RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 RHOBP62745 196 aa9.17□□□□□ -0.94
USP3-206ENST00000558157 OR1C1Q15619 314 aa9.17□□□□□ -0.94
USP3-206ENST00000558157 DEFB109BQ30KR1 87 aa9.17□□□□□ -0.94
USP3-206ENST00000558157 PRR27Q6MZM9 219 aa9.17□□□□□ -0.94
USP3-206ENST00000558157 TMEM14EPQ6UXP3 125 aa9.17□□□□□ -0.94
USP3-206ENST00000558157 OR10V1Q8NGI7 309 aa9.17□□□□□ -0.94
USP3-206ENST00000558157 RAB1CQ92928 201 aa9.17□□□□□ -0.94
USP3-206ENST00000558157 TMEM147Q9BVK8 224 aa9.17□□□□□ -0.94
USP3-206ENST00000558157 HES7Q9BYE0 225 aa9.17□□□□□ -0.94
USP3-206ENST00000558157 ZNF391Q9UJN7 358 aa9.17□□□□□ -0.94
USP3-206ENST00000558157 KIAA2026Q5HYC2 2103 aa9.17□□□□□ -0.94
USP3-206ENST00000558157 A0A0G2JRQ6 117 aa9.16□□□□□ -0.94
USP3-206ENST00000558157 C5orf63A6NC05 138 aa9.16□□□□□ -0.94
USP3-206ENST00000558157 PINLYPA6NC86 204 aa9.16□□□□□ -0.94
USP3-206ENST00000558157 M0R135 149 aa9.16□□□□□ -0.94
USP3-206ENST00000558157 C1QTNF9P0C862 333 aa9.16□□□□□ -0.94
USP3-206ENST00000558157 CCL11P51671 97 aa9.16□□□□□ -0.94
USP3-206ENST00000558157 GNB1P62873 340 aa9.16□□□□□ -0.94
USP3-206ENST00000558157 MYBPHQ13203 477 aa9.16□□□□□ -0.94
USP3-206ENST00000558157 MAJINQ3KP22 176 aa9.16□□□□□ -0.94
USP3-206ENST00000558157 SLC25A53Q5H9E4 307 aa9.16□□□□□ -0.94
USP3-206ENST00000558157 OR4P4Q8NGL7 312 aa9.16□□□□□ -0.94
USP3-206ENST00000558157 TNFRSF14Q92956 283 aa9.16□□□□□ -0.94
USP3-206ENST00000558157 ZNF799Q96GE5 643 aa9.16□□□□□ -0.94
USP3-206ENST00000558157 MSRB2Q9Y3D2 182 aa9.16□□□□□ -0.94
USP3-206ENST00000558157 LY96Q9Y6Y9 160 aa9.16□□□□□ -0.94
USP3-206ENST00000558157 NCKAP5O14513 1909 aa9.16□□□□□ -0.94
USP3-206ENST00000558157 SHANK1Q9Y566 2161 aa9.16□□□□□ -0.94
USP3-206ENST00000558157 IGKV1-27A0A075B6S5 117 aa9.16□□□□□ -0.94
USP3-206ENST00000558157 NPIPA2E9PIF3 369 aa9.16□□□□□ -0.94
USP3-206ENST00000558157 ZNF324O75467 553 aaPredicted RBP9.16□□□□□ -0.94
USP3-206ENST00000558157 LGALS4P56470 323 aa9.16□□□□□ -0.94
USP3-206ENST00000558157 TMEM42Q69YG0 159 aa9.16□□□□□ -0.94
USP3-206ENST00000558157 STUMQ69YW2 141 aa9.16□□□□□ -0.94
USP3-206ENST00000558157 FOXL2NBQ6ZUU3 175 aa9.16□□□□□ -0.94
USP3-206ENST00000558157 OXGR1Q96P68 337 aa9.16□□□□□ -0.94
USP3-206ENST00000558157 UHRF2Q96PU4 802 aa9.16□□□□□ -0.94
USP3-206ENST00000558157 SFXN3Q9BWM7 321 aa9.16□□□□□ -0.94
USP3-206ENST00000558157 CCL28Q9NRJ3 127 aa9.16□□□□□ -0.94
USP3-206ENST00000558157 CACNG5Q9UF02 275 aa9.16□□□□□ -0.94
USP3-206ENST00000558157 IGKV1D-13A0A0B4J2D9 117 aa9.15□□□□□ -0.94
USP3-206ENST00000558157 RBFOX2O43251 390 aaKnown RBP eCLIP9.15□□□□□ -0.949e-6■□□□□ 10.4
USP3-206ENST00000558157 RAMP3O60896 148 aa9.15□□□□□ -0.94
USP3-206ENST00000558157 NAPSAO96009 420 aa9.15□□□□□ -0.94
USP3-206ENST00000558157 IGKV1-13P0DP09 117 aa9.15□□□□□ -0.94
USP3-206ENST00000558157 IAPPP10997 89 aa9.15□□□□□ -0.94
USP3-206ENST00000558157 FUT6P51993 359 aa9.15□□□□□ -0.94
USP3-206ENST00000558157 DSCR4P56555 118 aaPredicted RBP9.15□□□□□ -0.94
USP3-206ENST00000558157 SNAI3Q3KNW1 292 aa9.15□□□□□ -0.94
USP3-206ENST00000558157 TCF24Q7RTU0 167 aa9.15□□□□□ -0.94
USP3-206ENST00000558157 NIT1Q86X76 327 aa9.15□□□□□ -0.94
USP3-206ENST00000558157 Q8NFD4 153 aa9.15□□□□□ -0.94
USP3-206ENST00000558157 OR4F17Q8NGA8 305 aa9.15□□□□□ -0.94
USP3-206ENST00000558157 GATAD1Q8WUU5 269 aa9.15□□□□□ -0.94
USP3-206ENST00000558157 QTRT1Q9BXR0 403 aaKnown RBP9.15□□□□□ -0.94
USP3-206ENST00000558157 GNB4Q9HAV0 340 aa9.15□□□□□ -0.94
USP3-206ENST00000558157 TRAV9-2A0A087WT02 112 aa9.15□□□□□ -0.94
USP3-206ENST00000558157 IGKV1-12A0A0C4DH73 117 aa9.15□□□□□ -0.94
USP3-206ENST00000558157 H3BML4 177 aa9.15□□□□□ -0.94
USP3-206ENST00000558157 SH2D1BO14796 132 aa9.15□□□□□ -0.94
USP3-206ENST00000558157 EFNA2O43921 213 aa9.15□□□□□ -0.94
USP3-206ENST00000558157 NDUFB4O95168 129 aa9.15□□□□□ -0.94
USP3-206ENST00000558157 IGKV1D-12P01611 117 aa9.15□□□□□ -0.94
USP3-206ENST00000558157 C3orf79P0CE67 100 aa9.15□□□□□ -0.94
USP3-206ENST00000558157 BMI1P35226 326 aa9.15□□□□□ -0.94
USP3-206ENST00000558157 ARG2P78540 354 aa9.15□□□□□ -0.94
USP3-206ENST00000558157 C10orf128Q5T292 105 aa9.15□□□□□ -0.94
USP3-206ENST00000558157 VWA1Q6PCB0 445 aa9.15□□□□□ -0.94
USP3-206ENST00000558157 BRICD5Q6PL45 260 aa9.15□□□□□ -0.94
USP3-206ENST00000558157 MDS2Q8NDY4 140 aa9.15□□□□□ -0.94
USP3-206ENST00000558157 FDCSPQ8NFU4 85 aa9.15□□□□□ -0.94
USP3-206ENST00000558157 BORCS7Q96B45 105 aa9.15□□□□□ -0.94
USP3-206ENST00000558157 TMEM204Q9BSN7 226 aa9.15□□□□□ -0.94
USP3-206ENST00000558157 FAM103A1Q9BTL3 118 aaKnown RBP9.15□□□□□ -0.94
USP3-206ENST00000558157 RNF114Q9Y508 228 aa9.15□□□□□ -0.94
USP3-206ENST00000558157 A0A1W2PS18 150 aa9.14□□□□□ -0.95
USP3-206ENST00000558157 SNURFLB1AK76 121 aa9.14□□□□□ -0.95
USP3-206ENST00000558157 CDC34P49427 236 aaPredicted RBP9.14□□□□□ -0.95
USP3-206ENST00000558157 CLDN15P56746 228 aa9.14□□□□□ -0.95
USP3-206ENST00000558157 SPANXN5Q5MJ07 72 aa9.14□□□□□ -0.95
USP3-206ENST00000558157 FAM71F2Q6NXP2 309 aa9.14□□□□□ -0.95
USP3-206ENST00000558157 MYPOPQ86VE0 399 aaPredicted RBP9.14□□□□□ -0.95
USP3-206ENST00000558157 BCL2L2Q92843 193 aaPredicted RBP9.14□□□□□ -0.95
USP3-206ENST00000558157 ATP23Q9Y6H3 246 aa9.14□□□□□ -0.95
USP3-206ENST00000558157 SPTBN4Q9H254 2564 aa9.14□□□□□ -0.95
USP3-206ENST00000558157 CEP295Q9C0D2 2601 aa9.14□□□□□ -0.95
USP3-206ENST00000558157 RFPL3SP0C7P2 107 aa9.14□□□□□ -0.95
USP3-206ENST00000558157 RSPO1Q2MKA7 263 aaPredicted RBP9.14□□□□□ -0.95
USP3-206ENST00000558157 VHLLQ6RSH7 139 aa9.14□□□□□ -0.95
USP3-206ENST00000558157 Q6ZRM9 215 aa9.14□□□□□ -0.95
USP3-206ENST00000558157 FAM173AQ9BQD7 235 aa9.14□□□□□ -0.95
USP3-206ENST00000558157 TRAV34A0A0B4J273 112 aa9.13□□□□□ -0.95
USP3-206ENST00000558157 HMGB3O15347 200 aaKnown RBP9.13□□□□□ -0.95
USP3-206ENST00000558157 ZIC3O60481 467 aa9.13□□□□□ -0.95
USP3-206ENST00000558157 OR7C1O76099 320 aaPredicted RBP9.13□□□□□ -0.95
USP3-206ENST00000558157 FKBP2P26885 142 aaKnown RBP9.13□□□□□ -0.95
USP3-206ENST00000558157 SRD5A2P31213 254 aa9.13□□□□□ -0.95
USP3-206ENST00000558157 PSG4Q00888 419 aa9.13□□□□□ -0.95
USP3-206ENST00000558157 RPEL1Q2QD12 228 aa9.13□□□□□ -0.95
USP3-206ENST00000558157 VWC2Q2TAL6 325 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms