RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 PUSL1Q8N0Z8 303 aaKnown RBP9.73□□□□□ -0.85
SDC1-206ENST00000482879 C12orf45Q8N5I9 185 aaPredicted RBP9.73□□□□□ -0.85
SDC1-206ENST00000482879 FAM71E2Q8N5Q1 922 aa9.73□□□□□ -0.85
SDC1-206ENST00000482879 SLC35G3Q8N808 338 aa9.73□□□□□ -0.85
SDC1-206ENST00000482879 LRTM2Q8N967 370 aa9.73□□□□□ -0.85
SDC1-206ENST00000482879 UXS1Q8NBZ7 420 aa9.73□□□□□ -0.85
SDC1-206ENST00000482879 MITD1Q8WV92 249 aa9.73□□□□□ -0.85
SDC1-206ENST00000482879 RRNAD1Q96FB5 475 aaKnown RBP9.73□□□□□ -0.85
SDC1-206ENST00000482879 PHB2Q99623 299 aa9.73□□□□□ -0.85
SDC1-206ENST00000482879 TPSG1Q9NRR2 321 aa9.73□□□□□ -0.85
SDC1-206ENST00000482879 SHPKQ9UHJ6 478 aa9.73□□□□□ -0.85
SDC1-206ENST00000482879 C2CD3Q4AC94 2353 aa9.73□□□□□ -0.85
SDC1-206ENST00000482879 SH2D7A6NKC9 451 aaPredicted RBP9.72□□□□□ -0.85
SDC1-206ENST00000482879 SNRPGP15A8MWD9 76 aa9.72□□□□□ -0.85
SDC1-206ENST00000482879 UPK2O00526 184 aa9.72□□□□□ -0.85
SDC1-206ENST00000482879 FCN1O00602 326 aa9.72□□□□□ -0.85
SDC1-206ENST00000482879 CREBL2O60519 120 aaPredicted RBP9.72□□□□□ -0.85
SDC1-206ENST00000482879 SNAPC5O75971 98 aa9.72□□□□□ -0.85
SDC1-206ENST00000482879 KBTBD11O94819 623 aa9.72□□□□□ -0.85
SDC1-206ENST00000482879 CRYBA1P05813 215 aa9.72□□□□□ -0.85
SDC1-206ENST00000482879 HOXB5P09067 269 aa9.72□□□□□ -0.85
SDC1-206ENST00000482879 BLCAPP62952 87 aa9.72□□□□□ -0.85
SDC1-206ENST00000482879 SRSF2Q01130 221 aaKnown RBP9.72□□□□□ -0.85
SDC1-206ENST00000482879 C9orf152Q5JTZ5 239 aa9.72□□□□□ -0.85
SDC1-206ENST00000482879 PPP1R27Q86WC6 154 aa9.72□□□□□ -0.85
SDC1-206ENST00000482879 LURAP1LQ8IV03 231 aa9.72□□□□□ -0.85
SDC1-206ENST00000482879 OR4A5Q8NH83 315 aa9.72□□□□□ -0.85
SDC1-206ENST00000482879 TMEM167AQ8TBQ9 72 aa9.72□□□□□ -0.85
SDC1-206ENST00000482879 NPFFR1Q9GZQ6 430 aa9.72□□□□□ -0.85
SDC1-206ENST00000482879 RANBP3Q9H6Z4 567 aaPredicted RBP9.72□□□□□ -0.85
SDC1-206ENST00000482879 BET1LQ9NYM9 111 aa9.72□□□□□ -0.85
SDC1-206ENST00000482879 MMP24Q9Y5R2 645 aa9.72□□□□□ -0.85
SDC1-206ENST00000482879 TRAV3A0A0B4J244 114 aa9.71□□□□□ -0.86
SDC1-206ENST00000482879 A0A0G2JRQ6 117 aa9.71□□□□□ -0.86
SDC1-206ENST00000482879 DUXBA0A1W2PPF3 345 aa9.71□□□□□ -0.86
SDC1-206ENST00000482879 IL6RP08887 468 aaPredicted RBP9.71□□□□□ -0.86
SDC1-206ENST00000482879 OR9G9P0C7N8 305 aa9.71□□□□□ -0.86
SDC1-206ENST00000482879 P0C879 139 aa9.71□□□□□ -0.86
SDC1-206ENST00000482879 VDAC1P21796 283 aa9.71□□□□□ -0.86
SDC1-206ENST00000482879 PJVKQ0ZLH3 352 aa9.71□□□□□ -0.86
SDC1-206ENST00000482879 PRSS8Q16651 343 aa9.71□□□□□ -0.86
SDC1-206ENST00000482879 IZUMO4Q1ZYL8 232 aa9.71□□□□□ -0.86
SDC1-206ENST00000482879 FAM219AQ8IW50 185 aa9.71□□□□□ -0.86
SDC1-206ENST00000482879 MMD2Q8IY49 270 aa9.71□□□□□ -0.86
SDC1-206ENST00000482879 CADM3Q8N126 398 aa9.71□□□□□ -0.86
SDC1-206ENST00000482879 LSM10Q969L4 123 aaKnown RBP9.71□□□□□ -0.86
SDC1-206ENST00000482879 GPR146Q96CH1 333 aa9.71□□□□□ -0.86
SDC1-206ENST00000482879 PRSS22Q9GZN4 317 aa9.71□□□□□ -0.86
SDC1-206ENST00000482879 ZNF430Q9H8G1 570 aaPredicted RBP9.71□□□□□ -0.86
SDC1-206ENST00000482879 NSG2Q9Y328 171 aa9.71□□□□□ -0.86
SDC1-206ENST00000482879 ALG5Q9Y673 324 aa9.71□□□□□ -0.86
SDC1-206ENST00000482879 NF1P21359 2839 aa9.7□□□□□ -0.86
SDC1-206ENST00000482879 A0A0B4J293 547 aa9.7□□□□□ -0.86
SDC1-206ENST00000482879 C7orf66A4D0T2 115 aa9.7□□□□□ -0.86
SDC1-206ENST00000482879 SSNA1O43805 119 aa9.7□□□□□ -0.86
SDC1-206ENST00000482879 ADAP1O75689 374 aa9.7□□□□□ -0.86
SDC1-206ENST00000482879 ACTL6BO94805 426 aa9.7□□□□□ -0.86
SDC1-206ENST00000482879 CNIH1O95406 144 aa9.7□□□□□ -0.86
SDC1-206ENST00000482879 CA2P00918 260 aa9.7□□□□□ -0.86
SDC1-206ENST00000482879 IFNA21P01568 189 aa9.7□□□□□ -0.86
SDC1-206ENST00000482879 HLA-DRB1P01911 266 aa9.7□□□□□ -0.86
SDC1-206ENST00000482879 RPL15P61313 204 aaKnown RBP9.7□□□□□ -0.86
SDC1-206ENST00000482879 GNB1P62873 340 aa9.7□□□□□ -0.86
SDC1-206ENST00000482879 RPL8P62917 257 aaKnown RBP9.7□□□□□ -0.86
SDC1-206ENST00000482879 CX3CL1P78423 397 aa9.7□□□□□ -0.86
SDC1-206ENST00000482879 RELBQ01201 579 aa9.7□□□□□ -0.86
SDC1-206ENST00000482879 MRGPRG-AS1Q2M3A8 158 aa9.7□□□□□ -0.86
SDC1-206ENST00000482879 GGNBP1Q5YKI7 109 aa9.7□□□□□ -0.86
SDC1-206ENST00000482879 Q6ZS46 218 aa9.7□□□□□ -0.86
SDC1-206ENST00000482879 OR4A16Q8NH70 328 aa9.7□□□□□ -0.86
SDC1-206ENST00000482879 OR51J1Q9H342 316 aa9.7□□□□□ -0.86
SDC1-206ENST00000482879 TMED3Q9Y3Q3 217 aa9.7□□□□□ -0.86
SDC1-206ENST00000482879 IGHV7-81A0A0B4J1V7 117 aa9.69□□□□□ -0.86
SDC1-206ENST00000482879 DBX1A6NMT0 343 aa9.69□□□□□ -0.86
SDC1-206ENST00000482879 RBMXL2O75526 392 aaKnown RBP9.69□□□□□ -0.86
SDC1-206ENST00000482879 HLA-GP17693 338 aa9.69□□□□□ -0.86
SDC1-206ENST00000482879 OR2B8PP59922 312 aa9.69□□□□□ -0.86
SDC1-206ENST00000482879 FXYD3Q14802 87 aa9.69□□□□□ -0.86
SDC1-206ENST00000482879 TNXAQ16473 311 aa9.69□□□□□ -0.86
SDC1-206ENST00000482879 ARSJQ5FYB0 599 aaPredicted RBP9.69□□□□□ -0.86
SDC1-206ENST00000482879 NMSQ5H8A3 153 aa9.69□□□□□ -0.86
SDC1-206ENST00000482879 ZNF562Q6V9R5 426 aa9.69□□□□□ -0.86
SDC1-206ENST00000482879 Q6ZRM9 215 aa9.69□□□□□ -0.86
SDC1-206ENST00000482879 TAF15Q92804 592 aaKnown RBP eCLIP9.69□□□□□ -0.86
SDC1-206ENST00000482879 HSPB9Q9BQS6 159 aa9.69□□□□□ -0.86
SDC1-206ENST00000482879 CACNG5Q9UF02 275 aa9.69□□□□□ -0.86
SDC1-206ENST00000482879 PRNDQ9UKY0 176 aa9.69□□□□□ -0.86
SDC1-206ENST00000482879 A0A1B0GU03 582 aa9.68□□□□□ -0.86
SDC1-206ENST00000482879 LINC01548A6NM66 108 aa9.68□□□□□ -0.86
SDC1-206ENST00000482879 FAM25EA8MYX2 175 aa9.68□□□□□ -0.86
SDC1-206ENST00000482879 CCSO14618 274 aa9.68□□□□□ -0.86
SDC1-206ENST00000482879 IGHG2P01859 326 aa9.68□□□□□ -0.86
SDC1-206ENST00000482879 SULT1A3P0DMM9 295 aa9.68□□□□□ -0.86
SDC1-206ENST00000482879 SULT1A4P0DMN0 295 aa9.68□□□□□ -0.86
SDC1-206ENST00000482879 MYOD1P15172 320 aa9.68□□□□□ -0.86
SDC1-206ENST00000482879 MAS1LP35410 378 aa9.68□□□□□ -0.86
SDC1-206ENST00000482879 SMCO1Q147U7 214 aa9.68□□□□□ -0.86
SDC1-206ENST00000482879 THOC7Q6I9Y2 204 aaKnown RBP9.68□□□□□ -0.86
SDC1-206ENST00000482879 Q6ZSV7 163 aa9.68□□□□□ -0.86
SDC1-206ENST00000482879 SLC35E3Q7Z769 313 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms