RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-222ENST00000526025 NDPQ00604 133 aa16.34■□□□□ 0.21
CD44-222ENST00000526025 SHISA2Q6UWI4 295 aa16.34■□□□□ 0.21
CD44-222ENST00000526025 VKORC1L1Q8N0U8 176 aa16.34■□□□□ 0.21
CD44-222ENST00000526025 COMMD1Q8N668 190 aa16.34■□□□□ 0.21
CD44-222ENST00000526025 DMBX1Q8NFW5 382 aa16.34■□□□□ 0.21
CD44-222ENST00000526025 SGMS2Q8NHU3 365 aa16.34■□□□□ 0.21
CD44-222ENST00000526025 ARPC1AQ92747 370 aa16.34■□□□□ 0.21
CD44-222ENST00000526025 CITED1Q99966 193 aa16.34■□□□□ 0.21
CD44-222ENST00000526025 TMEM222Q9H0R3 208 aa16.34■□□□□ 0.21
CD44-222ENST00000526025 ZNF430Q9H8G1 570 aaPredicted RBP16.34■□□□□ 0.21
CD44-222ENST00000526025 TMEM140Q9NV12 185 aa16.34■□□□□ 0.21
CD44-222ENST00000526025 KCNIP3Q9Y2W7 256 aa16.34■□□□□ 0.21
CD44-222ENST00000526025 PSMB11A5LHX3 300 aa16.33■□□□□ 0.2
CD44-222ENST00000526025 SLC35B1P78383 322 aa16.33■□□□□ 0.2
CD44-222ENST00000526025 CFHR3Q02985 330 aa16.33■□□□□ 0.2
CD44-222ENST00000526025 PJVKQ0ZLH3 352 aa16.33■□□□□ 0.2
CD44-222ENST00000526025 FXYD3Q14802 87 aa16.33■□□□□ 0.2
CD44-222ENST00000526025 TMEM128Q5BJH2 165 aa16.33■□□□□ 0.2
CD44-222ENST00000526025 C19orf54Q5BKX5 351 aa16.33■□□□□ 0.2
CD44-222ENST00000526025 CENPVQ7Z7K6 275 aaPredicted RBP16.33■□□□□ 0.2
CD44-222ENST00000526025 ADAD2Q8NCV1 583 aaKnown RBP16.33■□□□□ 0.2
CD44-222ENST00000526025 TMEM68Q96MH6 324 aa16.33■□□□□ 0.2
CD44-222ENST00000526025 NOL4LQ96MY1 436 aaPredicted RBP16.33■□□□□ 0.2
CD44-222ENST00000526025 CLCC1Q96S66 551 aa16.33■□□□□ 0.2
CD44-222ENST00000526025 PARP11Q9NR21 331 aa16.33■□□□□ 0.2
CD44-222ENST00000526025 TBC1D24Q9ULP9 559 aa16.33■□□□□ 0.2
CD44-222ENST00000526025 PIGBOS1A0A0B4J2F0 54 aa16.32■□□□□ 0.2
CD44-222ENST00000526025 UPK2O00526 184 aa16.32■□□□□ 0.2
CD44-222ENST00000526025 ARPC1BO15143 372 aaKnown RBP16.32■□□□□ 0.2
CD44-222ENST00000526025 ACTL6BO94805 426 aa16.32■□□□□ 0.2
CD44-222ENST00000526025 CNIH1O95406 144 aa16.32■□□□□ 0.2
CD44-222ENST00000526025 CDS2O95674 445 aa16.32■□□□□ 0.2
CD44-222ENST00000526025 IGKV1-39P01597 117 aa16.32■□□□□ 0.2
CD44-222ENST00000526025 IGKV1D-39P04432 117 aa16.32■□□□□ 0.2
CD44-222ENST00000526025 OR5AC1P0C628 307 aa16.32■□□□□ 0.2
CD44-222ENST00000526025 EGR2P11161 476 aaPredicted RBP16.32■□□□□ 0.2
CD44-222ENST00000526025 VDAC1P21796 283 aa16.32■□□□□ 0.2
CD44-222ENST00000526025 SLC6A1P30531 599 aa16.32■□□□□ 0.2
CD44-222ENST00000526025 RPL8P62917 257 aaKnown RBP16.32■□□□□ 0.2
CD44-222ENST00000526025 TMEM267Q0VDI3 215 aaPredicted RBP16.32■□□□□ 0.2
CD44-222ENST00000526025 AKIRIN2Q53H80 203 aa16.32■□□□□ 0.2
CD44-222ENST00000526025 MZT2BQ6NZ67 158 aa16.32■□□□□ 0.2
CD44-222ENST00000526025 SSX9Q7RTT3 188 aa16.32■□□□□ 0.2
CD44-222ENST00000526025 CENPSQ8N2Z9 138 aa16.32■□□□□ 0.2
CD44-222ENST00000526025 GLYATL2Q8WU03 294 aa16.32■□□□□ 0.2
CD44-222ENST00000526025 SEC22AQ96IW7 307 aa16.32■□□□□ 0.2
CD44-222ENST00000526025 TSC22D3Q99576 134 aa16.32■□□□□ 0.2
CD44-222ENST00000526025 NUBP2Q9Y5Y2 271 aa16.32■□□□□ 0.2
CD44-222ENST00000526025 TRAV41A0A0B4J266 112 aa16.31■□□□□ 0.2
CD44-222ENST00000526025 KRASP01116 189 aa16.31■□□□□ 0.2
CD44-222ENST00000526025 ANXA3P12429 323 aa16.31■□□□□ 0.2
CD44-222ENST00000526025 AKR1C4P17516 323 aa16.31■□□□□ 0.2
CD44-222ENST00000526025 KRTAP10-3P60369 221 aa16.31■□□□□ 0.2
CD44-222ENST00000526025 SUPT4H1P63272 117 aaKnown RBP16.31■□□□□ 0.2
CD44-222ENST00000526025 TMED4Q7Z7H5 227 aa16.31■□□□□ 0.2
CD44-222ENST00000526025 SLC25A42Q86VD7 318 aa16.31■□□□□ 0.2
CD44-222ENST00000526025 OR5AU1Q8NGC0 362 aa16.31■□□□□ 0.2
CD44-222ENST00000526025 IL22RA2Q969J5 263 aa16.31■□□□□ 0.2
CD44-222ENST00000526025 TMEM56Q96MV1 263 aa16.31■□□□□ 0.2
CD44-222ENST00000526025 FBXO7Q9Y3I1 522 aa16.31■□□□□ 0.2
CD44-222ENST00000526025 TMEM56-RWDD3S4R434 201 aa16.31■□□□□ 0.2
CD44-222ENST00000526025 FBXO24O75426 580 aa16.3■□□□□ 0.2
CD44-222ENST00000526025 IGHG4P01861 327 aa16.3■□□□□ 0.2
CD44-222ENST00000526025 HLA-GP17693 338 aa16.3■□□□□ 0.2
CD44-222ENST00000526025 PPIFP30405 207 aaKnown RBP16.3■□□□□ 0.2
CD44-222ENST00000526025 G6PCP35575 357 aa16.3■□□□□ 0.2
CD44-222ENST00000526025 SRPXP78539 464 aa16.3■□□□□ 0.2
CD44-222ENST00000526025 IFITM3Q01628 133 aa16.3■□□□□ 0.2
CD44-222ENST00000526025 TNXAQ16473 311 aa16.3■□□□□ 0.2
CD44-222ENST00000526025 TRIM16LQ309B1 348 aa16.3■□□□□ 0.2
CD44-222ENST00000526025 SP6Q3SY56 376 aa16.3■□□□□ 0.2
CD44-222ENST00000526025 MINDY2Q8NBR6 621 aa16.3■□□□□ 0.2
CD44-222ENST00000526025 OR4X2Q8NGF9 303 aa16.3■□□□□ 0.2
CD44-222ENST00000526025 SRSF12Q8WXF0 261 aaKnown RBP16.3■□□□□ 0.2
CD44-222ENST00000526025 TET2Q6N021 2002 aaPredicted RBP16.29■□□□□ 0.2
CD44-222ENST00000526025 P0C879 139 aa16.29■□□□□ 0.2
CD44-222ENST00000526025 GNB1P62873 340 aa16.29■□□□□ 0.2
CD44-222ENST00000526025 TMEM187Q14656 261 aa16.29■□□□□ 0.2
CD44-222ENST00000526025 TEX38Q6PEX7 206 aa16.29■□□□□ 0.2
CD44-222ENST00000526025 RNF152Q8N8N0 203 aa16.29■□□□□ 0.2
CD44-222ENST00000526025 GRPEL2Q8TAA5 225 aa16.29■□□□□ 0.2
CD44-222ENST00000526025 ABHD5Q8WTS1 349 aa16.29■□□□□ 0.2
CD44-222ENST00000526025 RBPMSQ93062 196 aaKnown RBP16.29■□□□□ 0.2
CD44-222ENST00000526025 SPIN2AQ99865 258 aa16.29■□□□□ 0.2
CD44-222ENST00000526025 SPIN2BQ9BPZ2 258 aa16.29■□□□□ 0.2
CD44-222ENST00000526025 LINC00527Q9UJ94 153 aa16.29■□□□□ 0.2
CD44-222ENST00000526025 ELANEP08246 267 aa16.28■□□□□ 0.2
CD44-222ENST00000526025 DEFA1P59665 94 aa16.28■□□□□ 0.2
CD44-222ENST00000526025 DEFA3P59666 94 aa16.28■□□□□ 0.2
CD44-222ENST00000526025 FOXE3Q13461 319 aa16.28■□□□□ 0.2
CD44-222ENST00000526025 THOC7Q6I9Y2 204 aaKnown RBP16.28■□□□□ 0.2
CD44-222ENST00000526025 H2BFWTQ7Z2G1 175 aa16.28■□□□□ 0.2
CD44-222ENST00000526025 FAM219AQ8IW50 185 aa16.28■□□□□ 0.2
CD44-222ENST00000526025 SRSF8Q9BRL6 282 aaKnown RBP16.28■□□□□ 0.2
CD44-222ENST00000526025 ALX4Q9H161 411 aaPredicted RBP16.28■□□□□ 0.2
CD44-222ENST00000526025 FKBP11Q9NYL4 201 aa16.28■□□□□ 0.2
CD44-222ENST00000526025 PRNDQ9UKY0 176 aa16.28■□□□□ 0.2
CD44-222ENST00000526025 G3V318 75 aa16.27■□□□□ 0.2
CD44-222ENST00000526025 SNAPC5O75971 98 aa16.27■□□□□ 0.2
CD44-222ENST00000526025 IGKV1-5P01602 117 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms