RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 DCSTAMPQ9H295 470 aa5.8□□□□□ -1.48
CUX1-219ENST00000606749 ZNF430Q9H8G1 570 aaPredicted RBP5.8□□□□□ -1.48
CUX1-219ENST00000606749 AKIP1Q9NQ31 210 aa5.8□□□□□ -1.48
CUX1-219ENST00000606749 TXNL4BQ9NX01 149 aaKnown RBP5.8□□□□□ -1.48
CUX1-219ENST00000606749 RAB26Q9ULW5 256 aa5.8□□□□□ -1.48
CUX1-219ENST00000606749 OR2W1Q9Y3N9 320 aa5.8□□□□□ -1.48
CUX1-219ENST00000606749 TNCP24821 2201 aa5.79□□□□□ -1.48
CUX1-219ENST00000606749 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP5.79□□□□□ -1.48
CUX1-219ENST00000606749 IGKV1D-13A0A0B4J2D9 117 aa5.79□□□□□ -1.48
CUX1-219ENST00000606749 TMEM235A6NFC5 223 aa5.79□□□□□ -1.48
CUX1-219ENST00000606749 FAM223BA6NKX1 122 aa5.79□□□□□ -1.48
CUX1-219ENST00000606749 MPPED1O15442 326 aa5.79□□□□□ -1.48
CUX1-219ENST00000606749 TUSC2O75896 110 aa5.79□□□□□ -1.48
CUX1-219ENST00000606749 SLC22A5O76082 557 aa5.79□□□□□ -1.48
CUX1-219ENST00000606749 ACTL6BO94805 426 aa5.79□□□□□ -1.48
CUX1-219ENST00000606749 OR2A4O95047 310 aa5.79□□□□□ -1.48
CUX1-219ENST00000606749 SAA1P0DJI8 122 aaPredicted RBP5.79□□□□□ -1.48
CUX1-219ENST00000606749 IGKV1-13P0DP09 117 aa5.79□□□□□ -1.48
CUX1-219ENST00000606749 BRWD1-AS2P59051 145 aa5.79□□□□□ -1.48
CUX1-219ENST00000606749 GABARAPL2P60520 117 aa5.79□□□□□ -1.48
CUX1-219ENST00000606749 RHOGP84095 191 aa5.79□□□□□ -1.48
CUX1-219ENST00000606749 ZNF45Q02386 682 aa5.79□□□□□ -1.48
CUX1-219ENST00000606749 ATP5G2Q06055 141 aa5.79□□□□□ -1.48
CUX1-219ENST00000606749 EIF4EBP1Q13541 118 aaPredicted RBP5.79□□□□□ -1.48
CUX1-219ENST00000606749 CDK10Q15131 360 aa5.79□□□□□ -1.48
CUX1-219ENST00000606749 RPEL1Q2QD12 228 aa5.79□□□□□ -1.48
CUX1-219ENST00000606749 CNIH2Q6PI25 160 aa5.79□□□□□ -1.48
CUX1-219ENST00000606749 FAM223AQ8IWN6 122 aa5.79□□□□□ -1.48
CUX1-219ENST00000606749 MMD2Q8IY49 270 aa5.79□□□□□ -1.48
CUX1-219ENST00000606749 SPARTQ8N0X7 666 aa5.79□□□□□ -1.48
CUX1-219ENST00000606749 SPIN2AQ99865 258 aa5.79□□□□□ -1.48
CUX1-219ENST00000606749 SPIN2BQ9BPZ2 258 aa5.79□□□□□ -1.48
CUX1-219ENST00000606749 OR51E2Q9H255 320 aa5.79□□□□□ -1.48
CUX1-219ENST00000606749 DAPK2Q9UIK4 370 aa5.79□□□□□ -1.48
CUX1-219ENST00000606749 RBMX2Q9Y388 322 aaKnown RBP5.79□□□□□ -1.48
CUX1-219ENST00000606749 PRELID3BQ9Y3B1 194 aa5.79□□□□□ -1.48
CUX1-219ENST00000606749 IZUMO1RA6ND01 250 aa5.78□□□□□ -1.48
CUX1-219ENST00000606749 HMX3A6NHT5 357 aa5.78□□□□□ -1.48
CUX1-219ENST00000606749 E7EUB6 86 aa5.78□□□□□ -1.48
CUX1-219ENST00000606749 BMPR1BO00238 502 aa5.78□□□□□ -1.48
CUX1-219ENST00000606749 AIREO43918 545 aa5.78□□□□□ -1.48
CUX1-219ENST00000606749 SSX5O60225 188 aa5.78□□□□□ -1.48
CUX1-219ENST00000606749 CREBL2O60519 120 aaPredicted RBP5.78□□□□□ -1.48
CUX1-219ENST00000606749 CD36P16671 472 aa5.78□□□□□ -1.48
CUX1-219ENST00000606749 PSMB9P28065 219 aa5.78□□□□□ -1.48
CUX1-219ENST00000606749 EXOSC2Q13868 293 aaKnown RBP5.78□□□□□ -1.48
CUX1-219ENST00000606749 HAGHQ16775 308 aa5.78□□□□□ -1.48
CUX1-219ENST00000606749 OR2B11Q5JQS5 317 aa5.78□□□□□ -1.48
CUX1-219ENST00000606749 C10orf55Q5SWW7 151 aa5.78□□□□□ -1.48
CUX1-219ENST00000606749 LCN12Q6JVE5 192 aa5.78□□□□□ -1.48
CUX1-219ENST00000606749 ADAMTSL5Q6ZMM2 481 aa5.78□□□□□ -1.48
CUX1-219ENST00000606749 KCTD9Q7L273 389 aa5.78□□□□□ -1.48
CUX1-219ENST00000606749 SLC25A42Q86VD7 318 aa5.78□□□□□ -1.48
CUX1-219ENST00000606749 VKORC1L1Q8N0U8 176 aa5.78□□□□□ -1.48
CUX1-219ENST00000606749 Q8N402 240 aa5.78□□□□□ -1.48
CUX1-219ENST00000606749 MFSD4AQ8N468 514 aa5.78□□□□□ -1.48
CUX1-219ENST00000606749 NECAP1Q8NC96 275 aa5.78□□□□□ -1.48
CUX1-219ENST00000606749 NUDCD2Q8WVJ2 157 aa5.78□□□□□ -1.48
CUX1-219ENST00000606749 FCGR1BQ92637 280 aa5.78□□□□□ -1.48
CUX1-219ENST00000606749 HSD17B10Q99714 261 aaKnown RBP5.78□□□□□ -1.48
CUX1-219ENST00000606749 TUBA4BQ9H853 241 aa5.78□□□□□ -1.48
CUX1-219ENST00000606749 EDA2RQ9HAV5 297 aa5.78□□□□□ -1.48
CUX1-219ENST00000606749 PEMTQ9UBM1 199 aa5.78□□□□□ -1.48
CUX1-219ENST00000606749 ANXA10Q9UJ72 324 aa5.78□□□□□ -1.48
CUX1-219ENST00000606749 SPATA2Q9UM82 520 aa5.78□□□□□ -1.48
CUX1-219ENST00000606749 SSR3Q9UNL2 185 aa5.78□□□□□ -1.48
CUX1-219ENST00000606749 MRPS7Q9Y2R9 242 aaKnown RBP5.78□□□□□ -1.48
CUX1-219ENST00000606749 RRP15Q9Y3B9 282 aaKnown RBP5.78□□□□□ -1.48
CUX1-219ENST00000606749 DMRT1Q9Y5R6 373 aa5.78□□□□□ -1.48
CUX1-219ENST00000606749 HUWE1Q7Z6Z7 4374 aaKnown RBP5.78□□□□□ -1.48
CUX1-219ENST00000606749 A0A1B0GW64 132 aa5.77□□□□□ -1.49
CUX1-219ENST00000606749 ZNF785A8K8V0 405 aa5.77□□□□□ -1.49
CUX1-219ENST00000606749 TEX22C9J3V5 150 aa5.77□□□□□ -1.49
CUX1-219ENST00000606749 OR2J3O76001 311 aa5.77□□□□□ -1.49
CUX1-219ENST00000606749 SCGNO76038 276 aa5.77□□□□□ -1.49
CUX1-219ENST00000606749 IL6RP08887 468 aaPredicted RBP5.77□□□□□ -1.49
CUX1-219ENST00000606749 SDC2P34741 201 aa5.77□□□□□ -1.49
CUX1-219ENST00000606749 GNG2P59768 71 aa5.77□□□□□ -1.49
CUX1-219ENST00000606749 DEFB114Q30KQ6 69 aa5.77□□□□□ -1.49
CUX1-219ENST00000606749 C15orf32Q32M92 178 aa5.77□□□□□ -1.49
CUX1-219ENST00000606749 CD300EQ496F6 205 aaPredicted RBP5.77□□□□□ -1.49
CUX1-219ENST00000606749 SFXN4Q6P4A7 337 aa5.77□□□□□ -1.49
CUX1-219ENST00000606749 ZNF66Q6ZN08 573 aa5.77□□□□□ -1.49
CUX1-219ENST00000606749 GTSCR1Q86UQ5 136 aa5.77□□□□□ -1.49
CUX1-219ENST00000606749 PUSL1Q8N0Z8 303 aaKnown RBP5.77□□□□□ -1.49
CUX1-219ENST00000606749 OR2K2Q8NGT1 345 aa5.77□□□□□ -1.49
CUX1-219ENST00000606749 OR4S2Q8NH73 311 aa5.77□□□□□ -1.49
CUX1-219ENST00000606749 VSTM2AQ8TAG5 236 aa5.77□□□□□ -1.49
CUX1-219ENST00000606749 TMEM167AQ8TBQ9 72 aa5.77□□□□□ -1.49
CUX1-219ENST00000606749 LGALS14Q8TCE9 139 aa5.77□□□□□ -1.49
CUX1-219ENST00000606749 TCTEX1D2Q8WW35 142 aa5.77□□□□□ -1.49
CUX1-219ENST00000606749 KCTD12Q96CX2 325 aaKnown RBP5.77□□□□□ -1.49
CUX1-219ENST00000606749 FANCD2OSQ96PS1 177 aa5.77□□□□□ -1.49
CUX1-219ENST00000606749 OR2A7Q96R45 310 aa5.77□□□□□ -1.49
CUX1-219ENST00000606749 GPHA2Q96T91 129 aa5.77□□□□□ -1.49
CUX1-219ENST00000606749 YTHDF1Q9BYJ9 559 aaKnown RBP5.77□□□□□ -1.49
CUX1-219ENST00000606749 PALMDQ9NP74 551 aa5.77□□□□□ -1.49
CUX1-219ENST00000606749 SLC2A9Q9NRM0 540 aa5.77□□□□□ -1.49
CUX1-219ENST00000606749 GAR1Q9NY12 217 aaKnown RBP5.77□□□□□ -1.49
CUX1-219ENST00000606749 ZNF257Q9Y2Q1 563 aa5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms