RNA–Protein interactions for RNA: ENST00000635893.1

SCN1A-211, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 168 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-211ENST00000635893 SNAI1O95863 264 aaPredicted RBP-0.7□□□□□ -2.52
SCN1A-211ENST00000635893 ASS1P00966 412 aaKnown RBP-0.7□□□□□ -2.52
SCN1A-211ENST00000635893 CCL5P13501 91 aa-0.7□□□□□ -2.52
SCN1A-211ENST00000635893 ZNF345Q14585 488 aa-0.7□□□□□ -2.52
SCN1A-211ENST00000635893 TTC33Q6PID6 262 aaPredicted RBP-0.7□□□□□ -2.52
SCN1A-211ENST00000635893 YIPF3Q9GZM5 350 aa-0.7□□□□□ -2.52
SCN1A-211ENST00000635893 GAL3ST2Q9H3Q3 398 aa-0.7□□□□□ -2.52
SCN1A-211ENST00000635893 MAT2BQ9NZL9 334 aa-0.7□□□□□ -2.52
SCN1A-211ENST00000635893 SNX24Q9Y343 169 aa-0.7□□□□□ -2.52
SCN1A-211ENST00000635893 IGF2RP11717 2491 aa-0.7□□□□□ -2.52
SCN1A-211ENST00000635893 ABCC12Q96J65 1359 aa-0.7□□□□□ -2.52
SCN1A-211ENST00000635893 DOPEY1Q5JWR5 2465 aa-0.71□□□□□ -2.52
SCN1A-211ENST00000635893 TPRP12270 2363 aaKnown RBP-0.71□□□□□ -2.52
SCN1A-211ENST00000635893 GOLGA8IPA6NC78 632 aa-0.71□□□□□ -2.52
SCN1A-211ENST00000635893 PMP2P02689 132 aa-0.71□□□□□ -2.52
SCN1A-211ENST00000635893 SHBGP04278 402 aa-0.71□□□□□ -2.52
SCN1A-211ENST00000635893 ADORA1P30542 326 aa-0.71□□□□□ -2.52
SCN1A-211ENST00000635893 OR10A3P58181 314 aa-0.71□□□□□ -2.52
SCN1A-211ENST00000635893 UBE2KP61086 200 aa-0.71□□□□□ -2.52
SCN1A-211ENST00000635893 AP1S1P61966 158 aa-0.71□□□□□ -2.52
SCN1A-211ENST00000635893 TBPL1P62380 186 aa-0.71□□□□□ -2.52
SCN1A-211ENST00000635893 OR10J3Q5JRS4 329 aa-0.71□□□□□ -2.52
SCN1A-211ENST00000635893 C10orf67Q8IYJ2 551 aa-0.71□□□□□ -2.52
SCN1A-211ENST00000635893 ZNF418Q8TF45 676 aaPredicted RBP-0.71□□□□□ -2.52
SCN1A-211ENST00000635893 ACOT12Q8WYK0 555 aa-0.71□□□□□ -2.52
SCN1A-211ENST00000635893 LRRC39Q96DD0 335 aa-0.71□□□□□ -2.52
SCN1A-211ENST00000635893 CPNE2Q96FN4 548 aaPredicted RBP-0.71□□□□□ -2.52
SCN1A-211ENST00000635893 CATSPER2Q96P56 530 aa-0.71□□□□□ -2.52
SCN1A-211ENST00000635893 KLK9Q9UKQ9 250 aa-0.71□□□□□ -2.52
SCN1A-211ENST00000635893 CHD5Q8TDI0 1954 aa-0.71□□□□□ -2.52
SCN1A-211ENST00000635893 SIPA1L1O43166 1804 aa-0.71□□□□□ -2.52
SCN1A-211ENST00000635893 KIAA1109Q2LD37 5005 aa-0.71□□□□□ -2.52
SCN1A-211ENST00000635893 GREB1Q4ZG55 1949 aa-0.72□□□□□ -2.52
SCN1A-211ENST00000635893 COL1A1P02452 1464 aaPredicted RBP-0.72□□□□□ -2.52
SCN1A-211ENST00000635893 OTOGQ6ZRI0 2925 aa-0.72□□□□□ -2.52
SCN1A-211ENST00000635893 UBR4Q5T4S7 5183 aa-0.72□□□□□ -2.52
SCN1A-211ENST00000635893 A0A1B0GX12 115 aa-0.72□□□□□ -2.52
SCN1A-211ENST00000635893 M0R381 172 aa-0.72□□□□□ -2.52
SCN1A-211ENST00000635893 CRYGCP07315 174 aa-0.72□□□□□ -2.52
SCN1A-211ENST00000635893 KRTAP20-2Q3LI61 65 aa-0.72□□□□□ -2.52
SCN1A-211ENST00000635893 SPINK9Q5DT21 86 aa-0.72□□□□□ -2.52
SCN1A-211ENST00000635893 ZNF321PQ8N8H1 164 aa-0.72□□□□□ -2.52
SCN1A-211ENST00000635893 CLEC2DQ9UHP7 191 aa-0.72□□□□□ -2.52
SCN1A-211ENST00000635893 BAIAP2Q9UQB8 552 aa-0.72□□□□□ -2.52
SCN1A-211ENST00000635893 CRXO43186 299 aaPredicted RBP-0.73□□□□□ -2.53
SCN1A-211ENST00000635893 ARL6IP5O75915 188 aa-0.73□□□□□ -2.53
SCN1A-211ENST00000635893 F8A1P23610 371 aa-0.73□□□□□ -2.53
SCN1A-211ENST00000635893 BTN3A2P78410 334 aa-0.73□□□□□ -2.53
SCN1A-211ENST00000635893 BSXQ3C1V8 233 aa-0.73□□□□□ -2.53
SCN1A-211ENST00000635893 HSP90AA4PQ58FG1 418 aa-0.73□□□□□ -2.53
SCN1A-211ENST00000635893 SSX6Q7RTT6 188 aa-0.73□□□□□ -2.53
SCN1A-211ENST00000635893 GPHB5Q86YW7 130 aa-0.73□□□□□ -2.53
SCN1A-211ENST00000635893 MITD1Q8WV92 249 aa-0.73□□□□□ -2.53
SCN1A-211ENST00000635893 BORCS5Q969J3 196 aa-0.73□□□□□ -2.53
SCN1A-211ENST00000635893 METTL8Q9H825 291 aaKnown RBP-0.73□□□□□ -2.53
SCN1A-211ENST00000635893 TIMM22Q9Y584 194 aa-0.73□□□□□ -2.53
SCN1A-211ENST00000635893 E9PCH4 1651 aa-0.73□□□□□ -2.53
SCN1A-211ENST00000635893 USH2AO75445 5202 aa-0.73□□□□□ -2.53
SCN1A-211ENST00000635893 BDP1A6H8Y1 2624 aa-0.73□□□□□ -2.53
SCN1A-211ENST00000635893 TMEM269A0A1B0GVZ9 245 aa-0.74□□□□□ -2.53
SCN1A-211ENST00000635893 OR6C6A6NF89 314 aa-0.74□□□□□ -2.53
SCN1A-211ENST00000635893 C9JCJ5 164 aa-0.74□□□□□ -2.53
SCN1A-211ENST00000635893 CLDN25C9JDP6 229 aa-0.74□□□□□ -2.53
SCN1A-211ENST00000635893 M0R2N4 97 aa-0.74□□□□□ -2.53
SCN1A-211ENST00000635893 HBZP02008 142 aa-0.74□□□□□ -2.53
SCN1A-211ENST00000635893 ZNF25P17030 456 aaPredicted RBP-0.74□□□□□ -2.53
SCN1A-211ENST00000635893 MSNP26038 577 aaKnown RBP-0.74□□□□□ -2.53
SCN1A-211ENST00000635893 PSMD7P51665 324 aa-0.74□□□□□ -2.53
SCN1A-211ENST00000635893 VSNL1P62760 191 aa-0.74□□□□□ -2.53
SCN1A-211ENST00000635893 AHSA2Q719I0 299 aa-0.74□□□□□ -2.53
SCN1A-211ENST00000635893 SPATA24Q86W54 205 aa-0.74□□□□□ -2.53
SCN1A-211ENST00000635893 PDCL2Q8N4E4 241 aa-0.74□□□□□ -2.53
SCN1A-211ENST00000635893 NATD1Q8N6N6 113 aa-0.74□□□□□ -2.53
SCN1A-211ENST00000635893 IFT81Q8WYA0 676 aa-0.74□□□□□ -2.53
SCN1A-211ENST00000635893 C12orf43Q96C57 262 aaKnown RBP-0.74□□□□□ -2.53
SCN1A-211ENST00000635893 OR7D2Q96RA2 312 aa-0.74□□□□□ -2.53
SCN1A-211ENST00000635893 FAM103A1Q9BTL3 118 aaKnown RBP-0.74□□□□□ -2.53
SCN1A-211ENST00000635893 CD300AQ9UGN4 299 aa-0.74□□□□□ -2.53
SCN1A-211ENST00000635893 CREBBPQ92793 2442 aa-0.74□□□□□ -2.53
SCN1A-211ENST00000635893 NPATQ14207 1427 aa-0.74□□□□□ -2.53
SCN1A-211ENST00000635893 FLNAP21333 2647 aaKnown RBP-0.74□□□□□ -2.53
SCN1A-211ENST00000635893 PDZD2O15018 2839 aa-0.74□□□□□ -2.53
SCN1A-211ENST00000635893 COL4A5P29400 1685 aa-0.75□□□□□ -2.53
SCN1A-211ENST00000635893 HSPG2P98160 4391 aa-0.75□□□□□ -2.53
SCN1A-211ENST00000635893 PEAK1Q9H792 1746 aa-0.75□□□□□ -2.53
SCN1A-211ENST00000635893 KMT2AQ03164 3969 aa-0.75□□□□□ -2.53
SCN1A-211ENST00000635893 TRBV10-2A0A0K0K1G8 114 aa-0.75□□□□□ -2.53
SCN1A-211ENST00000635893 BRS3P32247 399 aa-0.75□□□□□ -2.53
SCN1A-211ENST00000635893 TMEM33P57088 247 aa-0.75□□□□□ -2.53
SCN1A-211ENST00000635893 AKR1C1Q04828 323 aa-0.75□□□□□ -2.53
SCN1A-211ENST00000635893 LCN8Q6JVE9 175 aa-0.75□□□□□ -2.53
SCN1A-211ENST00000635893 ZNF676Q8N7Q3 588 aa-0.75□□□□□ -2.53
SCN1A-211ENST00000635893 OR2Y1Q8NGV0 311 aa-0.75□□□□□ -2.53
SCN1A-211ENST00000635893 RPRD1BQ9NQG5 326 aaKnown RBP-0.75□□□□□ -2.53
SCN1A-211ENST00000635893 EMC3Q9P0I2 261 aa-0.75□□□□□ -2.53
SCN1A-211ENST00000635893 NXT1Q9UKK6 140 aaKnown RBP-0.75□□□□□ -2.53
SCN1A-211ENST00000635893 RABL2BQ9UNT1 228 aa-0.75□□□□□ -2.53
SCN1A-211ENST00000635893 NUP160Q12769 1436 aa-0.75□□□□□ -2.53
SCN1A-211ENST00000635893 STRCQ7RTU9 1775 aa-0.75□□□□□ -2.53
SCN1A-211ENST00000635893 C21orf140B9A014 251 aa-0.76□□□□□ -2.53
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms