RNA–Protein interactions for RNA: ENST00000557307.1

SYNE2-227, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 526 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-227ENST00000557307 THAP7Q9BT49 309 aaPredicted RBP8.31□□□□□ -1.08
SYNE2-227ENST00000557307 VCX3BQ9H321 246 aa8.31□□□□□ -1.08
SYNE2-227ENST00000557307 STUB1Q9UNE7 303 aa8.31□□□□□ -1.08
SYNE2-227ENST00000557307 RBM7Q9Y580 266 aaKnown RBP8.31□□□□□ -1.08
SYNE2-227ENST00000557307 TEX22C9J3V5 150 aa8.3□□□□□ -1.08
SYNE2-227ENST00000557307 BMPR1BO00238 502 aa8.3□□□□□ -1.08
SYNE2-227ENST00000557307 DIRAS3O95661 229 aa8.3□□□□□ -1.08
SYNE2-227ENST00000557307 HLA-DQB1P01920 261 aa8.3□□□□□ -1.08
SYNE2-227ENST00000557307 CSN3P07498 182 aa8.3□□□□□ -1.08
SYNE2-227ENST00000557307 GALP22466 123 aa8.3□□□□□ -1.08
SYNE2-227ENST00000557307 DTYMKP23919 212 aa8.3□□□□□ -1.08
SYNE2-227ENST00000557307 SDC2P34741 201 aa8.3□□□□□ -1.08
SYNE2-227ENST00000557307 TALDO1P37837 337 aa8.3□□□□□ -1.08
SYNE2-227ENST00000557307 RTL8BQ17RB0 113 aa8.3□□□□□ -1.08
SYNE2-227ENST00000557307 HACD4Q5VWC8 232 aa8.3□□□□□ -1.08
SYNE2-227ENST00000557307 KCTD9Q7L273 389 aa8.3□□□□□ -1.08
SYNE2-227ENST00000557307 ZNF645Q8N7E2 425 aa8.3□□□□□ -1.08
SYNE2-227ENST00000557307 TEX45Q8NA69 505 aa8.3□□□□□ -1.08
SYNE2-227ENST00000557307 OR4C12Q96R67 309 aa8.3□□□□□ -1.08
SYNE2-227ENST00000557307 RANGRFQ9HD47 186 aaPredicted RBP8.3□□□□□ -1.08
SYNE2-227ENST00000557307 AKIP1Q9NQ31 210 aa8.3□□□□□ -1.08
SYNE2-227ENST00000557307 RBMX2Q9Y388 322 aaKnown RBP8.3□□□□□ -1.08
SYNE2-227ENST00000557307 OR2W1Q9Y3N9 320 aa8.3□□□□□ -1.08
SYNE2-227ENST00000557307 DMRT1Q9Y5R6 373 aa8.3□□□□□ -1.08
SYNE2-227ENST00000557307 S4R3C0 116 aa8.3□□□□□ -1.08
SYNE2-227ENST00000557307 METTL21EPA6NDL7 271 aa8.29□□□□□ -1.08
SYNE2-227ENST00000557307 CGB1A6NKQ9 187 aa8.29□□□□□ -1.08
SYNE2-227ENST00000557307 PPP5D1E7EU14 171 aa8.29□□□□□ -1.08
SYNE2-227ENST00000557307 TNFSF12O43508 249 aa8.29□□□□□ -1.08
SYNE2-227ENST00000557307 TUSC2O75896 110 aa8.29□□□□□ -1.08
SYNE2-227ENST00000557307 HLA-AP01891 365 aaKnown RBP8.29□□□□□ -1.08
SYNE2-227ENST00000557307 OR9G9P0C7N8 305 aa8.29□□□□□ -1.08
SYNE2-227ENST00000557307 RHOGP84095 191 aa8.29□□□□□ -1.08
SYNE2-227ENST00000557307 EXOSC2Q13868 293 aaKnown RBP8.29□□□□□ -1.08
SYNE2-227ENST00000557307 CDK10Q15131 360 aa8.29□□□□□ -1.08
SYNE2-227ENST00000557307 VMA21Q3ZAQ7 101 aa8.29□□□□□ -1.08
SYNE2-227ENST00000557307 OR9G4Q8NGQ1 327 aa8.29□□□□□ -1.08
SYNE2-227ENST00000557307 TM2D3Q9BRN9 247 aa8.29□□□□□ -1.08
SYNE2-227ENST00000557307 CENPOQ9BU64 300 aa8.29□□□□□ -1.08
SYNE2-227ENST00000557307 C19orf73Q9NVV2 129 aa8.29□□□□□ -1.08
SYNE2-227ENST00000557307 RHBDL2Q9NX52 303 aa8.29□□□□□ -1.08
SYNE2-227ENST00000557307 PEF1Q9UBV8 284 aaKnown RBP8.29□□□□□ -1.08
SYNE2-227ENST00000557307 TRBV9A0A0B4J1U6 114 aa8.28□□□□□ -1.08
SYNE2-227ENST00000557307 MEIS3P1A6NDR6 274 aa8.28□□□□□ -1.08
SYNE2-227ENST00000557307 OR2J3O76001 311 aa8.28□□□□□ -1.08
SYNE2-227ENST00000557307 BRI3O95415 125 aa8.28□□□□□ -1.08
SYNE2-227ENST00000557307 IGHV3-23P01764 117 aa8.28□□□□□ -1.08
SYNE2-227ENST00000557307 IL6RP08887 468 aaPredicted RBP8.28□□□□□ -1.08
SYNE2-227ENST00000557307 RRASP10301 218 aa8.28□□□□□ -1.08
SYNE2-227ENST00000557307 CD40LGP29965 261 aa8.28□□□□□ -1.08
SYNE2-227ENST00000557307 GNG2P59768 71 aa8.28□□□□□ -1.08
SYNE2-227ENST00000557307 CBX3Q13185 183 aa8.28□□□□□ -1.08
SYNE2-227ENST00000557307 CASC10Q5T4H9 136 aa8.28□□□□□ -1.08
SYNE2-227ENST00000557307 ZNF773Q6PK81 442 aa8.28□□□□□ -1.08
SYNE2-227ENST00000557307 ANKRD13BQ86YJ7 626 aa8.28□□□□□ -1.08
SYNE2-227ENST00000557307 OSR1Q8TAX0 266 aaPredicted RBP8.28□□□□□ -1.08
SYNE2-227ENST00000557307 MUC7Q8TAX7 377 aa8.28□□□□□ -1.08
SYNE2-227ENST00000557307 SNAPC3Q92966 411 aa8.28□□□□□ -1.08
SYNE2-227ENST00000557307 WFDC10AQ9H1F0 79 aa8.28□□□□□ -1.08
SYNE2-227ENST00000557307 RETNQ9HD89 108 aa8.28□□□□□ -1.08
SYNE2-227ENST00000557307 CCL28Q9NRJ3 127 aa8.28□□□□□ -1.08
SYNE2-227ENST00000557307 TAS2R8Q9NYW2 309 aa8.28□□□□□ -1.08
SYNE2-227ENST00000557307 ANXA10Q9UJ72 324 aa8.28□□□□□ -1.08
SYNE2-227ENST00000557307 SPATA2Q9UM82 520 aa8.28□□□□□ -1.08
SYNE2-227ENST00000557307 TRAV18A0A075B6X5 111 aa8.27□□□□□ -1.09
SYNE2-227ENST00000557307 A0A0G2JLM5 398 aa8.27□□□□□ -1.09
SYNE2-227ENST00000557307 LOC100506127A0A0U1RQW1 187 aa8.27□□□□□ -1.09
SYNE2-227ENST00000557307 MPPED1O15442 326 aa8.27□□□□□ -1.09
SYNE2-227ENST00000557307 MRPS14O60783 128 aaKnown RBP8.27□□□□□ -1.09
SYNE2-227ENST00000557307 AREGP15514 252 aa8.27□□□□□ -1.09
SYNE2-227ENST00000557307 ZP3P21754 424 aa8.27□□□□□ -1.09
SYNE2-227ENST00000557307 AADACP22760 399 aa8.27□□□□□ -1.09
SYNE2-227ENST00000557307 NEDD8Q15843 81 aa8.27□□□□□ -1.09
SYNE2-227ENST00000557307 CNIH2Q6PI25 160 aa8.27□□□□□ -1.09
SYNE2-227ENST00000557307 SSX9Q7RTT3 188 aa8.27□□□□□ -1.09
SYNE2-227ENST00000557307 PUSL1Q8N0Z8 303 aaKnown RBP8.27□□□□□ -1.09
SYNE2-227ENST00000557307 TCTEX1D2Q8WW35 142 aa8.27□□□□□ -1.09
SYNE2-227ENST00000557307 CACNG8Q8WXS5 425 aa8.27□□□□□ -1.09
SYNE2-227ENST00000557307 ADTRPQ96IZ2 230 aa8.27□□□□□ -1.09
SYNE2-227ENST00000557307 DCUN1D5Q9BTE7 237 aa8.27□□□□□ -1.09
SYNE2-227ENST00000557307 ELOVL1Q9BW60 279 aa8.27□□□□□ -1.09
SYNE2-227ENST00000557307 SSR3Q9UNL2 185 aa8.27□□□□□ -1.09
SYNE2-227ENST00000557307 ALMS1Q8TCU4 4167 aa8.27□□□□□ -1.09
SYNE2-227ENST00000557307 TRAV3A0A0B4J244 114 aa8.26□□□□□ -1.09
SYNE2-227ENST00000557307 C3orf84H3BNL1 204 aa8.26□□□□□ -1.09
SYNE2-227ENST00000557307 KBTBD11O94819 623 aa8.26□□□□□ -1.09
SYNE2-227ENST00000557307 NDUFB8O95169 186 aa8.26□□□□□ -1.09
SYNE2-227ENST00000557307 REG1AP05451 166 aa8.26□□□□□ -1.09
SYNE2-227ENST00000557307 MECP2P51608 486 aaKnown RBP8.26□□□□□ -1.09
SYNE2-227ENST00000557307 RPEL1Q2QD12 228 aa8.26□□□□□ -1.09
SYNE2-227ENST00000557307 IDNKQ5T6J7 187 aa8.26□□□□□ -1.09
SYNE2-227ENST00000557307 ZFAND6Q6FIF0 208 aa8.26□□□□□ -1.09
SYNE2-227ENST00000557307 TPRA1Q86W33 373 aa8.26□□□□□ -1.09
SYNE2-227ENST00000557307 MFSD4AQ8N468 514 aa8.26□□□□□ -1.09
SYNE2-227ENST00000557307 TTC9CQ8N5M4 171 aa8.26□□□□□ -1.09
SYNE2-227ENST00000557307 BEST4Q8NFU0 473 aa8.26□□□□□ -1.09
SYNE2-227ENST00000557307 SECTM1Q8WVN6 248 aa8.26□□□□□ -1.09
SYNE2-227ENST00000557307 CCDC140Q96MF4 163 aa8.26□□□□□ -1.09
SYNE2-227ENST00000557307 TMEM68Q96MH6 324 aa8.26□□□□□ -1.09
SYNE2-227ENST00000557307 FANCD2OSQ96PS1 177 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms