RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 NOTOA8MTQ0 251 aa11.34□□□□□ -0.59
CLN3-236ENST00000568558 MFNGO00587 321 aa11.34□□□□□ -0.59
CLN3-236ENST00000568558 OR2A4O95047 310 aa11.34□□□□□ -0.59
CLN3-236ENST00000568558 OR9G9P0C7N8 305 aa11.34□□□□□ -0.59
CLN3-236ENST00000568558 SMIM18P0DKX4 95 aa11.34□□□□□ -0.59
CLN3-236ENST00000568558 DUTP33316 252 aaKnown RBP11.34□□□□□ -0.59
CLN3-236ENST00000568558 UBE2KP61086 200 aa11.34□□□□□ -0.59
CLN3-236ENST00000568558 MXD1Q05195 221 aa11.34□□□□□ -0.59
CLN3-236ENST00000568558 TNXAQ16473 311 aa11.34□□□□□ -0.59
CLN3-236ENST00000568558 PRSS8Q16651 343 aa11.34□□□□□ -0.59
CLN3-236ENST00000568558 VMA21Q3ZAQ7 101 aa11.34□□□□□ -0.59
CLN3-236ENST00000568558 TEX45Q8NA69 505 aa11.34□□□□□ -0.59
CLN3-236ENST00000568558 OR10R2Q8NGX6 335 aa11.34□□□□□ -0.59
CLN3-236ENST00000568558 SRSF12Q8WXF0 261 aaKnown RBP11.34□□□□□ -0.59
CLN3-236ENST00000568558 ZNF230Q9UIE0 474 aaPredicted RBP11.34□□□□□ -0.59
CLN3-236ENST00000568558 RBM7Q9Y580 266 aaKnown RBP11.34□□□□□ -0.59
CLN3-236ENST00000568558 LINC00473A8K010 186 aa11.33□□□□□ -0.6
CLN3-236ENST00000568558 RAB27BO00194 218 aa11.33□□□□□ -0.6
CLN3-236ENST00000568558 CRYZL1O95825 349 aa11.33□□□□□ -0.6
CLN3-236ENST00000568558 GNB3P16520 340 aa11.33□□□□□ -0.6
CLN3-236ENST00000568558 MECP2P51608 486 aaKnown RBP11.33□□□□□ -0.6
CLN3-236ENST00000568558 IDO2Q6ZQW0 420 aa11.33□□□□□ -0.6
CLN3-236ENST00000568558 SNAPC3Q92966 411 aa11.33□□□□□ -0.6
CLN3-236ENST00000568558 ADTRPQ96IZ2 230 aa11.33□□□□□ -0.6
CLN3-236ENST00000568558 GINS4Q9BRT9 223 aa11.33□□□□□ -0.6
CLN3-236ENST00000568558 TUBA4BQ9H853 241 aa11.33□□□□□ -0.6
CLN3-236ENST00000568558 PEMTQ9UBM1 199 aa11.33□□□□□ -0.6
CLN3-236ENST00000568558 DAPK2Q9UIK4 370 aa11.33□□□□□ -0.6
CLN3-236ENST00000568558 ALMS1Q8TCU4 4167 aa11.33□□□□□ -0.6
CLN3-236ENST00000568558 A0A075B6Q4 140 aa11.32□□□□□ -0.6
CLN3-236ENST00000568558 IFNA6P05013 189 aa11.32□□□□□ -0.6
CLN3-236ENST00000568558 HIST1H1DP16402 221 aaKnown RBP11.32□□□□□ -0.6
CLN3-236ENST00000568558 RAB6AP20340 208 aa11.32□□□□□ -0.6
CLN3-236ENST00000568558 SFXN4Q6P4A7 337 aa11.32□□□□□ -0.6
CLN3-236ENST00000568558 ADAMTSL5Q6ZMM2 481 aa11.32□□□□□ -0.6
CLN3-236ENST00000568558 Q6ZS49 121 aa11.32□□□□□ -0.6
CLN3-236ENST00000568558 TPRA1Q86W33 373 aa11.32□□□□□ -0.6
CLN3-236ENST00000568558 H1FOOQ8IZA3 346 aaPredicted RBP11.32□□□□□ -0.6
CLN3-236ENST00000568558 OR2K2Q8NGT1 345 aa11.32□□□□□ -0.6
CLN3-236ENST00000568558 OSR1Q8TAX0 266 aaPredicted RBP11.32□□□□□ -0.6
CLN3-236ENST00000568558 LGALS14Q8TCE9 139 aa11.32□□□□□ -0.6
CLN3-236ENST00000568558 ACOT12Q8WYK0 555 aa11.32□□□□□ -0.6
CLN3-236ENST00000568558 AKIP1Q9NQ31 210 aa11.32□□□□□ -0.6
CLN3-236ENST00000568558 IGKV1D-8A0A087WSZ0 117 aa11.31□□□□□ -0.6
CLN3-236ENST00000568558 TRBV9A0A0B4J1U6 114 aa11.31□□□□□ -0.6
CLN3-236ENST00000568558 FAM223BA6NKX1 122 aa11.31□□□□□ -0.6
CLN3-236ENST00000568558 BMPR1BO00238 502 aa11.31□□□□□ -0.6
CLN3-236ENST00000568558 MPPED1O15442 326 aa11.31□□□□□ -0.6
CLN3-236ENST00000568558 PRH1P02810 166 aa11.31□□□□□ -0.6
CLN3-236ENST00000568558 LSM3P62310 102 aaKnown RBP11.31□□□□□ -0.6
CLN3-236ENST00000568558 RHOGP84095 191 aa11.31□□□□□ -0.6
CLN3-236ENST00000568558 ZNF45Q02386 682 aa11.31□□□□□ -0.6
CLN3-236ENST00000568558 EXOSC2Q13868 293 aaKnown RBP11.31□□□□□ -0.6
CLN3-236ENST00000568558 FAM223AQ8IWN6 122 aa11.31□□□□□ -0.6
CLN3-236ENST00000568558 ZNF430Q9H8G1 570 aaPredicted RBP11.31□□□□□ -0.6
CLN3-236ENST00000568558 VCX3AQ9NNX9 186 aa11.31□□□□□ -0.6
CLN3-236ENST00000568558 ELF5Q9UKW6 265 aaPredicted RBP11.31□□□□□ -0.6
CLN3-236ENST00000568558 AIREO43918 545 aa11.3□□□□□ -0.6
CLN3-236ENST00000568558 SAA1P0DJI8 122 aaPredicted RBP11.3□□□□□ -0.6
CLN3-236ENST00000568558 TALDO1P37837 337 aa11.3□□□□□ -0.6
CLN3-236ENST00000568558 ARFRP1Q13795 201 aa11.3□□□□□ -0.6
CLN3-236ENST00000568558 CDK10Q15131 360 aa11.3□□□□□ -0.6
CLN3-236ENST00000568558 LINC00322Q6ZN03 302 aaPredicted RBP11.3□□□□□ -0.6
CLN3-236ENST00000568558 LAX1Q8IWV1 398 aa11.3□□□□□ -0.6
CLN3-236ENST00000568558 OR5H6Q8NGV6 325 aa11.3□□□□□ -0.6
CLN3-236ENST00000568558 ATG5Q9H1Y0 275 aa11.3□□□□□ -0.6
CLN3-236ENST00000568558 PLEKHA3Q9HB20 300 aa11.3□□□□□ -0.6
CLN3-236ENST00000568558 CEPT1Q9Y6K0 416 aa11.3□□□□□ -0.6
CLN3-236ENST00000568558 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.29□□□□□ -0.6
CLN3-236ENST00000568558 CREBL2O60519 120 aaPredicted RBP11.29□□□□□ -0.6
CLN3-236ENST00000568558 CD81P60033 236 aa11.29□□□□□ -0.6
CLN3-236ENST00000568558 ATP5G2Q06055 141 aa11.29□□□□□ -0.6
CLN3-236ENST00000568558 CD300EQ496F6 205 aaPredicted RBP11.29□□□□□ -0.6
CLN3-236ENST00000568558 C10orf55Q5SWW7 151 aa11.29□□□□□ -0.6
CLN3-236ENST00000568558 IDNKQ5T6J7 187 aa11.29□□□□□ -0.6
CLN3-236ENST00000568558 MMD2Q8IY49 270 aa11.29□□□□□ -0.6
CLN3-236ENST00000568558 TTC9CQ8N5M4 171 aa11.29□□□□□ -0.6
CLN3-236ENST00000568558 SPIN2AQ99865 258 aa11.29□□□□□ -0.6
CLN3-236ENST00000568558 SPIN2BQ9BPZ2 258 aa11.29□□□□□ -0.6
CLN3-236ENST00000568558 NEURL2Q9BR09 285 aa11.29□□□□□ -0.6
CLN3-236ENST00000568558 HIPK2Q9H2X6 1198 aa11.29□□□□□ -0.6
CLN3-236ENST00000568558 RETNQ9HD89 108 aa11.29□□□□□ -0.6
CLN3-236ENST00000568558 METTL21EPA6NDL7 271 aa11.28□□□□□ -0.6
CLN3-236ENST00000568558 FCGR3BO75015 233 aa11.28□□□□□ -0.6
CLN3-236ENST00000568558 TUSC2O75896 110 aa11.28□□□□□ -0.6
CLN3-236ENST00000568558 ACTL6BO94805 426 aa11.28□□□□□ -0.6
CLN3-236ENST00000568558 TPPPO94811 219 aa11.28□□□□□ -0.6
CLN3-236ENST00000568558 DTYMKP23919 212 aa11.28□□□□□ -0.6
CLN3-236ENST00000568558 TIMM50Q3ZCQ8 353 aa11.28□□□□□ -0.6
CLN3-236ENST00000568558 KCTD9Q7L273 389 aa11.28□□□□□ -0.6
CLN3-236ENST00000568558 ZNF645Q8N7E2 425 aa11.28□□□□□ -0.6
CLN3-236ENST00000568558 NECAP1Q8NC96 275 aa11.28□□□□□ -0.6
CLN3-236ENST00000568558 OR13F1Q8NGS4 319 aa11.28□□□□□ -0.6
CLN3-236ENST00000568558 SLC25A38Q96DW6 304 aa11.28□□□□□ -0.6
CLN3-236ENST00000568558 FUNDC2Q9BWH2 189 aa11.28□□□□□ -0.6
CLN3-236ENST00000568558 ZNF785A8K8V0 405 aa11.27□□□□□ -0.61
CLN3-236ENST00000568558 J3QRK9 145 aa11.27□□□□□ -0.61
CLN3-236ENST00000568558 OR2J3O76001 311 aa11.27□□□□□ -0.61
CLN3-236ENST00000568558 CD7P09564 240 aa11.27□□□□□ -0.61
CLN3-236ENST00000568558 RPS19P39019 145 aaKnown RBP11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms