RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 H2AFB1P0C5Y9 115 aa18.08■□□□□ 0.48
PNKP-220ENST00000627232 DLX6P56179 175 aa18.08■□□□□ 0.48
PNKP-220ENST00000627232 OR2B8PP59922 312 aa18.08■□□□□ 0.48
PNKP-220ENST00000627232 GNB2P62879 340 aa18.08■□□□□ 0.48
PNKP-220ENST00000627232 RPP30P78346 268 aaKnown RBP18.08■□□□□ 0.48
PNKP-220ENST00000627232 TLE4Q04727 773 aa18.08■□□□□ 0.48
PNKP-220ENST00000627232 SP5Q6BEB4 398 aaPredicted RBP18.08■□□□□ 0.48
PNKP-220ENST00000627232 OR8G2PQ6IF36 304 aa18.08■□□□□ 0.48
PNKP-220ENST00000627232 ATRAIDQ6UW56 229 aa18.08■□□□□ 0.48
PNKP-220ENST00000627232 OR10P1Q8NGE3 313 aa18.08■□□□□ 0.48
PNKP-220ENST00000627232 FAM157AC9JC47 383 aa18.07■□□□□ 0.48
PNKP-220ENST00000627232 SFTA3P0C7M3 94 aa18.07■□□□□ 0.48
PNKP-220ENST00000627232 CT45A6P0DMU7 189 aa18.07■□□□□ 0.48
PNKP-220ENST00000627232 CT45A5P0DMU8 189 aa18.07■□□□□ 0.48
PNKP-220ENST00000627232 CT45A7P0DMV0 189 aa18.07■□□□□ 0.48
PNKP-220ENST00000627232 TAGLNQ01995 201 aaKnown RBP18.07■□□□□ 0.48
PNKP-220ENST00000627232 BTN1A1Q13410 526 aa18.07■□□□□ 0.48
PNKP-220ENST00000627232 RTL8BQ17RB0 113 aa18.07■□□□□ 0.48
PNKP-220ENST00000627232 TMEM155Q4W5P6 130 aa18.07■□□□□ 0.48
PNKP-220ENST00000627232 FAM71F2Q6NXP2 309 aa18.07■□□□□ 0.48
PNKP-220ENST00000627232 PUSL1Q8N0Z8 303 aaKnown RBP18.07■□□□□ 0.48
PNKP-220ENST00000627232 TAF15Q92804 592 aaKnown RBP eCLIP18.07■□□□□ 0.48
PNKP-220ENST00000627232 NKX6-2Q9C056 277 aaPredicted RBP18.07■□□□□ 0.48
PNKP-220ENST00000627232 SMDT1Q9H4I9 107 aa18.07■□□□□ 0.48
PNKP-220ENST00000627232 FBXO7Q9Y3I1 522 aa18.07■□□□□ 0.48
PNKP-220ENST00000627232 HBE1P02100 147 aa18.06■□□□□ 0.48
PNKP-220ENST00000627232 ARG1P05089 322 aa18.06■□□□□ 0.48
PNKP-220ENST00000627232 COL8A2P25067 703 aa18.06■□□□□ 0.48
PNKP-220ENST00000627232 VWC2Q2TAL6 325 aa18.06■□□□□ 0.48
PNKP-220ENST00000627232 SPSB3Q6PJ21 355 aa18.06■□□□□ 0.48
PNKP-220ENST00000627232 CENPVQ7Z7K6 275 aaPredicted RBP18.06■□□□□ 0.48
PNKP-220ENST00000627232 RHOVQ96L33 236 aa18.06■□□□□ 0.48
PNKP-220ENST00000627232 AIFM2Q9BRQ8 373 aa18.06■□□□□ 0.48
PNKP-220ENST00000627232 SPTBN4Q9H254 2564 aa18.06■□□□□ 0.48
PNKP-220ENST00000627232 A0A087X0M5 115 aa18.05■□□□□ 0.48
PNKP-220ENST00000627232 A0A1B0GX30 115 aa18.05■□□□□ 0.48
PNKP-220ENST00000627232 C15orf61A6NNL5 157 aa18.05■□□□□ 0.48
PNKP-220ENST00000627232 IGHV2-70P01814 119 aa18.05■□□□□ 0.48
PNKP-220ENST00000627232 VKORC1L1Q8N0U8 176 aa18.05■□□□□ 0.48
PNKP-220ENST00000627232 RSG1Q9BU20 258 aa18.05■□□□□ 0.48
PNKP-220ENST00000627232 RAB1BQ9H0U4 201 aa18.05■□□□□ 0.48
PNKP-220ENST00000627232 SLC35D1Q9NTN3 355 aa18.05■□□□□ 0.48
PNKP-220ENST00000627232 CBLN4Q9NTU7 201 aa18.05■□□□□ 0.48
PNKP-220ENST00000627232 FOXA2Q9Y261 457 aaPredicted RBP18.05■□□□□ 0.48
PNKP-220ENST00000627232 TRAV1-1A0A0B4J248 108 aa18.04■□□□□ 0.48
PNKP-220ENST00000627232 UBE2L5PA0A1B0GUS4 154 aa18.04■□□□□ 0.48
PNKP-220ENST00000627232 C15orf62A8K5M9 175 aa18.04■□□□□ 0.48
PNKP-220ENST00000627232 SNAPINO95295 136 aa18.04■□□□□ 0.48
PNKP-220ENST00000627232 VDAC2P45880 294 aaPredicted RBP18.04■□□□□ 0.48
PNKP-220ENST00000627232 RAB2AP61019 212 aa18.04■□□□□ 0.48
PNKP-220ENST00000627232 GUCA2BQ16661 112 aa18.04■□□□□ 0.48
PNKP-220ENST00000627232 OR4A47Q6IF82 309 aa18.04■□□□□ 0.48
PNKP-220ENST00000627232 TMA7Q9Y2S6 64 aaKnown RBP18.04■□□□□ 0.48
PNKP-220ENST00000627232 KPTNQ9Y664 436 aa18.04■□□□□ 0.48
PNKP-220ENST00000627232 TRAV3A0A0B4J244 114 aa18.03■□□□□ 0.48
PNKP-220ENST00000627232 MED19A0JLT2 244 aaPredicted RBP18.03■□□□□ 0.48
PNKP-220ENST00000627232 C9JQL5 133 aa18.03■□□□□ 0.48
PNKP-220ENST00000627232 GPR37O15354 613 aa18.03■□□□□ 0.48
PNKP-220ENST00000627232 IL6RP08887 468 aaPredicted RBP18.03■□□□□ 0.48
PNKP-220ENST00000627232 SPINK9Q5DT21 86 aa18.03■□□□□ 0.48
PNKP-220ENST00000627232 EIF5A2Q9GZV4 153 aaKnown RBP18.03■□□□□ 0.48
PNKP-220ENST00000627232 TMEM14BQ9NUH8 114 aa18.03■□□□□ 0.48
PNKP-220ENST00000627232 KIAA1456Q9P272 454 aa18.03■□□□□ 0.48
PNKP-220ENST00000627232 TCF19Q9Y242 345 aa18.03■□□□□ 0.48
PNKP-220ENST00000627232 ROS1P08922 2347 aa18.03■□□□□ 0.48
PNKP-220ENST00000627232 J3QR06 171 aa18.03■□□□□ 0.48
PNKP-220ENST00000627232 ERVFRD-1P60508 538 aa18.03■□□□□ 0.48
PNKP-220ENST00000627232 C4orf17Q53FE4 359 aa18.03■□□□□ 0.48
PNKP-220ENST00000627232 OR13D1Q8NGV5 346 aa18.03■□□□□ 0.48
PNKP-220ENST00000627232 TMEM186Q96B77 213 aa18.03■□□□□ 0.48
PNKP-220ENST00000627232 RBMXL1Q96E39 390 aaKnown RBP18.03■□□□□ 0.48
PNKP-220ENST00000627232 RALYQ9UKM9 306 aaKnown RBP18.03■□□□□ 0.48
PNKP-220ENST00000627232 DOCK11Q5JSL3 2073 aa18.02■□□□□ 0.48
PNKP-220ENST00000627232 TET2Q6N021 2002 aaPredicted RBP18.02■□□□□ 0.48
PNKP-220ENST00000627232 APOA2P02652 100 aa18.02■□□□□ 0.47
PNKP-220ENST00000627232 HSPE1P61604 102 aaKnown RBP18.02■□□□□ 0.47
PNKP-220ENST00000627232 TMEM41BQ5BJD5 291 aa18.02■□□□□ 0.47
PNKP-220ENST00000627232 C11orf71Q6IPW1 123 aa18.02■□□□□ 0.47
PNKP-220ENST00000627232 HEYLQ9NQ87 328 aaPredicted RBP18.02■□□□□ 0.47
PNKP-220ENST00000627232 PRNDQ9UKY0 176 aa18.02■□□□□ 0.47
PNKP-220ENST00000627232 PKDREJQ9NTG1 2253 aa18.01■□□□□ 0.47
PNKP-220ENST00000627232 LYNX1G3V0Z9 82 aa18.01■□□□□ 0.47
PNKP-220ENST00000627232 LYNX1P0DP58 116 aa18.01■□□□□ 0.47
PNKP-220ENST00000627232 AGAP20933 346 aa18.01■□□□□ 0.47
PNKP-220ENST00000627232 MDKP21741 143 aaPredicted RBP18.01■□□□□ 0.47
PNKP-220ENST00000627232 ZNF137PP52743 207 aa18.01■□□□□ 0.47
PNKP-220ENST00000627232 ZNF841Q6ZN19 808 aa18.01■□□□□ 0.47
PNKP-220ENST00000627232 SREK1IP1Q8N9Q2 155 aaPredicted RBP18.01■□□□□ 0.47
PNKP-220ENST00000627232 OR9G1Q8NH87 305 aa18.01■□□□□ 0.47
PNKP-220ENST00000627232 OSR1Q8TAX0 266 aaPredicted RBP18.01■□□□□ 0.47
PNKP-220ENST00000627232 NEU4Q8WWR8 484 aaPredicted RBP18.01■□□□□ 0.47
PNKP-220ENST00000627232 MBD3L1Q8WWY6 194 aa18.01■□□□□ 0.47
PNKP-220ENST00000627232 RPRMQ9NS64 109 aa18.01■□□□□ 0.47
PNKP-220ENST00000627232 ZNRD1Q9P1U0 126 aa18.01■□□□□ 0.47
PNKP-220ENST00000627232 DNASE2O00115 360 aaPredicted RBP18■□□□□ 0.47
PNKP-220ENST00000627232 UPK2O00526 184 aa18■□□□□ 0.47
PNKP-220ENST00000627232 IGHV1-8P0DP01 117 aa18■□□□□ 0.47
PNKP-220ENST00000627232 OR5AN1Q8NGI8 311 aa18■□□□□ 0.47
PNKP-220ENST00000627232 SFT2D1Q8WV19 159 aa18■□□□□ 0.47
PNKP-220ENST00000627232 GGACTQ9BVM4 153 aa18■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms