RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 OR51S1Q8NGJ8 323 aa11.03□□□□□ -0.64
PTCH1-226ENST00000553011 OR13C8Q8NGS7 320 aa11.03□□□□□ -0.64
PTCH1-226ENST00000553011 TMEM167AQ8TBQ9 72 aa11.03□□□□□ -0.64
PTCH1-226ENST00000553011 CD300LFQ8TDQ1 290 aa11.03□□□□□ -0.64
PTCH1-226ENST00000553011 CASTOR1Q8WTX7 329 aa11.03□□□□□ -0.64
PTCH1-226ENST00000553011 SRRQ9GZT4 340 aa11.03□□□□□ -0.64
PTCH1-226ENST00000553011 PLEKHA2Q9HB19 425 aa11.03□□□□□ -0.64
PTCH1-226ENST00000553011 FOXA2Q9Y261 457 aaPredicted RBP11.03□□□□□ -0.64
PTCH1-226ENST00000553011 KBTBD11O94819 623 aa11.02□□□□□ -0.65
PTCH1-226ENST00000553011 APELAP0DMC3 54 aa11.02□□□□□ -0.65
PTCH1-226ENST00000553011 PF4V1P10720 104 aa11.02□□□□□ -0.65
PTCH1-226ENST00000553011 NQO2P16083 231 aa11.02□□□□□ -0.65
PTCH1-226ENST00000553011 PIGPP57054 158 aa11.02□□□□□ -0.65
PTCH1-226ENST00000553011 TAS2R31P59538 309 aa11.02□□□□□ -0.65
PTCH1-226ENST00000553011 RND3P61587 244 aa11.02□□□□□ -0.65
PTCH1-226ENST00000553011 KLF9Q13886 244 aaPredicted RBP11.02□□□□□ -0.65
PTCH1-226ENST00000553011 POU2AF1Q16633 256 aa11.02□□□□□ -0.65
PTCH1-226ENST00000553011 AKIRIN2Q53H80 203 aa11.02□□□□□ -0.65
PTCH1-226ENST00000553011 ASPHD1Q5U4P2 390 aa11.02□□□□□ -0.65
PTCH1-226ENST00000553011 OR4A47Q6IF82 309 aa11.02□□□□□ -0.65
PTCH1-226ENST00000553011 MMD2Q8IY49 270 aa11.02□□□□□ -0.65
PTCH1-226ENST00000553011 KLHL30-AS1Q8NEE0 82 aa11.02□□□□□ -0.65
PTCH1-226ENST00000553011 OR4F17Q8NGA8 305 aa11.02□□□□□ -0.65
PTCH1-226ENST00000553011 VSTM2AQ8TAG5 236 aa11.02□□□□□ -0.65
PTCH1-226ENST00000553011 SRSF12Q8WXF0 261 aaKnown RBP11.02□□□□□ -0.65
PTCH1-226ENST00000553011 ZNF486Q96H40 463 aaPredicted RBP11.02□□□□□ -0.65
PTCH1-226ENST00000553011 OR4F4Q96R69 305 aa11.02□□□□□ -0.65
PTCH1-226ENST00000553011 ZFP57Q9NU63 452 aa11.02□□□□□ -0.65
PTCH1-226ENST00000553011 CMYA5Q8N3K9 4069 aa11.02□□□□□ -0.65
PTCH1-226ENST00000553011 TRAV3A0A0B4J244 114 aa11.01□□□□□ -0.65
PTCH1-226ENST00000553011 MSGN1A6NI15 193 aa11.01□□□□□ -0.65
PTCH1-226ENST00000553011 NUDT19A8MXV4 375 aa11.01□□□□□ -0.65
PTCH1-226ENST00000553011 MPPED1O15442 326 aa11.01□□□□□ -0.65
PTCH1-226ENST00000553011 CREBL2O60519 120 aaPredicted RBP11.01□□□□□ -0.65
PTCH1-226ENST00000553011 ACTL6BO94805 426 aa11.01□□□□□ -0.65
PTCH1-226ENST00000553011 MYOD1P15172 320 aa11.01□□□□□ -0.65
PTCH1-226ENST00000553011 CNPY1Q3B7I2 92 aa11.01□□□□□ -0.65
PTCH1-226ENST00000553011 TOMM5Q8N4H5 51 aa11.01□□□□□ -0.65
PTCH1-226ENST00000553011 TCTEX1D1Q8N7M0 179 aa11.01□□□□□ -0.65
PTCH1-226ENST00000553011 OR5T1Q8NG75 326 aa11.01□□□□□ -0.65
PTCH1-226ENST00000553011 ZFAND1Q8TCF1 268 aa11.01□□□□□ -0.65
PTCH1-226ENST00000553011 MYOZ3Q8TDC0 251 aa11.01□□□□□ -0.65
PTCH1-226ENST00000553011 SDHCQ99643 169 aaPredicted RBP11.01□□□□□ -0.65
PTCH1-226ENST00000553011 PRRT1Q99946 306 aa11.01□□□□□ -0.65
PTCH1-226ENST00000553011 AIFM2Q9BRQ8 373 aa11.01□□□□□ -0.65
PTCH1-226ENST00000553011 HRASLSQ9HDD0 168 aa11.01□□□□□ -0.65
PTCH1-226ENST00000553011 TMEM140Q9NV12 185 aa11.01□□□□□ -0.65
PTCH1-226ENST00000553011 MCUBQ9NWR8 336 aa11.01□□□□□ -0.65
PTCH1-226ENST00000553011 BET1LQ9NYM9 111 aa11.01□□□□□ -0.65
PTCH1-226ENST00000553011 COMMD9Q9P000 198 aa11.01□□□□□ -0.65
PTCH1-226ENST00000553011 KRASP01116 189 aa11□□□□□ -0.65
PTCH1-226ENST00000553011 CTSDP07339 412 aaPredicted RBP11□□□□□ -0.65
PTCH1-226ENST00000553011 KIAA0141Q14154 515 aaPredicted RBP11□□□□□ -0.65
PTCH1-226ENST00000553011 TMEM65Q6PI78 240 aa11□□□□□ -0.65
PTCH1-226ENST00000553011 C8orf86Q6ZUL3 223 aa11□□□□□ -0.65
PTCH1-226ENST00000553011 ZNF695Q8IW36 515 aa11□□□□□ -0.65
PTCH1-226ENST00000553011 DMBX1Q8NFW5 382 aa11□□□□□ -0.65
PTCH1-226ENST00000553011 MS4A10Q96PG2 267 aa11□□□□□ -0.65
PTCH1-226ENST00000553011 PHB2Q99623 299 aa11□□□□□ -0.65
PTCH1-226ENST00000553011 SLC2A8Q9NY64 477 aa11□□□□□ -0.65
PTCH1-226ENST00000553011 COPZ2Q9P299 210 aa11□□□□□ -0.65
PTCH1-226ENST00000553011 A0A1B0GW64 132 aa10.99□□□□□ -0.65
PTCH1-226ENST00000553011 MARCH11A6NNE9 402 aa10.99□□□□□ -0.65
PTCH1-226ENST00000553011 E7EUB6 86 aa10.99□□□□□ -0.65
PTCH1-226ENST00000553011 UPK2O00526 184 aa10.99□□□□□ -0.65
PTCH1-226ENST00000553011 IGKV1-39P01597 117 aa10.99□□□□□ -0.65
PTCH1-226ENST00000553011 IGKV1D-39P04432 117 aa10.99□□□□□ -0.65
PTCH1-226ENST00000553011 IL6RP08887 468 aaPredicted RBP10.99□□□□□ -0.65
PTCH1-226ENST00000553011 G6PCP35575 357 aa10.99□□□□□ -0.65
PTCH1-226ENST00000553011 ECI1P42126 302 aa10.99□□□□□ -0.65
PTCH1-226ENST00000553011 RPL27AP46776 148 aaKnown RBP10.99□□□□□ -0.65
PTCH1-226ENST00000553011 CDX1P47902 265 aaPredicted RBP10.99□□□□□ -0.65
PTCH1-226ENST00000553011 RAB9AP51151 201 aa10.99□□□□□ -0.65
PTCH1-226ENST00000553011 AP3S2P59780 193 aa10.99□□□□□ -0.65
PTCH1-226ENST00000553011 ERVK-16P61578 105 aa10.99□□□□□ -0.65
PTCH1-226ENST00000553011 RPL8P62917 257 aaKnown RBP10.99□□□□□ -0.65
PTCH1-226ENST00000553011 SURF2Q15527 256 aaPredicted RBP10.99□□□□□ -0.65
PTCH1-226ENST00000553011 BAK1Q16611 211 aa10.99□□□□□ -0.65
PTCH1-226ENST00000553011 ETV3LQ6ZN32 361 aa10.99□□□□□ -0.65
PTCH1-226ENST00000553011 GDPD1Q8N9F7 314 aa10.99□□□□□ -0.65
PTCH1-226ENST00000553011 CCDC71LQ8N9Z2 235 aa10.99□□□□□ -0.65
PTCH1-226ENST00000553011 OR5M8Q8NGP6 311 aa10.99□□□□□ -0.65
PTCH1-226ENST00000553011 OR4A5Q8NH83 315 aa10.99□□□□□ -0.65
PTCH1-226ENST00000553011 DUX3Q96PT4 197 aa10.99□□□□□ -0.65
PTCH1-226ENST00000553011 TP53RKQ96S44 253 aa10.99□□□□□ -0.65
PTCH1-226ENST00000553011 RTBDNQ9BSG5 229 aaPredicted RBP10.99□□□□□ -0.65
PTCH1-226ENST00000553011 C5orf66Q9H5L9 145 aa10.99□□□□□ -0.65
PTCH1-226ENST00000553011 GNB4Q9HAV0 340 aa10.99□□□□□ -0.65
PTCH1-226ENST00000553011 FAM212BQ9NTI7 297 aaPredicted RBP10.99□□□□□ -0.65
PTCH1-226ENST00000553011 SCP2D1Q9UJQ7 156 aa10.99□□□□□ -0.65
PTCH1-226ENST00000553011 GPR132Q9UNW8 380 aa10.99□□□□□ -0.65
PTCH1-226ENST00000553011 C14orf166Q9Y224 244 aaKnown RBP10.99□□□□□ -0.65
PTCH1-226ENST00000553011 HMX3A6NHT5 357 aa10.98□□□□□ -0.65
PTCH1-226ENST00000553011 TEX22C9J3V5 150 aa10.98□□□□□ -0.65
PTCH1-226ENST00000553011 H0Y980 276 aa10.98□□□□□ -0.65
PTCH1-226ENST00000553011 PF4P02776 101 aa10.98□□□□□ -0.65
PTCH1-226ENST00000553011 HLA-GP17693 338 aa10.98□□□□□ -0.65
PTCH1-226ENST00000553011 MAS1LP35410 378 aa10.98□□□□□ -0.65
PTCH1-226ENST00000553011 FAUP35544 74 aaKnown RBP10.98□□□□□ -0.65
PTCH1-226ENST00000553011 DEFB136Q30KP8 78 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms