RNA–Protein interactions for RNA: ENST00000340958.3

CLDN4-201, Transcript of claudin 4, humanhuman

APPRIS P1 BASIC

Gene CLDN4, Length 1,831 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4-201ENST00000340958 MMP9P14780 707 aa14.03□□□□□ -0.16
CLDN4-201ENST00000340958 RPL23AP62750 156 aaKnown RBP14.03□□□□□ -0.16
CLDN4-201ENST00000340958 MIDNQ504T8 468 aa14.03□□□□□ -0.16
CLDN4-201ENST00000340958 LHFPL4Q7Z7J7 247 aa14.03□□□□□ -0.16
CLDN4-201ENST00000340958 OR8H3Q8N146 312 aa14.03□□□□□ -0.16
CLDN4-201ENST00000340958 KCNRGQ8N5I3 272 aa14.03□□□□□ -0.16
CLDN4-201ENST00000340958 QTRT1Q9BXR0 403 aaKnown RBP14.03□□□□□ -0.16
CLDN4-201ENST00000340958 ACANP16112 2415 aa14.02□□□□□ -0.16
CLDN4-201ENST00000340958 RNF223E7ERA6 249 aa14.02□□□□□ -0.16
CLDN4-201ENST00000340958 LY6LH3BQJ8 138 aa14.02□□□□□ -0.16
CLDN4-201ENST00000340958 IFNA7P01567 189 aa14.02□□□□□ -0.16
CLDN4-201ENST00000340958 HKR1P10072 659 aa14.02□□□□□ -0.16
CLDN4-201ENST00000340958 IAPPP10997 89 aa14.02□□□□□ -0.16
CLDN4-201ENST00000340958 UBE2E1P51965 193 aa14.02□□□□□ -0.16
CLDN4-201ENST00000340958 UBE2KP61086 200 aa14.02□□□□□ -0.16
CLDN4-201ENST00000340958 TNFRSF9Q07011 255 aa14.02□□□□□ -0.16
CLDN4-201ENST00000340958 SSX2Q16385 188 aa14.02□□□□□ -0.16
CLDN4-201ENST00000340958 TOR2AQ5JU69 321 aa14.02□□□□□ -0.16
CLDN4-201ENST00000340958 CLLU1Q5K131 121 aa14.02□□□□□ -0.16
CLDN4-201ENST00000340958 AQP10Q96PS8 301 aa14.02□□□□□ -0.16
CLDN4-201ENST00000340958 RAB40CQ96S21 281 aa14.02□□□□□ -0.16
CLDN4-201ENST00000340958 MS4A7Q9GZW8 240 aaPredicted RBP14.02□□□□□ -0.16
CLDN4-201ENST00000340958 TMA7Q9Y2S6 64 aaKnown RBP14.02□□□□□ -0.16
CLDN4-201ENST00000340958 MSGN1A6NI15 193 aa14.01□□□□□ -0.17
CLDN4-201ENST00000340958 CEBPZOSA8MTT3 80 aa14.01□□□□□ -0.17
CLDN4-201ENST00000340958 PAX8Q06710 450 aa14.01□□□□□ -0.17
CLDN4-201ENST00000340958 EXOSC2Q13868 293 aaKnown RBP14.01□□□□□ -0.17
CLDN4-201ENST00000340958 TMEM177Q53S58 311 aa14.01□□□□□ -0.17
CLDN4-201ENST00000340958 MINOS1Q5TGZ0 78 aa14.01□□□□□ -0.17
CLDN4-201ENST00000340958 CCDC144NLQ6NUI1 221 aa14.01□□□□□ -0.17
CLDN4-201ENST00000340958 OR2C3Q8N628 320 aa14.01□□□□□ -0.17
CLDN4-201ENST00000340958 CLCC1Q96S66 551 aa14.01□□□□□ -0.17
CLDN4-201ENST00000340958 ARPC5LQ9BPX5 153 aa14.01□□□□□ -0.17
CLDN4-201ENST00000340958 SLC25A31Q9H0C2 315 aa14.01□□□□□ -0.17
CLDN4-201ENST00000340958 RBKSQ9H477 322 aa14.01□□□□□ -0.17
CLDN4-201ENST00000340958 MINOS1-NBL1R4GNA1 71 aa14.01□□□□□ -0.17
CLDN4-201ENST00000340958 BCL2L11O43521 198 aa14.01□□□□□ -0.17
CLDN4-201ENST00000340958 M6PRP20645 277 aa14.01□□□□□ -0.17
CLDN4-201ENST00000340958 GPR157Q5UAW9 335 aa14.01□□□□□ -0.17
CLDN4-201ENST00000340958 SUN5Q8TC36 379 aa14.01□□□□□ -0.17
CLDN4-201ENST00000340958 HIF1ANQ9NWT6 349 aa14.01□□□□□ -0.17
CLDN4-201ENST00000340958 HSPB7Q9UBY9 170 aa14.01□□□□□ -0.17
CLDN4-201ENST00000340958 CACFD1Q9UGQ2 172 aa14.01□□□□□ -0.17
CLDN4-201ENST00000340958 TRAV3A0A0B4J244 114 aa14□□□□□ -0.17
CLDN4-201ENST00000340958 FAM24AA6NFZ4 105 aa14□□□□□ -0.17
CLDN4-201ENST00000340958 SRRM4A7MD48 611 aaKnown RBP14□□□□□ -0.17
CLDN4-201ENST00000340958 SAA1P0DJI8 122 aaPredicted RBP14□□□□□ -0.17
CLDN4-201ENST00000340958 RELBQ01201 579 aa14□□□□□ -0.17
CLDN4-201ENST00000340958 VMA21Q3ZAQ7 101 aa14□□□□□ -0.17
CLDN4-201ENST00000340958 SPINK9Q5DT21 86 aa14□□□□□ -0.17
CLDN4-201ENST00000340958 LINC01356Q8N9X3 169 aa14□□□□□ -0.17
CLDN4-201ENST00000340958 MAPK1IP1LQ8NDC0 245 aa14□□□□□ -0.17
CLDN4-201ENST00000340958 VSTM2AQ8TAG5 236 aa14□□□□□ -0.17
CLDN4-201ENST00000340958 Q96MF0 132 aa14□□□□□ -0.17
CLDN4-201ENST00000340958 ZNF471Q9BX82 626 aaPredicted RBP14□□□□□ -0.17
CLDN4-201ENST00000340958 REG4Q9BYZ8 158 aa14□□□□□ -0.17
CLDN4-201ENST00000340958 C7orf69Q9H7B7 122 aa14□□□□□ -0.17
CLDN4-201ENST00000340958 LYRM2Q9NU23 88 aaPredicted RBP14□□□□□ -0.17
CLDN4-201ENST00000340958 PSENENQ9NZ42 101 aa14□□□□□ -0.17
CLDN4-201ENST00000340958 UBQLN2Q9UHD9 624 aa14□□□□□ -0.17
CLDN4-201ENST00000340958 TBL2Q9Y4P3 447 aaKnown RBP14□□□□□ -0.17
CLDN4-201ENST00000340958 TRAV20A0A0B4J274 112 aa13.99□□□□□ -0.17
CLDN4-201ENST00000340958 H3BP45 60 aa13.99□□□□□ -0.17
CLDN4-201ENST00000340958 TIMM23O14925 209 aa13.99□□□□□ -0.17
CLDN4-201ENST00000340958 LGALS7P47929 136 aa13.99□□□□□ -0.17
CLDN4-201ENST00000340958 POU2AF1Q16633 256 aa13.99□□□□□ -0.17
CLDN4-201ENST00000340958 PRSS57Q6UWY2 283 aa13.99□□□□□ -0.17
CLDN4-201ENST00000340958 PRNDQ9UKY0 176 aa13.99□□□□□ -0.17
CLDN4-201ENST00000340958 A0A1W2PPI3 338 aa13.99□□□□□ -0.17
CLDN4-201ENST00000340958 SLC51BQ86UW2 128 aa13.99□□□□□ -0.17
CLDN4-201ENST00000340958 LURAP1LQ8IV03 231 aa13.99□□□□□ -0.17
CLDN4-201ENST00000340958 DTD1Q8TEA8 209 aa13.99□□□□□ -0.17
CLDN4-201ENST00000340958 SMIM3Q9BZL3 60 aa13.99□□□□□ -0.17
CLDN4-201ENST00000340958 ENY2Q9NPA8 101 aa13.99□□□□□ -0.17
CLDN4-201ENST00000340958 BET1LQ9NYM9 111 aa13.99□□□□□ -0.17
CLDN4-201ENST00000340958 WSB1Q9Y6I7 421 aa13.99□□□□□ -0.17
CLDN4-201ENST00000340958 C15orf61A6NNL5 157 aa13.98□□□□□ -0.17
CLDN4-201ENST00000340958 OOSP1A8MZH6 123 aa13.98□□□□□ -0.17
CLDN4-201ENST00000340958 UPK2O00526 184 aa13.98□□□□□ -0.17
CLDN4-201ENST00000340958 NPFFO15130 113 aa13.98□□□□□ -0.17
CLDN4-201ENST00000340958 SPDEFO95238 335 aa13.98□□□□□ -0.17
CLDN4-201ENST00000340958 CFDP00746 253 aaPredicted RBP13.98□□□□□ -0.17
CLDN4-201ENST00000340958 SPCS3P61009 180 aa13.98□□□□□ -0.17
CLDN4-201ENST00000340958 LOXL1Q08397 574 aaPredicted RBP13.98□□□□□ -0.17
CLDN4-201ENST00000340958 HES1Q14469 280 aa13.98□□□□□ -0.17
CLDN4-201ENST00000340958 SPANXN5Q5MJ07 72 aa13.98□□□□□ -0.17
CLDN4-201ENST00000340958 LDLRAD2Q5SZI1 272 aa13.98□□□□□ -0.17
CLDN4-201ENST00000340958 CLEC9AQ6UXN8 241 aa13.98□□□□□ -0.17
CLDN4-201ENST00000340958 STX12Q86Y82 276 aa13.98□□□□□ -0.17
CLDN4-201ENST00000340958 CIB3Q96Q77 187 aaPredicted RBP13.98□□□□□ -0.17
CLDN4-201ENST00000340958 HINT2Q9BX68 163 aa13.98□□□□□ -0.17
CLDN4-201ENST00000340958 FKBP11Q9NYL4 201 aa13.98□□□□□ -0.17
CLDN4-201ENST00000340958 OR51B2Q9Y5P1 312 aa13.98□□□□□ -0.17
CLDN4-201ENST00000340958 IGHV3OR16-10A0A075B7F0 116 aa13.97□□□□□ -0.17
CLDN4-201ENST00000340958 SLC25A17O43808 307 aa13.97□□□□□ -0.17
CLDN4-201ENST00000340958 KBTBD11O94819 623 aa13.97□□□□□ -0.17
CLDN4-201ENST00000340958 GATA3P23771 443 aa13.97□□□□□ -0.17
CLDN4-201ENST00000340958 PAX6P26367 422 aa13.97□□□□□ -0.17
CLDN4-201ENST00000340958 HOXA1P49639 335 aaPredicted RBP13.97□□□□□ -0.17
CLDN4-201ENST00000340958 EWSR1Q01844 656 aaKnown RBP eCLIP13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms