RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 Q6ZS49 121 aa7.42□□□□□ -1.22
USP4-202ENST00000351842 C12orf45Q8N5I9 185 aaPredicted RBP7.42□□□□□ -1.22
USP4-202ENST00000351842 RHOVQ96L33 236 aa7.42□□□□□ -1.22
USP4-202ENST00000351842 ZNF251Q9BRH9 671 aa7.42□□□□□ -1.22
USP4-202ENST00000351842 HLA-GP17693 338 aa7.42□□□□□ -1.22
USP4-202ENST00000351842 F2RL1P55085 397 aa7.42□□□□□ -1.22
USP4-202ENST00000351842 HABP2Q14520 560 aaPredicted RBP7.42□□□□□ -1.22
USP4-202ENST00000351842 LPCAT3Q6P1A2 487 aa7.42□□□□□ -1.22
USP4-202ENST00000351842 PHB2Q99623 299 aa7.42□□□□□ -1.22
USP4-202ENST00000351842 RSRP1Q9BUV0 290 aa7.42□□□□□ -1.22
USP4-202ENST00000351842 COA4Q9NYJ1 87 aa7.42□□□□□ -1.22
USP4-202ENST00000351842 ACTL6BO94805 426 aa7.42□□□□□ -1.22
USP4-202ENST00000351842 DEFA5Q01523 94 aa7.42□□□□□ -1.22
USP4-202ENST00000351842 RTL8BQ17RB0 113 aa7.42□□□□□ -1.22
USP4-202ENST00000351842 LYG2Q86SG7 212 aa7.42□□□□□ -1.22
USP4-202ENST00000351842 SLC25A42Q86VD7 318 aa7.42□□□□□ -1.22
USP4-202ENST00000351842 C11orf44Q8N8P7 122 aa7.42□□□□□ -1.22
USP4-202ENST00000351842 FLYWCH2Q96CP2 140 aaKnown RBP7.42□□□□□ -1.22
USP4-202ENST00000351842 SLC2A8Q9NY64 477 aa7.42□□□□□ -1.22
USP4-202ENST00000351842 AMMECR1Q9Y4X0 333 aaPredicted RBP7.42□□□□□ -1.22
USP4-202ENST00000351842 A0A0G2JRQ6 117 aa7.41□□□□□ -1.22
USP4-202ENST00000351842 CRYM-AS1A6NIL9 109 aa7.41□□□□□ -1.22
USP4-202ENST00000351842 SRRM4A7MD48 611 aaKnown RBP7.41□□□□□ -1.22
USP4-202ENST00000351842 HOXA3O43365 443 aaPredicted RBP7.41□□□□□ -1.22
USP4-202ENST00000351842 CNIH1O95406 144 aa7.41□□□□□ -1.22
USP4-202ENST00000351842 FBP1P09467 338 aa7.41□□□□□ -1.22
USP4-202ENST00000351842 TMEM11P17152 192 aa7.41□□□□□ -1.22
USP4-202ENST00000351842 ZP3P21754 424 aa7.41□□□□□ -1.22
USP4-202ENST00000351842 C19orf35Q6ZS72 473 aa7.41□□□□□ -1.22
USP4-202ENST00000351842 OR52M1Q8NGK5 317 aa7.41□□□□□ -1.22
USP4-202ENST00000351842 R3HDM4Q96D70 268 aa7.41□□□□□ -1.22
USP4-202ENST00000351842 NABP2Q9BQ15 211 aa7.41□□□□□ -1.22
USP4-202ENST00000351842 LIN7CQ9NUP9 197 aaKnown RBP7.41□□□□□ -1.22
USP4-202ENST00000351842 CACNG5Q9UF02 275 aa7.41□□□□□ -1.22
USP4-202ENST00000351842 LSM5Q9Y4Y9 91 aaKnown RBP7.41□□□□□ -1.22
USP4-202ENST00000351842 FSTL3O95633 263 aa7.41□□□□□ -1.22
USP4-202ENST00000351842 IFNA17P01571 189 aa7.41□□□□□ -1.22
USP4-202ENST00000351842 REG1AP05451 166 aa7.41□□□□□ -1.22
USP4-202ENST00000351842 SRD5A1P18405 259 aa7.41□□□□□ -1.22
USP4-202ENST00000351842 H2BFSP57053 126 aa7.41□□□□□ -1.22
USP4-202ENST00000351842 PAX5Q02548 391 aa7.41□□□□□ -1.22
USP4-202ENST00000351842 TMEM95Q3KNT9 176 aa7.41□□□□□ -1.22
USP4-202ENST00000351842 H2BFWTQ7Z2G1 175 aa7.41□□□□□ -1.22
USP4-202ENST00000351842 SIGLECL1Q8N7X8 197 aa7.41□□□□□ -1.22
USP4-202ENST00000351842 ZDHHC22Q8N966 263 aa7.41□□□□□ -1.22
USP4-202ENST00000351842 PCNPQ8WW12 178 aaKnown RBP7.41□□□□□ -1.22
USP4-202ENST00000351842 SEBOXQ9HB31 216 aaPredicted RBP7.41□□□□□ -1.22
USP4-202ENST00000351842 ANK3Q12955 4377 aaKnown RBP7.41□□□□□ -1.22
USP4-202ENST00000351842 DBX1A6NMT0 343 aa7.4□□□□□ -1.22
USP4-202ENST00000351842 MARCH11A6NNE9 402 aa7.4□□□□□ -1.22
USP4-202ENST00000351842 H0YJW9 148 aa7.4□□□□□ -1.22
USP4-202ENST00000351842 SFT2D2O95562 160 aa7.4□□□□□ -1.22
USP4-202ENST00000351842 BRWD1-AS2P59051 145 aa7.4□□□□□ -1.22
USP4-202ENST00000351842 ERVK-16P61578 105 aa7.4□□□□□ -1.22
USP4-202ENST00000351842 KRTAP1-1Q07627 177 aa7.4□□□□□ -1.22
USP4-202ENST00000351842 IAH1Q2TAA2 248 aaPredicted RBP7.4□□□□□ -1.22
USP4-202ENST00000351842 COQ8AQ8NI60 647 aa7.4□□□□□ -1.22
USP4-202ENST00000351842 SCARB1Q8WTV0 552 aa7.4□□□□□ -1.22
USP4-202ENST00000351842 RBPMSQ93062 196 aaKnown RBP7.4□□□□□ -1.22
USP4-202ENST00000351842 C1orf159Q96HA4 380 aa7.4□□□□□ -1.22
USP4-202ENST00000351842 HSD17B10Q99714 261 aaKnown RBP7.4□□□□□ -1.22
USP4-202ENST00000351842 PPP1R14DQ9NXH3 145 aa7.4□□□□□ -1.22
USP4-202ENST00000351842 A0A1W2PPI3 338 aa7.4□□□□□ -1.22
USP4-202ENST00000351842 IGHV3-48P01763 117 aa7.4□□□□□ -1.22
USP4-202ENST00000351842 NMBP08949 121 aa7.4□□□□□ -1.22
USP4-202ENST00000351842 IAPPP10997 89 aa7.4□□□□□ -1.22
USP4-202ENST00000351842 S100A11P31949 105 aa7.4□□□□□ -1.22
USP4-202ENST00000351842 RAB14P61106 215 aa7.4□□□□□ -1.22
USP4-202ENST00000351842 ZNF585BQ52M93 769 aa7.4□□□□□ -1.22
USP4-202ENST00000351842 METTL1Q9UBP6 276 aaKnown RBP7.4□□□□□ -1.22
USP4-202ENST00000351842 IGHV3-21A0A0B4J1V1 117 aa7.4□□□□□ -1.23
USP4-202ENST00000351842 FCN1O00602 326 aa7.4□□□□□ -1.23
USP4-202ENST00000351842 FGF2P09038 288 aa7.4□□□□□ -1.23
USP4-202ENST00000351842 TAS2R31P59538 309 aa7.4□□□□□ -1.23
USP4-202ENST00000351842 TNXAQ16473 311 aa7.4□□□□□ -1.23
USP4-202ENST00000351842 SRSF7Q16629 238 aaKnown RBP eCLIP7.4□□□□□ -1.23
USP4-202ENST00000351842 GGNBP1Q5YKI7 109 aa7.4□□□□□ -1.23
USP4-202ENST00000351842 HSD17B13Q7Z5P4 300 aaPredicted RBP7.4□□□□□ -1.23
USP4-202ENST00000351842 OR11H6Q8NGC7 330 aa7.4□□□□□ -1.23
USP4-202ENST00000351842 OR1S1Q8NH92 325 aa7.4□□□□□ -1.23
USP4-202ENST00000351842 OR10C1Q96KK4 312 aa7.4□□□□□ -1.23
USP4-202ENST00000351842 TMEM222Q9H0R3 208 aa7.4□□□□□ -1.23
USP4-202ENST00000351842 WASHC3Q9Y3C0 194 aa7.4□□□□□ -1.23
USP4-202ENST00000351842 HAX1O00165 279 aa7.39□□□□□ -1.23
USP4-202ENST00000351842 IGKV1-39P01597 117 aa7.39□□□□□ -1.23
USP4-202ENST00000351842 IGKV1D-39P04432 117 aa7.39□□□□□ -1.23
USP4-202ENST00000351842 SAA1P0DJI8 122 aaPredicted RBP7.39□□□□□ -1.23
USP4-202ENST00000351842 HNF1AP20823 631 aa7.39□□□□□ -1.23
USP4-202ENST00000351842 LY6G6FQ5SQ64 297 aa7.39□□□□□ -1.23
USP4-202ENST00000351842 OR4S2Q8NH73 311 aa7.39□□□□□ -1.23
USP4-202ENST00000351842 EAF1Q96JC9 268 aaPredicted RBP7.39□□□□□ -1.23
USP4-202ENST00000351842 GSN-AS1Q9NRJ2 163 aa7.39□□□□□ -1.23
USP4-202ENST00000351842 BTBD17A6NE02 478 aa7.39□□□□□ -1.23
USP4-202ENST00000351842 RNF212BA8MTL3 300 aa7.39□□□□□ -1.23
USP4-202ENST00000351842 WRBO00258 174 aa7.39□□□□□ -1.23
USP4-202ENST00000351842 VENTXO95231 258 aa7.39□□□□□ -1.23
USP4-202ENST00000351842 IFNA21P01568 189 aa7.39□□□□□ -1.23
USP4-202ENST00000351842 SLC25A4P12235 298 aa7.39□□□□□ -1.23
USP4-202ENST00000351842 BRS3P32247 399 aa7.39□□□□□ -1.23
USP4-202ENST00000351842 PCP4P48539 62 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms