RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 NECAP2Q9NVZ3 263 aa7.39□□□□□ -1.23
LDLR-211ENST00000560173 TET2Q6N021 2002 aaPredicted RBP7.39□□□□□ -1.23
LDLR-211ENST00000560173 PSMB11A5LHX3 300 aa7.38□□□□□ -1.23
LDLR-211ENST00000560173 ADARB2-AS1A8MUL3 147 aa7.38□□□□□ -1.23
LDLR-211ENST00000560173 AP4M1O00189 453 aa7.38□□□□□ -1.23
LDLR-211ENST00000560173 RRHO14718 337 aa7.38□□□□□ -1.23
LDLR-211ENST00000560173 ARPC1BO15143 372 aaKnown RBP7.38□□□□□ -1.23
LDLR-211ENST00000560173 SSNA1O43805 119 aa7.38□□□□□ -1.23
LDLR-211ENST00000560173 SLC22A5O76082 557 aa7.38□□□□□ -1.23
LDLR-211ENST00000560173 TSPAN15O95858 294 aa7.38□□□□□ -1.23
LDLR-211ENST00000560173 PPYP01298 95 aa7.38□□□□□ -1.23
LDLR-211ENST00000560173 IGLV2-14P01704 120 aa7.38□□□□□ -1.23
LDLR-211ENST00000560173 HLA-DRB1P01911 266 aa7.38□□□□□ -1.23
LDLR-211ENST00000560173 RLN1P04808 185 aa7.38□□□□□ -1.23
LDLR-211ENST00000560173 AADACP22760 399 aa7.38□□□□□ -1.23
LDLR-211ENST00000560173 FCGR2CP31995 323 aa7.38□□□□□ -1.23
LDLR-211ENST00000560173 DUTP33316 252 aaKnown RBP7.38□□□□□ -1.23
LDLR-211ENST00000560173 THBS3P49746 956 aa7.38□□□□□ -1.23
LDLR-211ENST00000560173 TAGLNQ01995 201 aaKnown RBP7.38□□□□□ -1.23
LDLR-211ENST00000560173 SURF2Q15527 256 aaPredicted RBP7.38□□□□□ -1.23
LDLR-211ENST00000560173 C2orf68Q2NKX9 166 aa7.38□□□□□ -1.23
LDLR-211ENST00000560173 ZFP69Q49AA0 526 aa7.38□□□□□ -1.23
LDLR-211ENST00000560173 TCTEX1D4Q5JR98 221 aa7.38□□□□□ -1.23
LDLR-211ENST00000560173 C10orf99Q6UWK7 81 aa7.38□□□□□ -1.23
LDLR-211ENST00000560173 CENPVQ7Z7K6 275 aaPredicted RBP7.38□□□□□ -1.23
LDLR-211ENST00000560173 FOXRED2Q8IWF2 684 aa7.38□□□□□ -1.23
LDLR-211ENST00000560173 STPG2Q8N412 459 aa7.38□□□□□ -1.23
LDLR-211ENST00000560173 OR5AU1Q8NGC0 362 aa7.38□□□□□ -1.23
LDLR-211ENST00000560173 DDB2Q92466 427 aa7.38□□□□□ -1.23
LDLR-211ENST00000560173 ADTRPQ96IZ2 230 aa7.38□□□□□ -1.23
LDLR-211ENST00000560173 NOL4LQ96MY1 436 aaPredicted RBP7.38□□□□□ -1.23
LDLR-211ENST00000560173 RNF5Q99942 180 aa7.38□□□□□ -1.23
LDLR-211ENST00000560173 CITED2Q99967 270 aaPredicted RBP7.38□□□□□ -1.23
LDLR-211ENST00000560173 SLC35D1Q9NTN3 355 aa7.38□□□□□ -1.23
LDLR-211ENST00000560173 KIAA1456Q9P272 454 aa7.38□□□□□ -1.23
LDLR-211ENST00000560173 LINC00527Q9UJ94 153 aa7.38□□□□□ -1.23
LDLR-211ENST00000560173 ZNF580Q9UK33 172 aa7.38□□□□□ -1.23
LDLR-211ENST00000560173 PLXNB1O43157 2135 aa7.37□□□□□ -1.23
LDLR-211ENST00000560173 PRKDCP78527 4128 aaKnown RBP7.37□□□□□ -1.23
LDLR-211ENST00000560173 IGHV7-81A0A0B4J1V7 117 aa7.37□□□□□ -1.23
LDLR-211ENST00000560173 A0A0B4J293 547 aa7.37□□□□□ -1.23
LDLR-211ENST00000560173 LINC00473A8K010 186 aa7.37□□□□□ -1.23
LDLR-211ENST00000560173 BOLA2-SMG1P6H3BVE0 249 aa7.37□□□□□ -1.23
LDLR-211ENST00000560173 SPDEFO95238 335 aa7.37□□□□□ -1.23
LDLR-211ENST00000560173 IGF1P05019 195 aa7.37□□□□□ -1.23
LDLR-211ENST00000560173 ANXA3P12429 323 aa7.37□□□□□ -1.23
LDLR-211ENST00000560173 HRH1P35367 487 aa7.37□□□□□ -1.23
LDLR-211ENST00000560173 TSPAN5P62079 268 aa7.37□□□□□ -1.23
LDLR-211ENST00000560173 CD83Q01151 205 aa7.37□□□□□ -1.23
LDLR-211ENST00000560173 DEFA6Q01524 100 aa7.37□□□□□ -1.23
LDLR-211ENST00000560173 CBX3Q13185 183 aa7.37□□□□□ -1.23
LDLR-211ENST00000560173 EIF4EBP1Q13541 118 aaPredicted RBP7.37□□□□□ -1.23
LDLR-211ENST00000560173 PSG5Q15238 335 aa7.37□□□□□ -1.23
LDLR-211ENST00000560173 MSMO1Q15800 293 aa7.37□□□□□ -1.23
LDLR-211ENST00000560173 RTL8BQ17RB0 113 aa7.37□□□□□ -1.23
LDLR-211ENST00000560173 TMEM177Q53S58 311 aa7.37□□□□□ -1.23
LDLR-211ENST00000560173 ZNF660Q6AZW8 331 aaPredicted RBP7.37□□□□□ -1.23
LDLR-211ENST00000560173 TREML4Q6UXN2 200 aa7.37□□□□□ -1.23
LDLR-211ENST00000560173 OVCH2Q7RTZ1 564 aa7.37□□□□□ -1.23
LDLR-211ENST00000560173 NDUFA11Q86Y39 141 aa7.37□□□□□ -1.23
LDLR-211ENST00000560173 BVESQ8NE79 360 aa7.37□□□□□ -1.23
LDLR-211ENST00000560173 OR4X2Q8NGF9 303 aa7.37□□□□□ -1.23
LDLR-211ENST00000560173 TERB2Q8NHR7 220 aa7.37□□□□□ -1.23
LDLR-211ENST00000560173 FLYWCH2Q96CP2 140 aaKnown RBP7.37□□□□□ -1.23
LDLR-211ENST00000560173 TSNAXQ99598 290 aaKnown RBP7.37□□□□□ -1.23
LDLR-211ENST00000560173 FBXL15Q9H469 300 aa7.37□□□□□ -1.23
LDLR-211ENST00000560173 EHFQ9NZC4 300 aa7.37□□□□□ -1.23
LDLR-211ENST00000560173 M0QYG6 137 aa7.36□□□□□ -1.23
LDLR-211ENST00000560173 IGLV2-23P01705 113 aa7.36□□□□□ -1.23
LDLR-211ENST00000560173 PMP2P02689 132 aa7.36□□□□□ -1.23
LDLR-211ENST00000560173 ZNF735P0CB33 412 aa7.36□□□□□ -1.23
LDLR-211ENST00000560173 RRASP10301 218 aa7.36□□□□□ -1.23
LDLR-211ENST00000560173 RPS16P62249 146 aaKnown RBP7.36□□□□□ -1.23
LDLR-211ENST00000560173 RPL30P62888 115 aaKnown RBP7.36□□□□□ -1.23
LDLR-211ENST00000560173 NDPQ00604 133 aa7.36□□□□□ -1.23
LDLR-211ENST00000560173 CFHR3Q02985 330 aa7.36□□□□□ -1.23
LDLR-211ENST00000560173 SCGB2B2Q4G0G5 96 aa7.36□□□□□ -1.23
LDLR-211ENST00000560173 LIN54Q6MZP7 749 aa7.36□□□□□ -1.23
LDLR-211ENST00000560173 LPCAT3Q6P1A2 487 aa7.36□□□□□ -1.23
LDLR-211ENST00000560173 DHRS11Q6UWP2 260 aa7.36□□□□□ -1.23
LDLR-211ENST00000560173 KCTD9Q7L273 389 aa7.36□□□□□ -1.23
LDLR-211ENST00000560173 ZNF329Q86UD4 541 aa7.36□□□□□ -1.23
LDLR-211ENST00000560173 SECTM1Q8WVN6 248 aa7.36□□□□□ -1.23
LDLR-211ENST00000560173 ST6GAL2Q96JF0 529 aa7.36□□□□□ -1.23
LDLR-211ENST00000560173 HARBI1Q96MB7 349 aa7.36□□□□□ -1.23
LDLR-211ENST00000560173 HSD17B10Q99714 261 aaKnown RBP7.36□□□□□ -1.23
LDLR-211ENST00000560173 TINAGL1Q9GZM7 467 aaPredicted RBP7.36□□□□□ -1.23
LDLR-211ENST00000560173 CCL28Q9NRJ3 127 aa7.36□□□□□ -1.23
LDLR-211ENST00000560173 METTL1Q9UBP6 276 aaKnown RBP7.36□□□□□ -1.23
LDLR-211ENST00000560173 TNCP24821 2201 aa7.35□□□□□ -1.23
LDLR-211ENST00000560173 PIGBOS1A0A0B4J2F0 54 aa7.35□□□□□ -1.23
LDLR-211ENST00000560173 TCRBV4S1A1TA0A5B7 111 aa7.35□□□□□ -1.23
LDLR-211ENST00000560173 FCN1O00602 326 aa7.35□□□□□ -1.23
LDLR-211ENST00000560173 ATP6V0E1O15342 81 aa7.35□□□□□ -1.23
LDLR-211ENST00000560173 SLC25A17O43808 307 aa7.35□□□□□ -1.23
LDLR-211ENST00000560173 CRYZL1O95825 349 aa7.35□□□□□ -1.23
LDLR-211ENST00000560173 C1QBP02746 253 aa7.35□□□□□ -1.23
LDLR-211ENST00000560173 OPN1MWP04001 364 aa7.35□□□□□ -1.23
LDLR-211ENST00000560173 SULT1A3P0DMM9 295 aa7.35□□□□□ -1.23
LDLR-211ENST00000560173 SULT1A4P0DMN0 295 aa7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 83.7 ms