11.19□□□□□ -0.62
SHMT2-217ENST00000555116 ZNF580Q9UK33 172 aa11.19□□□□□ -0.62
SHMT2-217ENST00000555116 GPR132Q9UNW8 380 aa11.19□□□□□ -0.62
SHMT2-217ENST00000555116 PKD1L1Q8TDX9 2849 aa11.18□□□□□ -0.62
SHMT2-217ENST00000555116 M0QZ24 198 aa11.18□□□□□ -0.62
SHMT2-217ENST00000555116 IGF1P05019 195 aa11.18□□□□□ -0.62
SHMT2-217ENST00000555116 CRYGBP07316 175 aa11.18□□□□□ -0.62
SHMT2-217ENST00000555116 CXCL2P19875 107 aa11.18□□□□□ -0.62
SHMT2-217ENST00000555116 LGALS7P47929 136 aa11.18□□□□□ -0.62
SHMT2-217ENST00000555116 TAS2R31P59538 309 aa11.18□□□□□ -0.62
SHMT2-217ENST00000555116 HERV-K104P61576 105 aa11.18□□□□□ -0.62
SHMT2-217ENST00000555116 AADACL3Q5VUY0 350 aa11.18□□□□□ -0.62
SHMT2-217ENST00000555116 TEX261Q6UWH6 196 aa11.18□□□□□ -0.62
SHMT2-217ENST00000555116 ZNF66Q6ZN08 573 aa11.18□□□□□ -0.62
SHMT2-217ENST00000555116 KCTD9Q7L273 389 aa11.18□□□□□ -0.62
SHMT2-217ENST00000555116 ZBTB34Q8NCN2 500 aa11.18□□□□□ -0.62
SHMT2-217ENST00000555116 OR5M8Q8NGP6 311 aa11.18□□□□□ -0.62
SHMT2-217ENST00000555116 GPHA2Q96T91 129 aa11.18□□□□□ -0.62
SHMT2-217ENST00000555116 METTL1Q9UBP6 276 aaKnown RBP11.18□□□□□ -0.62
SHMT2-217ENST00000555116 U3KQ87 197 aa11.18□□□□□ -0.62
SHMT2-217ENST00000555116 VWFP04275 2813 aa11.17□□□□□ -0.62
SHMT2-217ENST00000555116 SRRM4A7MD48 611 aaKnown RBP11.17□□□□□ -0.62
SHMT2-217ENST00000555116 HMSDA8MTL9 139 aa11.17□□□□□ -0.62
SHMT2-217ENST00000555116 SLC25A17O43808 307 aa11.17□□□□□ -0.62
SHMT2-217ENST00000555116 SNAPC5O75971 98 aa11.17□□□□□ -0.62
SHMT2-217ENST00000555116 MPC2O95563 127 aa11.17□□□□□ -0.62
SHMT2-217ENST00000555116 DUS4LO95620 317 aaKnown RBP11.17□□□□□ -0.62
SHMT2-217ENST00000555116 CRYZL1O95825 349 aa11.17□□□□□ -0.62
SHMT2-217ENST00000555116 TSPAN15O95858 294 aa11.17□□□□□ -0.62
SHMT2-217ENST00000555116 HLA-GP17693 338 aa11.17□□□□□ -0.62
SHMT2-217ENST00000555116 BRWD1-AS2P59051 145 aa11.17□□□□□ -0.62
SHMT2-217ENST00000555116 NDUFA11Q86Y39 141 aa11.17□□□□□ -0.62
SHMT2-217ENST00000555116 HARBI1Q96MB7 349 aa11.17□□□□□ -0.62
SHMT2-217ENST00000555116 SCGB3A2Q96PL1 93 aa11.17□□□□□ -0.62
SHMT2-217ENST00000555116 FXYD6Q9H0Q3 95 aa11.17□□□□□ -0.62
SHMT2-217ENST00000555116 C5orf66Q9H5L9 145 aa11.17□□□□□ -0.62
SHMT2-217ENST00000555116 TPSG1Q9NRR2 321 aa11.17□□□□□ -0.62
SHMT2-217ENST00000555116 SHOXO15266 292 aa11.17□□□□□ -0.62
SHMT2-217ENST00000555116 FCGR3BO75015 233 aa11.17□□□□□ -0.62
SHMT2-217ENST00000555116 VAMP1P23763 118 aa11.17□□□□□ -0.62
SHMT2-217ENST00000555116 GNRHRP30968 328 aa11.17□□□□□ -0.62
SHMT2-217ENST00000555116 CX3CL1P78423 397 aa11.17□□□□□ -0.62
SHMT2-217ENST00000555116 NDPQ00604 133 aa11.17□□□□□ -0.62
SHMT2-217ENST00000555116 CFHR3Q02985 330 aa11.17□□□□□ -0.62
SHMT2-217ENST00000555116 PLGLAQ15195 96 aa11.17□□□□□ -0.62
SHMT2-217ENST00000555116 TMEM128Q5BJH2 165 aa11.17□□□□□ -0.62
SHMT2-217ENST00000555116 LPCAT3Q6P1A2 487 aa11.17□□□□□ -0.62
SHMT2-217ENST00000555116 ZNF818PQ6ZRF7 136 aa11.17□□□□□ -0.62
SHMT2-217ENST00000555116 ZNF680Q8NEM1 530 aa11.17□□□□□ -0.62
SHMT2-217ENST00000555116 OR4X2Q8NGF9 303 aa11.17□□□□□ -0.62
SHMT2-217ENST00000555116 PHB2Q99623 299 aa11.17□□□□□ -0.62
SHMT2-217ENST00000555116 PRELID3BQ9Y3B1 194 aa11.17□□□□□ -0.62
SHMT2-217ENST00000555116 ATP6V0E1O15342 81 aa11.16□□□□□ -0.62
SHMT2-217ENST00000555116 TNFSF12O43508 249 aa11.16□□□□□ -0.62
SHMT2-217ENST00000555116 NSUN5P1Q3KNT7 163 aa11.16□□□□□ -0.62
SHMT2-217ENST00000555116 OR2B11Q5JQS5 317 aa11.16□□□□□ -0.62
SHMT2-217ENST00000555116 OSR1Q8TAX0 266 aaPredicted RBP11.16□□□□□ -0.62
SHMT2-217ENST00000555116 SUN5Q8TC36 379 aa11.16□□□□□ -0.62
SHMT2-217ENST00000555116 CASTOR1Q8WTX7 329 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms