RNA–Protein interactions for RNA: ENST00000538333.3

LIMK1-208, Transcript of LIM domain kinase 1, humanhuman

TSL 2 BASIC

Gene LIMK1, Length 2,170 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-208ENST00000538333 NKX6-3A6NJ46 265 aa11.5□□□□□ -0.57
LIMK1-208ENST00000538333 RRHO14718 337 aa11.5□□□□□ -0.57
LIMK1-208ENST00000538333 OR2C1O95371 312 aa11.5□□□□□ -0.57
LIMK1-208ENST00000538333 CD1BP29016 333 aa11.5□□□□□ -0.57
LIMK1-208ENST00000538333 TAGLN2P37802 199 aaKnown RBP11.5□□□□□ -0.57
LIMK1-208ENST00000538333 GNG10P50151 68 aa11.5□□□□□ -0.57
LIMK1-208ENST00000538333 TMPRSS3P57727 454 aa11.5□□□□□ -0.57
LIMK1-208ENST00000538333 RAB5BP61020 215 aa11.5□□□□□ -0.57
LIMK1-208ENST00000538333 RPP30P78346 268 aaKnown RBP11.5□□□□□ -0.57
LIMK1-208ENST00000538333 OR4A47Q6IF82 309 aa11.5□□□□□ -0.57
LIMK1-208ENST00000538333 MALSU1Q96EH3 234 aa11.5□□□□□ -0.57
LIMK1-208ENST00000538333 SAP30LQ9HAJ7 183 aa11.5□□□□□ -0.57
LIMK1-208ENST00000538333 TMEM14BQ9NUH8 114 aa11.5□□□□□ -0.57
LIMK1-208ENST00000538333 SLC25A10Q9UBX3 287 aaPredicted RBP11.5□□□□□ -0.57
LIMK1-208ENST00000538333 FOXA2Q9Y261 457 aaPredicted RBP11.5□□□□□ -0.57
LIMK1-208ENST00000538333 ZNF727A8MUV8 499 aa11.49□□□□□ -0.57
LIMK1-208ENST00000538333 C1orf196B1AJZ1 125 aa11.49□□□□□ -0.57
LIMK1-208ENST00000538333 SHISA9B4DS77 424 aa11.49□□□□□ -0.57
LIMK1-208ENST00000538333 TMEM178BH3BS89 294 aa11.49□□□□□ -0.57
LIMK1-208ENST00000538333 IFNA1P01562 189 aa11.49□□□□□ -0.57
LIMK1-208ENST00000538333 IFNA10P01566 189 aa11.49□□□□□ -0.57
LIMK1-208ENST00000538333 FAM87AP0C7U9 286 aa11.49□□□□□ -0.57
LIMK1-208ENST00000538333 NDUFB7P17568 137 aa11.49□□□□□ -0.57
LIMK1-208ENST00000538333 DMRTC2Q8IXT2 367 aaPredicted RBP11.49□□□□□ -0.57
LIMK1-208ENST00000538333 ZNF709Q8N972 641 aa11.49□□□□□ -0.57
LIMK1-208ENST00000538333 RND1Q92730 232 aa11.49□□□□□ -0.57
LIMK1-208ENST00000538333 GGACTQ9BVM4 153 aa11.49□□□□□ -0.57
LIMK1-208ENST00000538333 HEYLQ9NQ87 328 aaPredicted RBP11.49□□□□□ -0.57
LIMK1-208ENST00000538333 C17orf112F2Z3M2 114 aa11.48□□□□□ -0.57
LIMK1-208ENST00000538333 TNFRSF13BO14836 293 aaPredicted RBP11.48□□□□□ -0.57
LIMK1-208ENST00000538333 HMGB3O15347 200 aaKnown RBP11.48□□□□□ -0.57
LIMK1-208ENST00000538333 IL6RP08887 468 aaPredicted RBP11.48□□□□□ -0.57
LIMK1-208ENST00000538333 CD81P60033 236 aa11.48□□□□□ -0.57
LIMK1-208ENST00000538333 MEF2CQ06413 473 aaPredicted RBP11.48□□□□□ -0.57
LIMK1-208ENST00000538333 RAB24Q969Q5 203 aa11.48□□□□□ -0.57
LIMK1-208ENST00000538333 TMPRSS5Q9H3S3 457 aa11.48□□□□□ -0.57
LIMK1-208ENST00000538333 ZNRD1Q9P1U0 126 aa11.48□□□□□ -0.57
LIMK1-208ENST00000538333 NCOR2Q9Y618 2525 aa11.48□□□□□ -0.57
LIMK1-208ENST00000538333 ARFGEF3Q5TH69 2177 aa11.48□□□□□ -0.57
LIMK1-208ENST00000538333 CT45A6P0DMU7 189 aa11.48□□□□□ -0.57
LIMK1-208ENST00000538333 CT45A5P0DMU8 189 aa11.48□□□□□ -0.57
LIMK1-208ENST00000538333 CT45A7P0DMV0 189 aa11.48□□□□□ -0.57
LIMK1-208ENST00000538333 ERVFRD-1P60508 538 aa11.48□□□□□ -0.57
LIMK1-208ENST00000538333 RBPJQ06330 500 aa11.48□□□□□ -0.57
LIMK1-208ENST00000538333 HEPN1Q6WQI6 88 aa11.48□□□□□ -0.57
LIMK1-208ENST00000538333 RBMS3Q6XE24 437 aaKnown RBP11.48□□□□□ -0.57
LIMK1-208ENST00000538333 ABHD12Q8N2K0 398 aa11.48□□□□□ -0.57
LIMK1-208ENST00000538333 OR10A7Q8NGE5 316 aa11.48□□□□□ -0.57
LIMK1-208ENST00000538333 RNASE6Q93091 150 aaKnown RBP11.48□□□□□ -0.57
LIMK1-208ENST00000538333 VKORC1Q9BQB6 163 aa11.48□□□□□ -0.57
LIMK1-208ENST00000538333 ACTR3CQ9C0K3 210 aaPredicted RBP11.48□□□□□ -0.57
LIMK1-208ENST00000538333 POLEQ07864 2286 aa11.47□□□□□ -0.57
LIMK1-208ENST00000538333 PPIAL4EA0A075B759 164 aa11.47□□□□□ -0.57
LIMK1-208ENST00000538333 PPIAL4DF5H284 164 aa11.47□□□□□ -0.57
LIMK1-208ENST00000538333 PPIAL4FP0DN26 164 aa11.47□□□□□ -0.57
LIMK1-208ENST00000538333 DEFA4P12838 97 aa11.47□□□□□ -0.57
LIMK1-208ENST00000538333 HOXA1P49639 335 aaPredicted RBP11.47□□□□□ -0.57
LIMK1-208ENST00000538333 RPL31P62899 125 aaKnown RBP11.47□□□□□ -0.57
LIMK1-208ENST00000538333 MEF2BQ02080 365 aaPredicted RBP11.47□□□□□ -0.57
LIMK1-208ENST00000538333 NCMAPQ5T1S8 102 aa11.47□□□□□ -0.57
LIMK1-208ENST00000538333 TREML4Q6UXN2 200 aa11.47□□□□□ -0.57
LIMK1-208ENST00000538333 LINC00518Q8N0U6 118 aa11.47□□□□□ -0.57
LIMK1-208ENST00000538333 C1orf87Q8N0U7 546 aa11.47□□□□□ -0.57
LIMK1-208ENST00000538333 MSRB2Q9Y3D2 182 aa11.47□□□□□ -0.57
LIMK1-208ENST00000538333 PPIAL4AQ9Y536 164 aa11.47□□□□□ -0.57
LIMK1-208ENST00000538333 PKDREJQ9NTG1 2253 aa11.47□□□□□ -0.57
LIMK1-208ENST00000538333 B4DEV8 164 aa11.47□□□□□ -0.57
LIMK1-208ENST00000538333 SEC14L6B5MCN3 397 aa11.47□□□□□ -0.57
LIMK1-208ENST00000538333 E7EQL1 145 aa11.47□□□□□ -0.57
LIMK1-208ENST00000538333 MPDU1O75352 247 aa11.47□□□□□ -0.57
LIMK1-208ENST00000538333 HSPE1P61604 102 aaKnown RBP11.47□□□□□ -0.57
LIMK1-208ENST00000538333 PNRC1Q12796 327 aaPredicted RBP11.47□□□□□ -0.57
LIMK1-208ENST00000538333 WDR25Q64LD2 544 aaPredicted RBP11.47□□□□□ -0.57
LIMK1-208ENST00000538333 GAL3ST2Q9H3Q3 398 aa11.47□□□□□ -0.57
LIMK1-208ENST00000538333 SDF2L1Q9HCN8 221 aa11.47□□□□□ -0.57
LIMK1-208ENST00000538333 SIRT7Q9NRC8 400 aa11.47□□□□□ -0.57
LIMK1-208ENST00000538333 TMEM106BQ9NUM4 274 aa11.47□□□□□ -0.57
LIMK1-208ENST00000538333 CXorf65A6NEN9 183 aa11.46□□□□□ -0.57
LIMK1-208ENST00000538333 HRASP01112 189 aa11.46□□□□□ -0.57
LIMK1-208ENST00000538333 IGKV1-16P04430 117 aa11.46□□□□□ -0.57
LIMK1-208ENST00000538333 CCL3L1P16619 93 aa11.46□□□□□ -0.57
LIMK1-208ENST00000538333 ACOT6Q3I5F7 207 aaPredicted RBP11.46□□□□□ -0.57
LIMK1-208ENST00000538333 ZNF833PQ6ZTB9 187 aa11.46□□□□□ -0.57
LIMK1-208ENST00000538333 CCL17Q92583 94 aa11.46□□□□□ -0.57
LIMK1-208ENST00000538333 NEUROG1Q92886 237 aa11.46□□□□□ -0.57
LIMK1-208ENST00000538333 C1orf159Q96HA4 380 aa11.46□□□□□ -0.57
LIMK1-208ENST00000538333 MS4A5Q9H3V2 200 aa11.46□□□□□ -0.57
LIMK1-208ENST00000538333 NGBQ9NPG2 151 aa11.46□□□□□ -0.57
LIMK1-208ENST00000538333 TNCP24821 2201 aa11.46□□□□□ -0.58
LIMK1-208ENST00000538333 SRRM4A7MD48 611 aaKnown RBP11.45□□□□□ -0.58
LIMK1-208ENST00000538333 CYB5BO43169 146 aa11.45□□□□□ -0.58
LIMK1-208ENST00000538333 NDUFS6O75380 124 aaKnown RBP11.45□□□□□ -0.58
LIMK1-208ENST00000538333 ELOBQ15370 118 aa11.45□□□□□ -0.58
LIMK1-208ENST00000538333 GCSAMLQ5JQS6 135 aa11.45□□□□□ -0.58
LIMK1-208ENST00000538333 TMEM200BQ69YZ2 307 aa11.45□□□□□ -0.58
LIMK1-208ENST00000538333 OR13D1Q8NGV5 346 aa11.45□□□□□ -0.58
LIMK1-208ENST00000538333 ZNF714Q96N38 554 aa11.45□□□□□ -0.58
LIMK1-208ENST00000538333 MGST2Q99735 147 aa11.45□□□□□ -0.58
LIMK1-208ENST00000538333 MANBALQ9NQG1 85 aa11.45□□□□□ -0.58
LIMK1-208ENST00000538333 LSM4Q9Y4Z0 139 aaKnown RBP11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms