RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 AP3S1Q92572 193 aa8.14□□□□□ -1.11
LIG3-212ENST00000590181 CYYR1Q96J86 154 aa8.14□□□□□ -1.11
LIG3-212ENST00000590181 SCPEP1Q9HB40 452 aa8.14□□□□□ -1.11
LIG3-212ENST00000590181 FAM212BQ9NTI7 297 aaPredicted RBP8.14□□□□□ -1.11
LIG3-212ENST00000590181 FAM223BA6NKX1 122 aa8.13□□□□□ -1.11
LIG3-212ENST00000590181 SULT1C2O00338 296 aa8.13□□□□□ -1.11
LIG3-212ENST00000590181 SSX5O60225 188 aa8.13□□□□□ -1.11
LIG3-212ENST00000590181 OR2A4O95047 310 aa8.13□□□□□ -1.11
LIG3-212ENST00000590181 TRGV3P03979 118 aa8.13□□□□□ -1.11
LIG3-212ENST00000590181 OR9G9P0C7N8 305 aa8.13□□□□□ -1.11
LIG3-212ENST00000590181 NAT1P18440 290 aa8.13□□□□□ -1.11
LIG3-212ENST00000590181 PRSS3P35030 304 aa8.13□□□□□ -1.11
LIG3-212ENST00000590181 RORCP51449 518 aa8.13□□□□□ -1.11
LIG3-212ENST00000590181 RAB25P57735 213 aa8.13□□□□□ -1.11
LIG3-212ENST00000590181 TPPP2P59282 170 aa8.13□□□□□ -1.11
LIG3-212ENST00000590181 TMEM69Q5SWH9 247 aa8.13□□□□□ -1.11
LIG3-212ENST00000590181 C18orf65Q6ZTR6 163 aa8.13□□□□□ -1.11
LIG3-212ENST00000590181 FAM223AQ8IWN6 122 aa8.13□□□□□ -1.11
LIG3-212ENST00000590181 MFSD4AQ8N468 514 aa8.13□□□□□ -1.11
LIG3-212ENST00000590181 OR2A7Q96R45 310 aa8.13□□□□□ -1.11
LIG3-212ENST00000590181 CLCC1Q96S66 551 aa8.13□□□□□ -1.11
LIG3-212ENST00000590181 SRSF8Q9BRL6 282 aaKnown RBP8.13□□□□□ -1.11
LIG3-212ENST00000590181 DCUN1D5Q9BTE7 237 aa8.13□□□□□ -1.11
LIG3-212ENST00000590181 TINAGL1Q9GZM7 467 aaPredicted RBP8.13□□□□□ -1.11
LIG3-212ENST00000590181 IFT46Q9NQC8 304 aa8.13□□□□□ -1.11
LIG3-212ENST00000590181 RABL2AQ9UBK7 228 aaPredicted RBP8.13□□□□□ -1.11
LIG3-212ENST00000590181 RABL2BQ9UNT1 228 aa8.13□□□□□ -1.11
LIG3-212ENST00000590181 IGKV1D-8A0A087WSZ0 117 aa8.12□□□□□ -1.11
LIG3-212ENST00000590181 SMIM30A4D0T7 59 aa8.12□□□□□ -1.11
LIG3-212ENST00000590181 MSGN1A6NI15 193 aa8.12□□□□□ -1.11
LIG3-212ENST00000590181 SRRM4A7MD48 611 aaKnown RBP8.12□□□□□ -1.11
LIG3-212ENST00000590181 LINC00473A8K010 186 aa8.12□□□□□ -1.11
LIG3-212ENST00000590181 CYB5BO43169 146 aa8.12□□□□□ -1.11
LIG3-212ENST00000590181 SOX15O60248 233 aa8.12□□□□□ -1.11
LIG3-212ENST00000590181 FCGR3BO75015 233 aa8.12□□□□□ -1.11
LIG3-212ENST00000590181 PPYP01298 95 aa8.12□□□□□ -1.11
LIG3-212ENST00000590181 NFYAP23511 347 aaPredicted RBP8.12□□□□□ -1.11
LIG3-212ENST00000590181 FCGR2CP31995 323 aa8.12□□□□□ -1.11
LIG3-212ENST00000590181 TAS2R31P59538 309 aa8.12□□□□□ -1.11
LIG3-212ENST00000590181 NDPQ00604 133 aa8.12□□□□□ -1.11
LIG3-212ENST00000590181 THOC7Q6I9Y2 204 aaKnown RBP8.12□□□□□ -1.11
LIG3-212ENST00000590181 HSD17B13Q7Z5P4 300 aaPredicted RBP8.12□□□□□ -1.11
LIG3-212ENST00000590181 CMTM1Q8IZ96 169 aa8.12□□□□□ -1.11
LIG3-212ENST00000590181 TTC9CQ8N5M4 171 aa8.12□□□□□ -1.11
LIG3-212ENST00000590181 SAMD12Q8N8I0 201 aa8.12□□□□□ -1.11
LIG3-212ENST00000590181 OR6Q1Q8NGQ2 317 aa8.12□□□□□ -1.11
LIG3-212ENST00000590181 OR13F1Q8NGS4 319 aa8.12□□□□□ -1.11
LIG3-212ENST00000590181 OR5H6Q8NGV6 325 aa8.12□□□□□ -1.11
LIG3-212ENST00000590181 GRPEL2Q8TAA5 225 aa8.12□□□□□ -1.11
LIG3-212ENST00000590181 SNAPC3Q92966 411 aa8.12□□□□□ -1.11
LIG3-212ENST00000590181 PHB2Q99623 299 aa8.12□□□□□ -1.11
LIG3-212ENST00000590181 FUNDC2Q9BWH2 189 aa8.12□□□□□ -1.11
LIG3-212ENST00000590181 GNB4Q9HAV0 340 aa8.12□□□□□ -1.11
LIG3-212ENST00000590181 TPSG1Q9NRR2 321 aa8.12□□□□□ -1.11
LIG3-212ENST00000590181 ZNF355PQ9NSJ1 428 aa8.12□□□□□ -1.11
LIG3-212ENST00000590181 ADAM30Q9UKF2 790 aa8.12□□□□□ -1.11
LIG3-212ENST00000590181 ELF5Q9UKW6 265 aaPredicted RBP8.12□□□□□ -1.11
LIG3-212ENST00000590181 ZNF257Q9Y2Q1 563 aa8.12□□□□□ -1.11
LIG3-212ENST00000590181 FBXO7Q9Y3I1 522 aa8.12□□□□□ -1.11
LIG3-212ENST00000590181 U3KQK5 164 aa8.12□□□□□ -1.11
LIG3-212ENST00000590181 DNAH1Q9P2D7 4330 aa8.12□□□□□ -1.11
LIG3-212ENST00000590181 TENM2Q9NT68 2774 aa8.11□□□□□ -1.11
LIG3-212ENST00000590181 KBTBD11O94819 623 aa8.11□□□□□ -1.11
LIG3-212ENST00000590181 HPRT1P00492 218 aa8.11□□□□□ -1.11
LIG3-212ENST00000590181 IGLV2-14P01704 120 aa8.11□□□□□ -1.11
LIG3-212ENST00000590181 CLEC2LP0C7M8 214 aa8.11□□□□□ -1.11
LIG3-212ENST00000590181 HIST1H1BP16401 226 aaKnown RBP8.11□□□□□ -1.11
LIG3-212ENST00000590181 HERV-K104P61576 105 aa8.11□□□□□ -1.11
LIG3-212ENST00000590181 EIF4EBP1Q13541 118 aaPredicted RBP8.11□□□□□ -1.11
LIG3-212ENST00000590181 DYRK1AQ13627 763 aa8.11□□□□□ -1.11
LIG3-212ENST00000590181 POU2AF1Q16633 256 aa8.11□□□□□ -1.11
LIG3-212ENST00000590181 KLK9Q2XQG4 91 aa8.11□□□□□ -1.11
LIG3-212ENST00000590181 DEFB136Q30KP8 78 aa8.11□□□□□ -1.11
LIG3-212ENST00000590181 ZNF343Q6P1L6 599 aa8.11□□□□□ -1.11
LIG3-212ENST00000590181 ACSM6Q6P461 480 aa8.11□□□□□ -1.11
LIG3-212ENST00000590181 ANKRD13BQ86YJ7 626 aa8.11□□□□□ -1.11
LIG3-212ENST00000590181 NECAP1Q8NC96 275 aa8.11□□□□□ -1.11
LIG3-212ENST00000590181 OR6F1Q8NGZ6 308 aa8.11□□□□□ -1.11
LIG3-212ENST00000590181 TMEM167AQ8TBQ9 72 aa8.11□□□□□ -1.11
LIG3-212ENST00000590181 TCTEX1D2Q8WW35 142 aa8.11□□□□□ -1.11
LIG3-212ENST00000590181 SRSF12Q8WXF0 261 aaKnown RBP8.11□□□□□ -1.11
LIG3-212ENST00000590181 OR4C12Q96R67 309 aa8.11□□□□□ -1.11
LIG3-212ENST00000590181 BCL7BQ9BQE9 202 aa8.11□□□□□ -1.11
LIG3-212ENST00000590181 RNF167Q9H6Y7 350 aa8.11□□□□□ -1.11
LIG3-212ENST00000590181 PLEKHA2Q9HB19 425 aa8.11□□□□□ -1.11
LIG3-212ENST00000590181 BET1LQ9NYM9 111 aa8.11□□□□□ -1.11
LIG3-212ENST00000590181 SIGLEC8Q9NYZ4 499 aa8.11□□□□□ -1.11
LIG3-212ENST00000590181 SCOCQ9UIL1 159 aa8.11□□□□□ -1.11
LIG3-212ENST00000590181 KLK9Q9UKQ9 250 aa8.11□□□□□ -1.11
LIG3-212ENST00000590181 ANAPC10Q9UM13 185 aa8.11□□□□□ -1.11
LIG3-212ENST00000590181 ZNF256Q9Y2P7 627 aaPredicted RBP8.11□□□□□ -1.11
LIG3-212ENST00000590181 A3GALT2U3KPV4 340 aa8.11□□□□□ -1.11
LIG3-212ENST00000590181 TRBV9A0A0B4J1U6 114 aa8.1□□□□□ -1.11
LIG3-212ENST00000590181 NPIPB5A8MRT5 1133 aa8.1□□□□□ -1.11
LIG3-212ENST00000590181 MPPED1O15442 326 aa8.1□□□□□ -1.11
LIG3-212ENST00000590181 NQO2P16083 231 aa8.1□□□□□ -1.11
LIG3-212ENST00000590181 TBPP20226 339 aa8.1□□□□□ -1.11
LIG3-212ENST00000590181 LINC00205P59089 165 aa8.1□□□□□ -1.11
LIG3-212ENST00000590181 GNB1P62873 340 aa8.1□□□□□ -1.11
LIG3-212ENST00000590181 TNXAQ16473 311 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms