RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 OR51H1Q8NH63 302 aa10.07□□□□□ -0.8
VPS28-216ENST00000533806 VSTM2AQ8TAG5 236 aa10.07□□□□□ -0.8
VPS28-216ENST00000533806 CD300LFQ8TDQ1 290 aa10.07□□□□□ -0.8
VPS28-216ENST00000533806 ABHD5Q8WTS1 349 aa10.07□□□□□ -0.8
VPS28-216ENST00000533806 CASTOR1Q8WTX7 329 aa10.07□□□□□ -0.8
VPS28-216ENST00000533806 MRGPRFQ96AM1 343 aa10.07□□□□□ -0.8
VPS28-216ENST00000533806 OR2A7Q96R45 310 aa10.07□□□□□ -0.8
VPS28-216ENST00000533806 VSIG4Q9Y279 399 aa10.07□□□□□ -0.8
VPS28-216ENST00000533806 TNCP24821 2201 aa10.07□□□□□ -0.8
VPS28-216ENST00000533806 TEX22C9J3V5 150 aa10.06□□□□□ -0.8
VPS28-216ENST00000533806 E7EUB6 86 aa10.06□□□□□ -0.8
VPS28-216ENST00000533806 H3BUA1 57 aa10.06□□□□□ -0.8
VPS28-216ENST00000533806 RLN1P04808 185 aa10.06□□□□□ -0.8
VPS28-216ENST00000533806 FGF2P09038 288 aa10.06□□□□□ -0.8
VPS28-216ENST00000533806 F2RP25116 425 aa10.06□□□□□ -0.8
VPS28-216ENST00000533806 TAS2R19P59542 299 aa10.06□□□□□ -0.8
VPS28-216ENST00000533806 IL18Q14116 193 aa10.06□□□□□ -0.8
VPS28-216ENST00000533806 TNXAQ16473 311 aa10.06□□□□□ -0.8
VPS28-216ENST00000533806 DEFB136Q30KP8 78 aa10.06□□□□□ -0.8
VPS28-216ENST00000533806 OR4A47Q6IF82 309 aa10.06□□□□□ -0.8
VPS28-216ENST00000533806 STEAP1BQ6NZ63 245 aa10.06□□□□□ -0.8
VPS28-216ENST00000533806 C1QL4Q86Z23 238 aa10.06□□□□□ -0.8
VPS28-216ENST00000533806 CMTM1Q8IZ96 169 aa10.06□□□□□ -0.8
VPS28-216ENST00000533806 OR5T1Q8NG75 326 aa10.06□□□□□ -0.8
VPS28-216ENST00000533806 TERB2Q8NHR7 220 aa10.06□□□□□ -0.8
VPS28-216ENST00000533806 SRSF12Q8WXF0 261 aaKnown RBP10.06□□□□□ -0.8
VPS28-216ENST00000533806 DGCR14Q96DF8 476 aaKnown RBP10.06□□□□□ -0.8
VPS28-216ENST00000533806 DUX3Q96PT4 197 aa10.06□□□□□ -0.8
VPS28-216ENST00000533806 AIFM2Q9BRQ8 373 aa10.06□□□□□ -0.8
VPS28-216ENST00000533806 SLA2Q9H6Q3 261 aa10.06□□□□□ -0.8
VPS28-216ENST00000533806 FAM212BQ9NTI7 297 aaPredicted RBP10.06□□□□□ -0.8
VPS28-216ENST00000533806 BET1LQ9NYM9 111 aa10.06□□□□□ -0.8
VPS28-216ENST00000533806 FABP12A6NFH5 140 aa10.05□□□□□ -0.8
VPS28-216ENST00000533806 CCDC160A6NGH7 325 aa10.05□□□□□ -0.8
VPS28-216ENST00000533806 CGB1A6NKQ9 187 aa10.05□□□□□ -0.8
VPS28-216ENST00000533806 CREBL2O60519 120 aaPredicted RBP10.05□□□□□ -0.8
VPS28-216ENST00000533806 S1PR2O95136 353 aa10.05□□□□□ -0.8
VPS28-216ENST00000533806 IGLL1P15814 213 aa10.05□□□□□ -0.8
VPS28-216ENST00000533806 NQO2P16083 231 aa10.05□□□□□ -0.8
VPS28-216ENST00000533806 CD33P20138 364 aa10.05□□□□□ -0.8
VPS28-216ENST00000533806 MAS1LP35410 378 aa10.05□□□□□ -0.8
VPS28-216ENST00000533806 RND3P61587 244 aa10.05□□□□□ -0.8
VPS28-216ENST00000533806 DEFA6Q01524 100 aa10.05□□□□□ -0.8
VPS28-216ENST00000533806 C10orf55Q5SWW7 151 aa10.05□□□□□ -0.8
VPS28-216ENST00000533806 SLC38A6Q8IZM9 456 aa10.05□□□□□ -0.8
VPS28-216ENST00000533806 POC5Q8NA72 575 aa10.05□□□□□ -0.8
VPS28-216ENST00000533806 ADAD2Q8NCV1 583 aaKnown RBP10.05□□□□□ -0.8
VPS28-216ENST00000533806 OR4A5Q8NH83 315 aa10.05□□□□□ -0.8
VPS28-216ENST00000533806 RCC1LQ96I51 464 aaKnown RBP10.05□□□□□ -0.8
VPS28-216ENST00000533806 COMMD9Q9P000 198 aa10.05□□□□□ -0.8
VPS28-216ENST00000533806 V9GYH0 126 aa10.05□□□□□ -0.8
VPS28-216ENST00000533806 TRAV3A0A0B4J244 114 aa10.04□□□□□ -0.8
VPS28-216ENST00000533806 ANKRD20A5PA0PJZ0 165 aa10.04□□□□□ -0.8
VPS28-216ENST00000533806 RBMXL2O75526 392 aaKnown RBP10.04□□□□□ -0.8
VPS28-216ENST00000533806 RAB3DO95716 219 aa10.04□□□□□ -0.8
VPS28-216ENST00000533806 IFNA6P05013 189 aa10.04□□□□□ -0.8
VPS28-216ENST00000533806 PTBP1P26599 531 aaKnown RBP eCLIP10.04□□□□□ -0.8
VPS28-216ENST00000533806 RPL8P62917 257 aaKnown RBP10.04□□□□□ -0.8
VPS28-216ENST00000533806 KLK9Q2XQG4 91 aa10.04□□□□□ -0.8
VPS28-216ENST00000533806 PHLDA2Q53GA4 152 aa10.04□□□□□ -0.8
VPS28-216ENST00000533806 FOXB2Q5VYV0 432 aa10.04□□□□□ -0.8
VPS28-216ENST00000533806 SSX9Q7RTT3 188 aa10.04□□□□□ -0.8
VPS28-216ENST00000533806 TBC1D26Q86UD7 250 aa10.04□□□□□ -0.8
VPS28-216ENST00000533806 CCDC190Q86UF4 302 aa10.04□□□□□ -0.8
VPS28-216ENST00000533806 TTC9CQ8N5M4 171 aa10.04□□□□□ -0.8
VPS28-216ENST00000533806 OR11H1Q8NG94 326 aa10.04□□□□□ -0.8
VPS28-216ENST00000533806 ZNF486Q96H40 463 aaPredicted RBP10.04□□□□□ -0.8
VPS28-216ENST00000533806 MS4A10Q96PG2 267 aa10.04□□□□□ -0.8
VPS28-216ENST00000533806 SPIN2AQ99865 258 aa10.04□□□□□ -0.8
VPS28-216ENST00000533806 SPIN2BQ9BPZ2 258 aa10.04□□□□□ -0.8
VPS28-216ENST00000533806 SLC2A9Q9NRM0 540 aa10.04□□□□□ -0.8
VPS28-216ENST00000533806 KLK9Q9UKQ9 250 aa10.04□□□□□ -0.8
VPS28-216ENST00000533806 TRBV9A0A0B4J1U6 114 aa10.03□□□□□ -0.8
VPS28-216ENST00000533806 MARCH11A6NNE9 402 aa10.03□□□□□ -0.8
VPS28-216ENST00000533806 UPK2O00526 184 aa10.03□□□□□ -0.8
VPS28-216ENST00000533806 MPPED1O15442 326 aa10.03□□□□□ -0.8
VPS28-216ENST00000533806 WIPF1O43516 503 aa10.03□□□□□ -0.8
VPS28-216ENST00000533806 DUS4LO95620 317 aaKnown RBP10.03□□□□□ -0.8
VPS28-216ENST00000533806 IGKV1-39P01597 117 aa10.03□□□□□ -0.8
VPS28-216ENST00000533806 IGKV1D-39P04432 117 aa10.03□□□□□ -0.8
VPS28-216ENST00000533806 LGALS1P09382 135 aaKnown RBP10.03□□□□□ -0.8
VPS28-216ENST00000533806 OR9G9P0C7N8 305 aa10.03□□□□□ -0.8
VPS28-216ENST00000533806 HLA-GP17693 338 aa10.03□□□□□ -0.8
VPS28-216ENST00000533806 ETV6P41212 452 aa10.03□□□□□ -0.8
VPS28-216ENST00000533806 LPAR6P43657 344 aa10.03□□□□□ -0.8
VPS28-216ENST00000533806 MEF2DQ14814 521 aa10.03□□□□□ -0.8
VPS28-216ENST00000533806 ZNF79Q15937 498 aa10.03□□□□□ -0.8
VPS28-216ENST00000533806 OR1N2Q8NGR9 330 aa10.03□□□□□ -0.8
VPS28-216ENST00000533806 ALX4Q9H161 411 aaPredicted RBP10.03□□□□□ -0.8
VPS28-216ENST00000533806 DPPA5A6NC42 116 aa10.02□□□□□ -0.81
VPS28-216ENST00000533806 ACTL6BO94805 426 aa10.02□□□□□ -0.81
VPS28-216ENST00000533806 TRGV3P03979 118 aa10.02□□□□□ -0.81
VPS28-216ENST00000533806 CRYGCP07315 174 aa10.02□□□□□ -0.81
VPS28-216ENST00000533806 AKAIN1P0CW23 69 aa10.02□□□□□ -0.81
VPS28-216ENST00000533806 APELAP0DMC3 54 aa10.02□□□□□ -0.81
VPS28-216ENST00000533806 MYOD1P15172 320 aa10.02□□□□□ -0.81
VPS28-216ENST00000533806 PI3P19957 117 aa10.02□□□□□ -0.81
VPS28-216ENST00000533806 CD40LGP29965 261 aa10.02□□□□□ -0.81
VPS28-216ENST00000533806 RPL27AP46776 148 aaKnown RBP10.02□□□□□ -0.81
VPS28-216ENST00000533806 TPPP2P59282 170 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms