RNA–Protein interactions for RNA: ENST00000560975.5

TPM1-228, Transcript of tropomyosin 1, humanhuman

TSL 5

Gene TPM1, Length 2,855 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-228ENST00000560975 MMD2Q8IY49 270 aa13.8□□□□□ -0.2
TPM1-228ENST00000560975 FAM19A2Q8N3H0 131 aa13.8□□□□□ -0.2
TPM1-228ENST00000560975 UHRF2Q96PU4 802 aa13.8□□□□□ -0.2
TPM1-228ENST00000560975 FSCN3Q9NQT6 498 aa13.8□□□□□ -0.2
TPM1-228ENST00000560975 CEACAM8P31997 349 aaPredicted RBP13.8□□□□□ -0.2
TPM1-228ENST00000560975 Q0VG73 95 aa13.8□□□□□ -0.2
TPM1-228ENST00000560975 GUSBP11Q6P575 273 aa13.8□□□□□ -0.2
TPM1-228ENST00000560975 LINC00596Q86U02 117 aa13.8□□□□□ -0.2
TPM1-228ENST00000560975 RPS19BP1Q86WX3 136 aaKnown RBP13.8□□□□□ -0.2
TPM1-228ENST00000560975 C2CD4DB7Z1M9 353 aa13.79□□□□□ -0.2
TPM1-228ENST00000560975 CEBPDP49716 269 aaPredicted RBP13.79□□□□□ -0.2
TPM1-228ENST00000560975 TCL1AP56279 114 aa13.79□□□□□ -0.2
TPM1-228ENST00000560975 SRYQ05066 204 aa13.79□□□□□ -0.2
TPM1-228ENST00000560975 TRIP6Q15654 476 aaKnown RBP13.79□□□□□ -0.2
TPM1-228ENST00000560975 RPEL1Q2QD12 228 aa13.79□□□□□ -0.2
TPM1-228ENST00000560975 OR52L2PQ8NGH6 319 aa13.79□□□□□ -0.2
TPM1-228ENST00000560975 OCIAD1Q9NX40 245 aa13.79□□□□□ -0.2
TPM1-228ENST00000560975 NCKAP5O14513 1909 aa13.79□□□□□ -0.2
TPM1-228ENST00000560975 NKX6-3A6NJ46 265 aa13.79□□□□□ -0.2
TPM1-228ENST00000560975 C15orf62A8K5M9 175 aa13.79□□□□□ -0.2
TPM1-228ENST00000560975 MRPL33O75394 65 aaKnown RBP13.79□□□□□ -0.2
TPM1-228ENST00000560975 NTF3P20783 257 aa13.79□□□□□ -0.2
TPM1-228ENST00000560975 GNG3P63215 75 aa13.79□□□□□ -0.2
TPM1-228ENST00000560975 VWC2Q2TAL6 325 aa13.79□□□□□ -0.2
TPM1-228ENST00000560975 ZNF497Q6ZNH5 498 aa13.79□□□□□ -0.2
TPM1-228ENST00000560975 OR2M7Q8NG81 312 aa13.79□□□□□ -0.2
TPM1-228ENST00000560975 WDR83OSQ9Y284 106 aa13.79□□□□□ -0.2
TPM1-228ENST00000560975 IGHV1-45A0A0A0MS14 117 aa13.78□□□□□ -0.2
TPM1-228ENST00000560975 A0A1W2PQM1 296 aa13.78□□□□□ -0.2
TPM1-228ENST00000560975 ZNF253O75346 499 aa13.78□□□□□ -0.2
TPM1-228ENST00000560975 CLDN14O95500 239 aa13.78□□□□□ -0.2
TPM1-228ENST00000560975 BRWD1-AS2P59051 145 aa13.78□□□□□ -0.2
TPM1-228ENST00000560975 SSMEM1Q8WWF3 244 aa13.78□□□□□ -0.2
TPM1-228ENST00000560975 A0A1W2PS18 150 aa13.78□□□□□ -0.2
TPM1-228ENST00000560975 RAC2P15153 192 aa13.78□□□□□ -0.2
TPM1-228ENST00000560975 CCL7P80098 99 aa13.78□□□□□ -0.2
TPM1-228ENST00000560975 PDLIM3Q53GG5 364 aaPredicted RBP13.78□□□□□ -0.2
TPM1-228ENST00000560975 SAPCD1Q5SSQ6 148 aa13.78□□□□□ -0.2
TPM1-228ENST00000560975 MRPL14Q6P1L8 145 aaKnown RBP13.78□□□□□ -0.2
TPM1-228ENST00000560975 ERASQ7Z444 233 aa13.78□□□□□ -0.2
TPM1-228ENST00000560975 A8MXE2 369 aa13.77□□□□□ -0.2
TPM1-228ENST00000560975 P0C879 139 aa13.77□□□□□ -0.2
TPM1-228ENST00000560975 C3orf79P0CE67 100 aa13.77□□□□□ -0.2
TPM1-228ENST00000560975 LCN12Q6JVE5 192 aa13.77□□□□□ -0.2
TPM1-228ENST00000560975 ZNF645Q8N7E2 425 aa13.77□□□□□ -0.2
TPM1-228ENST00000560975 VPS13AQ96RL7 3174 aa13.77□□□□□ -0.2
TPM1-228ENST00000560975 IGHV5-10-1A0A0J9YXX1 117 aa13.77□□□□□ -0.21
TPM1-228ENST00000560975 DNPH1O43598 174 aa13.77□□□□□ -0.21
TPM1-228ENST00000560975 NEURL1O76050 574 aa13.77□□□□□ -0.21
TPM1-228ENST00000560975 EN2P19622 333 aaPredicted RBP13.77□□□□□ -0.21
TPM1-228ENST00000560975 ZNF83P51522 516 aa13.77□□□□□ -0.21
TPM1-228ENST00000560975 FXYD3Q14802 87 aa13.77□□□□□ -0.21
TPM1-228ENST00000560975 SPATA31B1PQ5VZV4 182 aa13.77□□□□□ -0.21
TPM1-228ENST00000560975 MOB1BQ7L9L4 216 aa13.77□□□□□ -0.21
TPM1-228ENST00000560975 LYG1Q8N1E2 194 aa13.77□□□□□ -0.21
TPM1-228ENST00000560975 ORAOV1Q8WV07 137 aa13.77□□□□□ -0.21
TPM1-228ENST00000560975 COX6A1P12074 109 aa13.77□□□□□ -0.21
TPM1-228ENST00000560975 KLF3P57682 345 aaPredicted RBP13.77□□□□□ -0.21
TPM1-228ENST00000560975 GAL3ST2Q9H3Q3 398 aa13.77□□□□□ -0.21
TPM1-228ENST00000560975 URB1O60287 2271 aaKnown RBP13.76□□□□□ -0.21
TPM1-228ENST00000560975 DPRXA6NFQ7 191 aa13.76□□□□□ -0.21
TPM1-228ENST00000560975 SRD5A2P31213 254 aa13.76□□□□□ -0.21
TPM1-228ENST00000560975 HOXA4Q00056 320 aaPredicted RBP13.76□□□□□ -0.21
TPM1-228ENST00000560975 VASH2Q86V25 355 aa13.76□□□□□ -0.21
TPM1-228ENST00000560975 RAB1CQ92928 201 aa13.76□□□□□ -0.21
TPM1-228ENST00000560975 IMMP1LQ96LU5 166 aa13.76□□□□□ -0.21
TPM1-228ENST00000560975 ALKBH7Q9BT30 221 aaPredicted RBP13.76□□□□□ -0.21
TPM1-228ENST00000560975 CXorf1O96002 111 aa13.76□□□□□ -0.21
TPM1-228ENST00000560975 STAG3L2P0CL84 134 aa13.76□□□□□ -0.21
TPM1-228ENST00000560975 STAG3L3P0CL85 134 aa13.76□□□□□ -0.21
TPM1-228ENST00000560975 SRIP30626 198 aa13.76□□□□□ -0.21
TPM1-228ENST00000560975 GFRA1P56159 465 aa13.76□□□□□ -0.21
TPM1-228ENST00000560975 MRPL54Q6P161 138 aaKnown RBP13.76□□□□□ -0.21
TPM1-228ENST00000560975 IFI44Q8TCB0 444 aa13.76□□□□□ -0.21
TPM1-228ENST00000560975 KCNE4Q8WWG9 221 aa13.76□□□□□ -0.21
TPM1-228ENST00000560975 KCNS1Q96KK3 526 aa13.76□□□□□ -0.21
TPM1-228ENST00000560975 FOXH1O75593 365 aa13.75□□□□□ -0.21
TPM1-228ENST00000560975 P04436 131 aa13.75□□□□□ -0.21
TPM1-228ENST00000560975 CATR1Q13166 79 aa13.75□□□□□ -0.21
TPM1-228ENST00000560975 UBE2V1Q13404 147 aa13.75□□□□□ -0.21
TPM1-228ENST00000560975 EAF1Q96JC9 268 aaPredicted RBP13.75□□□□□ -0.21
TPM1-228ENST00000560975 RNASE7Q9H1E1 156 aaKnown RBP13.75□□□□□ -0.21
TPM1-228ENST00000560975 SH2D2AQ9NP31 389 aa13.75□□□□□ -0.21
TPM1-228ENST00000560975 IGHV3-43A0A0B4J1X8 118 aa13.75□□□□□ -0.21
TPM1-228ENST00000560975 IGHV3-43DP0DP04 118 aa13.75□□□□□ -0.21
TPM1-228ENST00000560975 TREML4Q6UXN2 200 aa13.75□□□□□ -0.21
TPM1-228ENST00000560975 DOLPP1Q86YN1 238 aa13.75□□□□□ -0.21
TPM1-228ENST00000560975 MGST2Q99735 147 aa13.75□□□□□ -0.21
TPM1-228ENST00000560975 SFXN3Q9BWM7 321 aa13.75□□□□□ -0.21
TPM1-228ENST00000560975 MS4A5Q9H3V2 200 aa13.75□□□□□ -0.21
TPM1-228ENST00000560975 V9GYV3 84 aa13.75□□□□□ -0.21
TPM1-228ENST00000560975 TNRC6AQ8NDV7 1962 aaKnown RBP13.75□□□□□ -0.21
TPM1-228ENST00000560975 OR5B21A6NL26 309 aa13.74□□□□□ -0.21
TPM1-228ENST00000560975 DEFB108AA8MXU0 73 aa13.74□□□□□ -0.21
TPM1-228ENST00000560975 ZNF718Q3SXZ3 478 aa13.74□□□□□ -0.21
TPM1-228ENST00000560975 GMPPAQ96IJ6 420 aaPredicted RBP13.74□□□□□ -0.21
TPM1-228ENST00000560975 KCNIP1Q9NZI2 227 aa13.74□□□□□ -0.21
TPM1-228ENST00000560975 LINC00473A8K010 186 aa13.74□□□□□ -0.21
TPM1-228ENST00000560975 RAB29O14966 203 aa13.74□□□□□ -0.21
TPM1-228ENST00000560975 NXPH2O95156 264 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms