RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 P0C879 139 aa11.44□□□□□ -0.58
USP49-201ENST00000373006 NTF3P20783 257 aa11.44□□□□□ -0.58
USP49-201ENST00000373006 ARR3P36575 388 aa11.44□□□□□ -0.58
USP49-201ENST00000373006 LTC4SQ16873 150 aa11.44□□□□□ -0.58
USP49-201ENST00000373006 PPP1R32Q7Z5V6 425 aa11.44□□□□□ -0.58
USP49-201ENST00000373006 LYG1Q8N1E2 194 aa11.44□□□□□ -0.58
USP49-201ENST00000373006 QTRT1Q9BXR0 403 aaKnown RBP11.44□□□□□ -0.58
USP49-201ENST00000373006 ZFHX4Q86UP3 3567 aa11.43□□□□□ -0.58
USP49-201ENST00000373006 IGKV3D-15A0A087WSY6 115 aa11.43□□□□□ -0.58
USP49-201ENST00000373006 LINC00473A8K010 186 aa11.43□□□□□ -0.58
USP49-201ENST00000373006 SH2D1BO14796 132 aa11.43□□□□□ -0.58
USP49-201ENST00000373006 CD99P14209 185 aa11.43□□□□□ -0.58
USP49-201ENST00000373006 CRISP2P16562 243 aa11.43□□□□□ -0.58
USP49-201ENST00000373006 LHX2P50458 406 aa11.43□□□□□ -0.58
USP49-201ENST00000373006 TPTE2P1Q5T6R2 138 aa11.43□□□□□ -0.58
USP49-201ENST00000373006 MRGPRDQ8TDS7 321 aa11.43□□□□□ -0.58
USP49-201ENST00000373006 ZC2HC1AQ96GY0 325 aa11.43□□□□□ -0.58
USP49-201ENST00000373006 LINC00470Q9BZP3 86 aa11.43□□□□□ -0.58
USP49-201ENST00000373006 TP73-AS1Q9UF72 201 aa11.43□□□□□ -0.58
USP49-201ENST00000373006 WNT9BO14905 357 aa11.43□□□□□ -0.58
USP49-201ENST00000373006 YPEL1O60688 119 aa11.43□□□□□ -0.58
USP49-201ENST00000373006 DUSP3P51452 185 aaPredicted RBP11.43□□□□□ -0.58
USP49-201ENST00000373006 TPPP2P59282 170 aa11.43□□□□□ -0.58
USP49-201ENST00000373006 GAGE1Q13065 139 aa11.43□□□□□ -0.58
USP49-201ENST00000373006 OR10G8Q8NGN5 311 aa11.43□□□□□ -0.58
USP49-201ENST00000373006 YPEL2Q96QA6 119 aa11.43□□□□□ -0.58
USP49-201ENST00000373006 KCNIP2Q9NS61 270 aa11.43□□□□□ -0.58
USP49-201ENST00000373006 C15orf62A8K5M9 175 aa11.42□□□□□ -0.58
USP49-201ENST00000373006 NEURL1O76050 574 aa11.42□□□□□ -0.58
USP49-201ENST00000373006 Q5PR19 223 aa11.42□□□□□ -0.58
USP49-201ENST00000373006 MRPL18Q9H0U6 180 aaKnown RBP11.42□□□□□ -0.58
USP49-201ENST00000373006 RPH3ALQ9UNE2 315 aa11.42□□□□□ -0.58
USP49-201ENST00000373006 WIPI2Q9Y4P8 454 aa11.42□□□□□ -0.58
USP49-201ENST00000373006 RRHO14718 337 aa11.42□□□□□ -0.58
USP49-201ENST00000373006 HBZP02008 142 aa11.42□□□□□ -0.58
USP49-201ENST00000373006 TIMP3P35625 211 aa11.42□□□□□ -0.58
USP49-201ENST00000373006 MAGEA5P43359 124 aa11.42□□□□□ -0.58
USP49-201ENST00000373006 CATR1Q13166 79 aa11.42□□□□□ -0.58
USP49-201ENST00000373006 SPATA45Q537H7 98 aa11.42□□□□□ -0.58
USP49-201ENST00000373006 LDLRAD2Q5SZI1 272 aa11.42□□□□□ -0.58
USP49-201ENST00000373006 MIC13Q5XKP0 118 aa11.42□□□□□ -0.58
USP49-201ENST00000373006 FBXW9Q5XUX1 488 aa11.42□□□□□ -0.58
USP49-201ENST00000373006 ZNF826PQ6ZT77 177 aa11.42□□□□□ -0.58
USP49-201ENST00000373006 NINJ1Q92982 152 aa11.42□□□□□ -0.58
USP49-201ENST00000373006 RTL8AQ9BWD3 113 aa11.42□□□□□ -0.58
USP49-201ENST00000373006 FAM234AQ9H0X4 552 aa11.42□□□□□ -0.58
USP49-201ENST00000373006 IER3P46695 156 aa11.42□□□□□ -0.58
USP49-201ENST00000373006 CLDN18P56856 261 aa11.42□□□□□ -0.58
USP49-201ENST00000373006 YPEL3P61236 119 aaPredicted RBP11.42□□□□□ -0.58
USP49-201ENST00000373006 VWC2Q2TAL6 325 aa11.42□□□□□ -0.58
USP49-201ENST00000373006 KRTCAP3Q53RY4 240 aa11.42□□□□□ -0.58
USP49-201ENST00000373006 VKORC1L1Q8N0U8 176 aa11.42□□□□□ -0.58
USP49-201ENST00000373006 SSMEM1Q8WWF3 244 aa11.42□□□□□ -0.58
USP49-201ENST00000373006 ST6GALNAC6Q969X2 333 aa11.42□□□□□ -0.58
USP49-201ENST00000373006 BOD1L1Q8NFC6 3051 aa11.42□□□□□ -0.58
USP49-201ENST00000373006 FCN1O00602 326 aa11.41□□□□□ -0.58
USP49-201ENST00000373006 TNFSF13O75888 250 aa11.41□□□□□ -0.58
USP49-201ENST00000373006 CLDN14O95500 239 aa11.41□□□□□ -0.58
USP49-201ENST00000373006 CELA3BP08861 270 aa11.41□□□□□ -0.58
USP49-201ENST00000373006 SSTR5P35346 364 aa11.41□□□□□ -0.58
USP49-201ENST00000373006 GABRA2P47869 451 aa11.41□□□□□ -0.58
USP49-201ENST00000373006 ERVK11-1P61568 191 aa11.41□□□□□ -0.58
USP49-201ENST00000373006 SUMO1P63165 101 aaKnown RBP11.41□□□□□ -0.58
USP49-201ENST00000373006 MDP1Q86V88 176 aa11.41□□□□□ -0.58
USP49-201ENST00000373006 WDR83OSQ9Y284 106 aa11.41□□□□□ -0.58
USP49-201ENST00000373006 RNF114Q9Y508 228 aa11.41□□□□□ -0.58
USP49-201ENST00000373006 CACNA1HO95180 2353 aa11.41□□□□□ -0.58
USP49-201ENST00000373006 HAND1O96004 215 aa11.41□□□□□ -0.58
USP49-201ENST00000373006 IGHV3-13P01766 116 aa11.41□□□□□ -0.58
USP49-201ENST00000373006 IGHV3-7P01780 117 aa11.41□□□□□ -0.58
USP49-201ENST00000373006 UBE2NP61088 152 aaKnown RBP11.41□□□□□ -0.58
USP49-201ENST00000373006 OR5AU1Q8NGC0 362 aa11.41□□□□□ -0.58
USP49-201ENST00000373006 STARD4Q96DR4 205 aa11.41□□□□□ -0.58
USP49-201ENST00000373006 GVINP1Q7Z2Y8 2422 aa11.41□□□□□ -0.58
USP49-201ENST00000373006 K7EN84 100 aa11.4□□□□□ -0.58
USP49-201ENST00000373006 OR9G9P0C7N8 305 aa11.4□□□□□ -0.58
USP49-201ENST00000373006 PDLIM3Q53GG5 364 aaPredicted RBP11.4□□□□□ -0.58
USP49-201ENST00000373006 PSG11Q9UQ72 335 aa11.4□□□□□ -0.58
USP49-201ENST00000373006 YTHDF2Q9Y5A9 579 aaKnown RBP11.4□□□□□ -0.58
USP49-201ENST00000373006 TIMM8BQ9Y5J9 83 aaPredicted RBP11.4□□□□□ -0.58
USP49-201ENST00000373006 CACNA1GO43497 2377 aa11.4□□□□□ -0.58
USP49-201ENST00000373006 DIRC3C9JPN6 131 aa11.4□□□□□ -0.58
USP49-201ENST00000373006 RAB29O14966 203 aa11.4□□□□□ -0.58
USP49-201ENST00000373006 RIPPLY3P57055 190 aa11.4□□□□□ -0.58
USP49-201ENST00000373006 PSG7Q13046 419 aa11.4□□□□□ -0.58
USP49-201ENST00000373006 TEX43Q6ZNM6 134 aa11.4□□□□□ -0.58
USP49-201ENST00000373006 DEFB123Q8N688 67 aa11.4□□□□□ -0.58
USP49-201ENST00000373006 ZNF596Q8TC21 504 aa11.4□□□□□ -0.58
USP49-201ENST00000373006 FAM122AQ96E09 287 aa11.4□□□□□ -0.58
USP49-201ENST00000373006 BOKQ9UMX3 212 aaPredicted RBP11.4□□□□□ -0.58
USP49-201ENST00000373006 PTPRZ1P23471 2315 aaPredicted RBP11.4□□□□□ -0.58
USP49-201ENST00000373006 RPL31P62899 125 aaKnown RBP11.4□□□□□ -0.59
USP49-201ENST00000373006 ZNF146Q15072 292 aa11.4□□□□□ -0.59
USP49-201ENST00000373006 TREML4Q6UXN2 200 aa11.4□□□□□ -0.59
USP49-201ENST00000373006 Q6ZR03 302 aa11.4□□□□□ -0.59
USP49-201ENST00000373006 LINC00696Q6ZRV3 163 aa11.4□□□□□ -0.59
USP49-201ENST00000373006 DCTN5Q9BTE1 182 aa11.4□□□□□ -0.59
USP49-201ENST00000373006 POLDIP2Q9Y2S7 368 aa11.4□□□□□ -0.59
USP49-201ENST00000373006 NDUFB8O95169 186 aa11.39□□□□□ -0.59
USP49-201ENST00000373006 PAFAH1B2P68402 229 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms