RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 C17orf100A8MU93 164 aa11.36□□□□□ -0.59
CCDC88A-211ENST00000471947 K7N7A8 449 aa11.36□□□□□ -0.59
CCDC88A-211ENST00000471947 KITLGP21583 273 aa11.36□□□□□ -0.59
CCDC88A-211ENST00000471947 DUTP33316 252 aaKnown RBP11.36□□□□□ -0.59
CCDC88A-211ENST00000471947 SLC16A13Q7RTY0 426 aa11.36□□□□□ -0.59
CCDC88A-211ENST00000471947 LRTM2Q8N967 370 aa11.36□□□□□ -0.59
CCDC88A-211ENST00000471947 RAB24Q969Q5 203 aa11.36□□□□□ -0.59
CCDC88A-211ENST00000471947 MISP3Q96FF7 219 aa11.36□□□□□ -0.59
CCDC88A-211ENST00000471947 SERTAD4Q9NUC0 356 aa11.36□□□□□ -0.59
CCDC88A-211ENST00000471947 TIMM8BQ9Y5J9 83 aaPredicted RBP11.36□□□□□ -0.59
CCDC88A-211ENST00000471947 SVEP1Q4LDE5 3571 aa11.36□□□□□ -0.59
CCDC88A-211ENST00000471947 HCFC1P51610 2035 aa11.36□□□□□ -0.59
CCDC88A-211ENST00000471947 C1QTNF9BB2RNN3 333 aa11.36□□□□□ -0.59
CCDC88A-211ENST00000471947 J3QR06 171 aa11.36□□□□□ -0.59
CCDC88A-211ENST00000471947 DVL1O14640 695 aa11.36□□□□□ -0.59
CCDC88A-211ENST00000471947 C1QTNF9P0C862 333 aa11.36□□□□□ -0.59
CCDC88A-211ENST00000471947 RHEBQ15382 184 aa11.36□□□□□ -0.59
CCDC88A-211ENST00000471947 ACSM6Q6P461 480 aa11.36□□□□□ -0.59
CCDC88A-211ENST00000471947 C1orf162Q8NEQ5 155 aaPredicted RBP11.36□□□□□ -0.59
CCDC88A-211ENST00000471947 OR13D1Q8NGV5 346 aa11.36□□□□□ -0.59
CCDC88A-211ENST00000471947 CNIH1O95406 144 aa11.35□□□□□ -0.59
CCDC88A-211ENST00000471947 ADH4P08319 380 aa11.35□□□□□ -0.59
CCDC88A-211ENST00000471947 LGALS4P56470 323 aa11.35□□□□□ -0.59
CCDC88A-211ENST00000471947 Q8NA96 180 aa11.35□□□□□ -0.59
CCDC88A-211ENST00000471947 CABLES2Q9BTV7 478 aa11.35□□□□□ -0.59
CCDC88A-211ENST00000471947 MRPL20Q9BYC9 149 aaKnown RBP11.35□□□□□ -0.59
CCDC88A-211ENST00000471947 TCF19Q9Y242 345 aa11.35□□□□□ -0.59
CCDC88A-211ENST00000471947 MTORP42345 2549 aa11.35□□□□□ -0.59
CCDC88A-211ENST00000471947 DYSFO75923 2080 aa11.35□□□□□ -0.59
CCDC88A-211ENST00000471947 IGHV3OR16-8A0A075B7F1 116 aa11.35□□□□□ -0.59
CCDC88A-211ENST00000471947 PSMB3P49720 205 aa11.35□□□□□ -0.59
CCDC88A-211ENST00000471947 OR10A7Q8NGE5 316 aa11.35□□□□□ -0.59
CCDC88A-211ENST00000471947 ZNF251Q9BRH9 671 aa11.35□□□□□ -0.59
CCDC88A-211ENST00000471947 HBE1P02100 147 aa11.35□□□□□ -0.59
CCDC88A-211ENST00000471947 APOA2P02652 100 aa11.35□□□□□ -0.59
CCDC88A-211ENST00000471947 UBTD1Q9HAC8 227 aa11.35□□□□□ -0.59
CCDC88A-211ENST00000471947 MBNL3Q9NUK0 354 aaKnown RBP11.35□□□□□ -0.59
CCDC88A-211ENST00000471947 SORL1Q92673 2214 aa11.34□□□□□ -0.59
CCDC88A-211ENST00000471947 TGIF2-C20orf24A0A0A6YYL0 155 aa11.34□□□□□ -0.59
CCDC88A-211ENST00000471947 NDUFS7O75251 213 aa11.34□□□□□ -0.59
CCDC88A-211ENST00000471947 IFNA1P01562 189 aa11.34□□□□□ -0.59
CCDC88A-211ENST00000471947 CD1BP29016 333 aa11.34□□□□□ -0.59
CCDC88A-211ENST00000471947 OPRK1P41145 380 aa11.34□□□□□ -0.59
CCDC88A-211ENST00000471947 THBS3P49746 956 aa11.34□□□□□ -0.59
CCDC88A-211ENST00000471947 RAB4BP61018 213 aa11.34□□□□□ -0.59
CCDC88A-211ENST00000471947 SLC35B1P78383 322 aa11.34□□□□□ -0.59
CCDC88A-211ENST00000471947 RTL8BQ17RB0 113 aa11.34□□□□□ -0.59
CCDC88A-211ENST00000471947 FAM78BQ5VT40 261 aa11.34□□□□□ -0.59
CCDC88A-211ENST00000471947 IGFL2Q6UWQ7 119 aa11.34□□□□□ -0.59
CCDC88A-211ENST00000471947 MUC15Q8N387 334 aa11.34□□□□□ -0.59
CCDC88A-211ENST00000471947 OR4S2Q8NH73 311 aa11.34□□□□□ -0.59
CCDC88A-211ENST00000471947 TMEM106BQ9NUM4 274 aa11.34□□□□□ -0.59
CCDC88A-211ENST00000471947 RNF115Q9Y4L5 304 aa11.34□□□□□ -0.59
CCDC88A-211ENST00000471947 RAB29O14966 203 aa11.34□□□□□ -0.59
CCDC88A-211ENST00000471947 CDC34P49427 236 aaPredicted RBP11.34□□□□□ -0.59
CCDC88A-211ENST00000471947 OR4P4Q8NGL7 312 aa11.34□□□□□ -0.59
CCDC88A-211ENST00000471947 FASNP49327 2511 aaKnown RBP11.34□□□□□ -0.59
CCDC88A-211ENST00000471947 PRSS44E7EML9 344 aa11.34□□□□□ -0.59
CCDC88A-211ENST00000471947 HOXB1P14653 301 aaPredicted RBP11.34□□□□□ -0.59
CCDC88A-211ENST00000471947 TNXAQ16473 311 aa11.34□□□□□ -0.59
CCDC88A-211ENST00000471947 OR4A47Q6IF82 309 aa11.34□□□□□ -0.59
CCDC88A-211ENST00000471947 C1orf229Q6ZS94 237 aaPredicted RBP11.34□□□□□ -0.59
CCDC88A-211ENST00000471947 ZNF714Q96N38 554 aa11.34□□□□□ -0.59
CCDC88A-211ENST00000471947 FAM103A1Q9BTL3 118 aaKnown RBP11.34□□□□□ -0.59
CCDC88A-211ENST00000471947 TMEM147Q9BVK8 224 aa11.34□□□□□ -0.59
CCDC88A-211ENST00000471947 WDR61Q9GZS3 305 aaKnown RBP11.34□□□□□ -0.59
CCDC88A-211ENST00000471947 IGLV1-44P01699 117 aa11.33□□□□□ -0.6
CCDC88A-211ENST00000471947 RAB5CP51148 216 aa11.33□□□□□ -0.6
CCDC88A-211ENST00000471947 RPP25LQ8N5L8 163 aaKnown RBP11.33□□□□□ -0.6
CCDC88A-211ENST00000471947 OR51B2Q9Y5P1 312 aa11.33□□□□□ -0.6
CCDC88A-211ENST00000471947 KBTBD11-OT1A0A1B0GTJ5 212 aa11.33□□□□□ -0.6
CCDC88A-211ENST00000471947 PROP1O75360 226 aa11.33□□□□□ -0.6
CCDC88A-211ENST00000471947 IGKV1D-33P01593 117 aa11.33□□□□□ -0.6
CCDC88A-211ENST00000471947 IGKV1-33P01594 117 aa11.33□□□□□ -0.6
CCDC88A-211ENST00000471947 MGST1P10620 155 aaKnown RBP11.33□□□□□ -0.6
CCDC88A-211ENST00000471947 TIMP3P35625 211 aa11.33□□□□□ -0.6
CCDC88A-211ENST00000471947 NHLRC2Q8NBF2 726 aa11.33□□□□□ -0.6
CCDC88A-211ENST00000471947 ACTR3CQ9C0K3 210 aaPredicted RBP11.33□□□□□ -0.6
CCDC88A-211ENST00000471947 E7EQL1 145 aa11.33□□□□□ -0.6
CCDC88A-211ENST00000471947 YIF1AO95070 293 aa11.33□□□□□ -0.6
CCDC88A-211ENST00000471947 WNT2P09544 360 aa11.33□□□□□ -0.6
CCDC88A-211ENST00000471947 ORM2P19652 201 aa11.33□□□□□ -0.6
CCDC88A-211ENST00000471947 NPY1RP25929 384 aa11.33□□□□□ -0.6
CCDC88A-211ENST00000471947 FABP9Q0Z7S8 132 aa11.33□□□□□ -0.6
CCDC88A-211ENST00000471947 MBNL2Q5VZF2 373 aaKnown RBP11.33□□□□□ -0.6
CCDC88A-211ENST00000471947 HPRT1P00492 218 aa11.32□□□□□ -0.6
CCDC88A-211ENST00000471947 CA2P00918 260 aa11.32□□□□□ -0.6
CCDC88A-211ENST00000471947 PRR27Q6MZM9 219 aa11.32□□□□□ -0.6
CCDC88A-211ENST00000471947 Q8NFD4 153 aa11.32□□□□□ -0.6
CCDC88A-211ENST00000471947 RNASE6Q93091 150 aaKnown RBP11.32□□□□□ -0.6
CCDC88A-211ENST00000471947 MS4A5Q9H3V2 200 aa11.32□□□□□ -0.6
CCDC88A-211ENST00000471947 ACANP16112 2415 aa11.32□□□□□ -0.6
CCDC88A-211ENST00000471947 LYL1P12980 280 aa11.32□□□□□ -0.6
CCDC88A-211ENST00000471947 NBL1P41271 181 aa11.32□□□□□ -0.6
CCDC88A-211ENST00000471947 B2MP61769 119 aa11.32□□□□□ -0.6
CCDC88A-211ENST00000471947 TGIF2LXQ8IUE1 241 aa11.32□□□□□ -0.6
CCDC88A-211ENST00000471947 LFNGQ8NES3 379 aa11.32□□□□□ -0.6
CCDC88A-211ENST00000471947 BLNKQ8WV28 456 aa11.32□□□□□ -0.6
CCDC88A-211ENST00000471947 TMEM37Q8WXS4 190 aa11.32□□□□□ -0.6
CCDC88A-211ENST00000471947 PCGF1Q9BSM1 259 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 174.1 ms