RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 BEST4Q8NFU0 473 aa11.39□□□□□ -0.59
CLN3-213ENST00000565047 SRSF12Q8WXF0 261 aaKnown RBP11.39□□□□□ -0.59
CLN3-213ENST00000565047 SNAPC3Q92966 411 aa11.39□□□□□ -0.59
CLN3-213ENST00000565047 A0A0G2JLM5 398 aa11.38□□□□□ -0.59
CLN3-213ENST00000565047 A0A1B0GW64 132 aa11.38□□□□□ -0.59
CLN3-213ENST00000565047 E7EUB6 86 aa11.38□□□□□ -0.59
CLN3-213ENST00000565047 FCGR3BO75015 233 aa11.38□□□□□ -0.59
CLN3-213ENST00000565047 SAP30O75446 220 aa11.38□□□□□ -0.59
CLN3-213ENST00000565047 TRBV12-3P01733 135 aa11.38□□□□□ -0.59
CLN3-213ENST00000565047 RPS19P39019 145 aaKnown RBP11.38□□□□□ -0.59
CLN3-213ENST00000565047 ZNF45Q02386 682 aa11.38□□□□□ -0.59
CLN3-213ENST00000565047 MSMO1Q15800 293 aa11.38□□□□□ -0.59
CLN3-213ENST00000565047 KCTD9Q7L273 389 aa11.38□□□□□ -0.59
CLN3-213ENST00000565047 PUSL1Q8N0Z8 303 aaKnown RBP11.38□□□□□ -0.59
CLN3-213ENST00000565047 MFSD4AQ8N468 514 aa11.38□□□□□ -0.59
CLN3-213ENST00000565047 GPHA2Q96T91 129 aa11.38□□□□□ -0.59
CLN3-213ENST00000565047 HSD17B10Q99714 261 aaKnown RBP11.38□□□□□ -0.59
CLN3-213ENST00000565047 RANGRFQ9HD47 186 aaPredicted RBP11.38□□□□□ -0.59
CLN3-213ENST00000565047 ANAPC10Q9UM13 185 aa11.38□□□□□ -0.59
CLN3-213ENST00000565047 TENM3Q9P273 2699 aa11.38□□□□□ -0.59
CLN3-213ENST00000565047 TEX22C9J3V5 150 aa11.37□□□□□ -0.59
CLN3-213ENST00000565047 XRCC3O43542 346 aa11.37□□□□□ -0.59
CLN3-213ENST00000565047 IGLV1-51P01701 117 aa11.37□□□□□ -0.59
CLN3-213ENST00000565047 APELAP0DMC3 54 aa11.37□□□□□ -0.59
CLN3-213ENST00000565047 TNXAQ16473 311 aa11.37□□□□□ -0.59
CLN3-213ENST00000565047 KLK9Q2XQG4 91 aa11.37□□□□□ -0.59
CLN3-213ENST00000565047 VKORC1L1Q8N0U8 176 aa11.37□□□□□ -0.59
CLN3-213ENST00000565047 TTC9CQ8N5M4 171 aa11.37□□□□□ -0.59
CLN3-213ENST00000565047 USMG5Q96IX5 58 aa11.37□□□□□ -0.59
CLN3-213ENST00000565047 ZNF355PQ9NSJ1 428 aa11.37□□□□□ -0.59
CLN3-213ENST00000565047 KLK9Q9UKQ9 250 aa11.37□□□□□ -0.59
CLN3-213ENST00000565047 DMRT1Q9Y5R6 373 aa11.37□□□□□ -0.59
CLN3-213ENST00000565047 SORL1Q92673 2214 aa11.37□□□□□ -0.59
CLN3-213ENST00000565047 C13orf42A0A1B0GVH6 325 aa11.36□□□□□ -0.59
CLN3-213ENST00000565047 ANKRD34BA5PLL1 514 aa11.36□□□□□ -0.59
CLN3-213ENST00000565047 OR9G9P0C7N8 305 aa11.36□□□□□ -0.59
CLN3-213ENST00000565047 GP9P14770 177 aa11.36□□□□□ -0.59
CLN3-213ENST00000565047 FCGR2CP31995 323 aa11.36□□□□□ -0.59
CLN3-213ENST00000565047 OR2B11Q5JQS5 317 aa11.36□□□□□ -0.59
CLN3-213ENST00000565047 C10orf55Q5SWW7 151 aa11.36□□□□□ -0.59
CLN3-213ENST00000565047 ZNF66Q6ZN08 573 aa11.36□□□□□ -0.59
CLN3-213ENST00000565047 MMD2Q8IY49 270 aa11.36□□□□□ -0.59
CLN3-213ENST00000565047 Q8N1Y9 231 aa11.36□□□□□ -0.59
CLN3-213ENST00000565047 TSPAN14Q8NG11 270 aa11.36□□□□□ -0.59
CLN3-213ENST00000565047 TMEM167AQ8TBQ9 72 aa11.36□□□□□ -0.59
CLN3-213ENST00000565047 GIMAP1Q8WWP7 306 aa11.36□□□□□ -0.59
CLN3-213ENST00000565047 CCL28Q9NRJ3 127 aa11.36□□□□□ -0.59
CLN3-213ENST00000565047 ADAM30Q9UKF2 790 aa11.36□□□□□ -0.59
CLN3-213ENST00000565047 PRELID3BQ9Y3B1 194 aa11.36□□□□□ -0.59
CLN3-213ENST00000565047 SMAD5-AS1Q9Y6J3 95 aa11.36□□□□□ -0.59
CLN3-213ENST00000565047 A0A087WXM4 84 aa11.35□□□□□ -0.59
CLN3-213ENST00000565047 AIREO43918 545 aa11.35□□□□□ -0.59
CLN3-213ENST00000565047 OR2A4O95047 310 aa11.35□□□□□ -0.59
CLN3-213ENST00000565047 PPYP01298 95 aa11.35□□□□□ -0.59
CLN3-213ENST00000565047 PRH1P02810 166 aa11.35□□□□□ -0.59
CLN3-213ENST00000565047 IL6RP08887 468 aaPredicted RBP11.35□□□□□ -0.59
CLN3-213ENST00000565047 ZP3P21754 424 aa11.35□□□□□ -0.59
CLN3-213ENST00000565047 MECP2P51608 486 aaKnown RBP11.35□□□□□ -0.59
CLN3-213ENST00000565047 TIMM50Q3ZCQ8 353 aa11.35□□□□□ -0.59
CLN3-213ENST00000565047 HAPLN4Q86UW8 402 aa11.35□□□□□ -0.59
CLN3-213ENST00000565047 OR6Q1Q8NGQ2 317 aa11.35□□□□□ -0.59
CLN3-213ENST00000565047 WWC2-AS2Q96NR7 200 aa11.35□□□□□ -0.59
CLN3-213ENST00000565047 OR2A7Q96R45 310 aa11.35□□□□□ -0.59
CLN3-213ENST00000565047 AKIP1Q9NQ31 210 aa11.35□□□□□ -0.59
CLN3-213ENST00000565047 DIABLOQ9NR28 239 aa11.35□□□□□ -0.59
CLN3-213ENST00000565047 COA4Q9NYJ1 87 aa11.35□□□□□ -0.59
CLN3-213ENST00000565047 PEF1Q9UBV8 284 aaKnown RBP11.35□□□□□ -0.59
CLN3-213ENST00000565047 MRPS7Q9Y2R9 242 aaKnown RBP11.35□□□□□ -0.59
CLN3-213ENST00000565047 CGB1A6NKQ9 187 aa11.34□□□□□ -0.59
CLN3-213ENST00000565047 KBTBD11O94819 623 aa11.34□□□□□ -0.59
CLN3-213ENST00000565047 ZNF735P0CB33 412 aa11.34□□□□□ -0.59
CLN3-213ENST00000565047 NAT1P18440 290 aa11.34□□□□□ -0.59
CLN3-213ENST00000565047 ARPC4P59998 168 aa11.34□□□□□ -0.59
CLN3-213ENST00000565047 DHRS11Q6UWP2 260 aa11.34□□□□□ -0.59
CLN3-213ENST00000565047 CROCCP3Q8IVE0 287 aa11.34□□□□□ -0.59
CLN3-213ENST00000565047 SBSPONQ8IVN8 264 aa11.34□□□□□ -0.59
CLN3-213ENST00000565047 ZBTB34Q8NCN2 500 aa11.34□□□□□ -0.59
CLN3-213ENST00000565047 OR5AP2Q8NGF4 316 aa11.34□□□□□ -0.59
CLN3-213ENST00000565047 OR9G4Q8NGQ1 327 aa11.34□□□□□ -0.59
CLN3-213ENST00000565047 OR13F1Q8NGS4 319 aa11.34□□□□□ -0.59
CLN3-213ENST00000565047 OR4S2Q8NH73 311 aa11.34□□□□□ -0.59
CLN3-213ENST00000565047 TCTEX1D2Q8WW35 142 aa11.34□□□□□ -0.59
CLN3-213ENST00000565047 ACOT12Q8WYK0 555 aa11.34□□□□□ -0.59
CLN3-213ENST00000565047 ASCL2Q99929 193 aa11.34□□□□□ -0.59
CLN3-213ENST00000565047 THAP7Q9BT49 309 aaPredicted RBP11.34□□□□□ -0.59
CLN3-213ENST00000565047 DCUN1D5Q9BTE7 237 aa11.34□□□□□ -0.59
CLN3-213ENST00000565047 TAS2R8Q9NYW2 309 aa11.34□□□□□ -0.59
CLN3-213ENST00000565047 SIGLEC8Q9NYZ4 499 aa11.34□□□□□ -0.59
CLN3-213ENST00000565047 DYNC2H1Q8NCM8 4307 aaKnown RBP11.33□□□□□ -0.6
CLN3-213ENST00000565047 HMX3A6NHT5 357 aa11.33□□□□□ -0.6
CLN3-213ENST00000565047 RBFOX2O43251 390 aaKnown RBP eCLIP11.33□□□□□ -0.6
CLN3-213ENST00000565047 TNFSF12O43508 249 aa11.33□□□□□ -0.6
CLN3-213ENST00000565047 TNFAIP8O95379 198 aa11.33□□□□□ -0.6
CLN3-213ENST00000565047 LY86O95711 162 aa11.33□□□□□ -0.6
CLN3-213ENST00000565047 FCER2P06734 321 aa11.33□□□□□ -0.6
CLN3-213ENST00000565047 CRYGCP07315 174 aa11.33□□□□□ -0.6
CLN3-213ENST00000565047 CSN3P07498 182 aa11.33□□□□□ -0.6
CLN3-213ENST00000565047 CBX5P45973 191 aa11.33□□□□□ -0.6
CLN3-213ENST00000565047 SYNJ2BPP57105 145 aa11.33□□□□□ -0.6
CLN3-213ENST00000565047 LSM3P62310 102 aaKnown RBP11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 116.9 ms