RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 MFSD4AQ8N468 514 aa10.84□□□□□ -0.67
CLN3-235ENST00000568497 ZNF436-AS1Q8NC38 126 aaPredicted RBP10.84□□□□□ -0.67
CLN3-235ENST00000568497 CMTM3Q96MX0 182 aa10.84□□□□□ -0.67
CLN3-235ENST00000568497 OR5B12Q96R08 314 aa10.84□□□□□ -0.67
CLN3-235ENST00000568497 OR51J1Q9H342 316 aa10.84□□□□□ -0.67
CLN3-235ENST00000568497 STAB2Q8WWQ8 2551 aa10.84□□□□□ -0.67
CLN3-235ENST00000568497 SOX15O60248 233 aa10.83□□□□□ -0.68
CLN3-235ENST00000568497 DIRAS3O95661 229 aa10.83□□□□□ -0.68
CLN3-235ENST00000568497 CRYGBP07316 175 aa10.83□□□□□ -0.68
CLN3-235ENST00000568497 LYL1P12980 280 aa10.83□□□□□ -0.68
CLN3-235ENST00000568497 GNRHRP30968 328 aa10.83□□□□□ -0.68
CLN3-235ENST00000568497 MC5RP33032 325 aa10.83□□□□□ -0.68
CLN3-235ENST00000568497 PDPNQ86YL7 162 aa10.83□□□□□ -0.68
CLN3-235ENST00000568497 FOXRED2Q8IWF2 684 aa10.83□□□□□ -0.68
CLN3-235ENST00000568497 ASCL2Q99929 193 aa10.83□□□□□ -0.68
CLN3-235ENST00000568497 GPR61Q9BZJ8 451 aa10.83□□□□□ -0.68
CLN3-235ENST00000568497 AP4M1O00189 453 aa10.82□□□□□ -0.68
CLN3-235ENST00000568497 HLA-DRB1P01911 266 aa10.82□□□□□ -0.68
CLN3-235ENST00000568497 SAA1P0DJI8 122 aaPredicted RBP10.82□□□□□ -0.68
CLN3-235ENST00000568497 RCVRNP35243 200 aa10.82□□□□□ -0.68
CLN3-235ENST00000568497 CFHR3Q02985 330 aa10.82□□□□□ -0.68
CLN3-235ENST00000568497 RTL8BQ17RB0 113 aa10.82□□□□□ -0.68
CLN3-235ENST00000568497 C8orf86Q6ZUL3 223 aa10.82□□□□□ -0.68
CLN3-235ENST00000568497 OR8H1Q8NGG4 311 aa10.82□□□□□ -0.68
CLN3-235ENST00000568497 GIMAP1Q8WWP7 306 aa10.82□□□□□ -0.68
CLN3-235ENST00000568497 MS4A10Q96PG2 267 aa10.82□□□□□ -0.68
CLN3-235ENST00000568497 BCL7BQ9BQE9 202 aa10.82□□□□□ -0.68
CLN3-235ENST00000568497 NXF2Q9GZY0 626 aaKnown RBP10.82□□□□□ -0.68
CLN3-235ENST00000568497 SCPEP1Q9HB40 452 aa10.82□□□□□ -0.68
CLN3-235ENST00000568497 TRAV3A0A0B4J244 114 aa10.81□□□□□ -0.68
CLN3-235ENST00000568497 A0A1W2PN81 502 aa10.81□□□□□ -0.68
CLN3-235ENST00000568497 RLN1P04808 185 aa10.81□□□□□ -0.68
CLN3-235ENST00000568497 VDAC1P21796 283 aa10.81□□□□□ -0.68
CLN3-235ENST00000568497 CHRNA7P36544 502 aa10.81□□□□□ -0.68
CLN3-235ENST00000568497 PPP5CP53041 499 aa10.81□□□□□ -0.68
CLN3-235ENST00000568497 TAS2R46P59540 309 aa10.81□□□□□ -0.68
CLN3-235ENST00000568497 TSPAN5P62079 268 aa10.81□□□□□ -0.68
CLN3-235ENST00000568497 TMEM177Q53S58 311 aa10.81□□□□□ -0.68
CLN3-235ENST00000568497 LFNGQ8NES3 379 aa10.81□□□□□ -0.68
CLN3-235ENST00000568497 OR5T1Q8NG75 326 aa10.81□□□□□ -0.68
CLN3-235ENST00000568497 OR4X2Q8NGF9 303 aa10.81□□□□□ -0.68
CLN3-235ENST00000568497 FCAMRQ8WWV6 532 aa10.81□□□□□ -0.68
CLN3-235ENST00000568497 MOB3AQ96BX8 217 aa10.81□□□□□ -0.68
CLN3-235ENST00000568497 TSNAXQ99598 290 aaKnown RBP10.81□□□□□ -0.68
CLN3-235ENST00000568497 ALX4Q9H161 411 aaPredicted RBP10.81□□□□□ -0.68
CLN3-235ENST00000568497 MTFP1Q9UDX5 166 aa10.81□□□□□ -0.68
CLN3-235ENST00000568497 ADAM30Q9UKF2 790 aa10.81□□□□□ -0.68
CLN3-235ENST00000568497 TRAV41A0A0B4J266 112 aa10.8□□□□□ -0.68
CLN3-235ENST00000568497 NUDT19A8MXV4 375 aa10.8□□□□□ -0.68
CLN3-235ENST00000568497 RBBP9O75884 186 aa10.8□□□□□ -0.68
CLN3-235ENST00000568497 S1PR2O95136 353 aa10.8□□□□□ -0.68
CLN3-235ENST00000568497 FXYD3Q14802 87 aa10.8□□□□□ -0.68
CLN3-235ENST00000568497 AADACL3Q5VUY0 350 aa10.8□□□□□ -0.68
CLN3-235ENST00000568497 DHRS11Q6UWP2 260 aa10.8□□□□□ -0.68
CLN3-235ENST00000568497 PPP1R27Q86WC6 154 aa10.8□□□□□ -0.68
CLN3-235ENST00000568497 SPAG16Q8N0X2 631 aa10.8□□□□□ -0.68
CLN3-235ENST00000568497 KLHL30-AS1Q8NEE0 82 aa10.8□□□□□ -0.68
CLN3-235ENST00000568497 OR6F1Q8NGZ6 308 aa10.8□□□□□ -0.68
CLN3-235ENST00000568497 CHPT1Q8WUD6 406 aa10.8□□□□□ -0.68
CLN3-235ENST00000568497 GHITMQ9H3K2 345 aa10.8□□□□□ -0.68
CLN3-235ENST00000568497 GNB4Q9HAV0 340 aa10.8□□□□□ -0.68
CLN3-235ENST00000568497 DNAH7Q8WXX0 4024 aa10.8□□□□□ -0.68
CLN3-235ENST00000568497 FABP12A6NFH5 140 aa10.79□□□□□ -0.68
CLN3-235ENST00000568497 E7EUB6 86 aa10.79□□□□□ -0.68
CLN3-235ENST00000568497 PGLYRP1O75594 196 aaPredicted RBP10.79□□□□□ -0.68
CLN3-235ENST00000568497 CNIH1O95406 144 aa10.79□□□□□ -0.68
CLN3-235ENST00000568497 PRH1P02810 166 aa10.79□□□□□ -0.68
CLN3-235ENST00000568497 ZNF735P0CB33 412 aa10.79□□□□□ -0.68
CLN3-235ENST00000568497 PGAM2P15259 253 aa10.79□□□□□ -0.68
CLN3-235ENST00000568497 RPL23AP62750 156 aaKnown RBP10.79□□□□□ -0.68
CLN3-235ENST00000568497 TNXAQ16473 311 aa10.79□□□□□ -0.68
CLN3-235ENST00000568497 SCGB2B2Q4G0G5 96 aa10.79□□□□□ -0.68
CLN3-235ENST00000568497 ASPHD1Q5U4P2 390 aa10.79□□□□□ -0.68
CLN3-235ENST00000568497 UNQ5815/PRO19632Q6UWF5 114 aa10.79□□□□□ -0.68
CLN3-235ENST00000568497 ETV3LQ6ZN32 361 aa10.79□□□□□ -0.68
CLN3-235ENST00000568497 ARPC1AQ92747 370 aa10.79□□□□□ -0.68
CLN3-235ENST00000568497 MRGPRFQ96AM1 343 aa10.79□□□□□ -0.68
CLN3-235ENST00000568497 ADTRPQ96IZ2 230 aa10.79□□□□□ -0.68
CLN3-235ENST00000568497 LYSTQ99698 3801 aa10.79□□□□□ -0.68
CLN3-235ENST00000568497 SOSTQ9BQB4 213 aa10.79□□□□□ -0.68
CLN3-235ENST00000568497 ZNF430Q9H8G1 570 aaPredicted RBP10.79□□□□□ -0.68
CLN3-235ENST00000568497 TSSC4Q9Y5U2 329 aaPredicted RBP10.79□□□□□ -0.68
CLN3-235ENST00000568497 V9GYH0 126 aa10.79□□□□□ -0.68
CLN3-235ENST00000568497 A0A1B0GW64 132 aa10.78□□□□□ -0.68
CLN3-235ENST00000568497 HMX3A6NHT5 357 aa10.78□□□□□ -0.68
CLN3-235ENST00000568497 GABARAPH6UMI1 98 aa10.78□□□□□ -0.68
CLN3-235ENST00000568497 RBMXL2O75526 392 aaKnown RBP10.78□□□□□ -0.68
CLN3-235ENST00000568497 RAB3DO95716 219 aa10.78□□□□□ -0.68
CLN3-235ENST00000568497 IGHV3-11P01762 117 aa10.78□□□□□ -0.68
CLN3-235ENST00000568497 PPIFP30405 207 aaKnown RBP10.78□□□□□ -0.68
CLN3-235ENST00000568497 KIAA0141Q14154 515 aaPredicted RBP10.78□□□□□ -0.68
CLN3-235ENST00000568497 ZNF79Q15937 498 aa10.78□□□□□ -0.68
CLN3-235ENST00000568497 PRSS8Q16651 343 aa10.78□□□□□ -0.68
CLN3-235ENST00000568497 IZUMO4Q1ZYL8 232 aa10.78□□□□□ -0.68
CLN3-235ENST00000568497 PYDC2Q56P42 97 aa10.78□□□□□ -0.68
CLN3-235ENST00000568497 C19orf54Q5BKX5 351 aa10.78□□□□□ -0.68
CLN3-235ENST00000568497 RNASE10Q5GAN6 216 aaKnown RBP10.78□□□□□ -0.68
CLN3-235ENST00000568497 ZFAND6Q6FIF0 208 aa10.78□□□□□ -0.68
CLN3-235ENST00000568497 PYHIN1Q6K0P9 492 aa10.78□□□□□ -0.68
CLN3-235ENST00000568497 OR4C16Q8NGL9 310 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms