RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 CCDC190Q86UF4 302 aa10.68□□□□□ -0.7
SHMT2-228ENST00000557302 SLC38A6Q8IZM9 456 aa10.68□□□□□ -0.7
SHMT2-228ENST00000557302 TEX45Q8NA69 505 aa10.68□□□□□ -0.7
SHMT2-228ENST00000557302 OR4D10Q8NGI6 311 aa10.68□□□□□ -0.7
SHMT2-228ENST00000557302 OR6Q1Q8NGQ2 317 aa10.68□□□□□ -0.7
SHMT2-228ENST00000557302 BATF3Q9NR55 127 aa10.68□□□□□ -0.7
SHMT2-228ENST00000557302 TSSC4Q9Y5U2 329 aaPredicted RBP10.68□□□□□ -0.7
SHMT2-228ENST00000557302 WSB1Q9Y6I7 421 aa10.68□□□□□ -0.7
SHMT2-228ENST00000557302 V9GYH0 126 aa10.68□□□□□ -0.7
SHMT2-228ENST00000557302 TET2Q6N021 2002 aaPredicted RBP10.68□□□□□ -0.7
SHMT2-228ENST00000557302 WNK1Q9H4A3 2382 aa10.68□□□□□ -0.7
SHMT2-228ENST00000557302 TRAV41A0A0B4J266 112 aa10.67□□□□□ -0.7
SHMT2-228ENST00000557302 A0A1W2PRX2 142 aa10.67□□□□□ -0.7
SHMT2-228ENST00000557302 CNIH1O95406 144 aa10.67□□□□□ -0.7
SHMT2-228ENST00000557302 HRASP01112 189 aa10.67□□□□□ -0.7
SHMT2-228ENST00000557302 AKAIN1P0CW23 69 aa10.67□□□□□ -0.7
SHMT2-228ENST00000557302 SAA1P0DJI8 122 aaPredicted RBP10.67□□□□□ -0.7
SHMT2-228ENST00000557302 PGAM2P15259 253 aa10.67□□□□□ -0.7
SHMT2-228ENST00000557302 PTBP1P26599 531 aaKnown RBP eCLIP10.67□□□□□ -0.7
SHMT2-228ENST00000557302 GNB1P62873 340 aa10.67□□□□□ -0.7
SHMT2-228ENST00000557302 CFHR3Q02985 330 aa10.67□□□□□ -0.7
SHMT2-228ENST00000557302 FXYD3Q14802 87 aa10.67□□□□□ -0.7
SHMT2-228ENST00000557302 ECSCRQ19T08 205 aa10.67□□□□□ -0.7
SHMT2-228ENST00000557302 SCGB2B2Q4G0G5 96 aa10.67□□□□□ -0.7
SHMT2-228ENST00000557302 PHLDA2Q53GA4 152 aa10.67□□□□□ -0.7
SHMT2-228ENST00000557302 LHFPL1Q86WI0 220 aa10.67□□□□□ -0.7
SHMT2-228ENST00000557302 CD300LFQ8TDQ1 290 aa10.67□□□□□ -0.7
SHMT2-228ENST00000557302 ARPC1AQ92747 370 aa10.67□□□□□ -0.7
SHMT2-228ENST00000557302 RSRP1Q9BUV0 290 aa10.67□□□□□ -0.7
SHMT2-228ENST00000557302 FBXO7Q9Y3I1 522 aa10.67□□□□□ -0.7
SHMT2-228ENST00000557302 VWFP04275 2813 aa10.67□□□□□ -0.7
SHMT2-228ENST00000557302 PKD1L1Q8TDX9 2849 aa10.67□□□□□ -0.7
SHMT2-228ENST00000557302 ANKRD20A5PA0PJZ0 165 aa10.66□□□□□ -0.7
SHMT2-228ENST00000557302 ADARB2-AS1A8MUL3 147 aa10.66□□□□□ -0.7
SHMT2-228ENST00000557302 DISC1C4P0D8 188 aa10.66□□□□□ -0.7
SHMT2-228ENST00000557302 G3V318 75 aa10.66□□□□□ -0.7
SHMT2-228ENST00000557302 CREBL2O60519 120 aaPredicted RBP10.66□□□□□ -0.7
SHMT2-228ENST00000557302 RAMP3O60896 148 aa10.66□□□□□ -0.7
SHMT2-228ENST00000557302 TSPAN15O95858 294 aa10.66□□□□□ -0.7
SHMT2-228ENST00000557302 IGHG4P01861 327 aa10.66□□□□□ -0.7
SHMT2-228ENST00000557302 ELANEP08246 267 aa10.66□□□□□ -0.7
SHMT2-228ENST00000557302 ETV6P41212 452 aa10.66□□□□□ -0.7
SHMT2-228ENST00000557302 CRIP2P52943 208 aaPredicted RBP10.66□□□□□ -0.7
SHMT2-228ENST00000557302 PPP5CP53041 499 aa10.66□□□□□ -0.7
SHMT2-228ENST00000557302 TMEM267Q0VDI3 215 aaPredicted RBP10.66□□□□□ -0.7
SHMT2-228ENST00000557302 PJVKQ0ZLH3 352 aa10.66□□□□□ -0.7
SHMT2-228ENST00000557302 FOXE3Q13461 319 aa10.66□□□□□ -0.7
SHMT2-228ENST00000557302 ZNF79Q15937 498 aa10.66□□□□□ -0.7
SHMT2-228ENST00000557302 CXorf66Q5JRM2 361 aaPredicted RBP10.66□□□□□ -0.7
SHMT2-228ENST00000557302 FAAP20Q6NZ36 180 aa10.66□□□□□ -0.7
SHMT2-228ENST00000557302 TREML4Q6UXN2 200 aa10.66□□□□□ -0.7
SHMT2-228ENST00000557302 IDO2Q6ZQW0 420 aa10.66□□□□□ -0.7
SHMT2-228ENST00000557302 Q8N402 240 aa10.66□□□□□ -0.7
SHMT2-228ENST00000557302 OR4C16Q8NGL9 310 aa10.66□□□□□ -0.7
SHMT2-228ENST00000557302 TERB2Q8NHR7 220 aa10.66□□□□□ -0.7
SHMT2-228ENST00000557302 GRPEL2Q8TAA5 225 aa10.66□□□□□ -0.7
SHMT2-228ENST00000557302 VSTM2AQ8TAG5 236 aa10.66□□□□□ -0.7
SHMT2-228ENST00000557302 RHOVQ96L33 236 aa10.66□□□□□ -0.7
SHMT2-228ENST00000557302 AIFM2Q9BRQ8 373 aa10.66□□□□□ -0.7
SHMT2-228ENST00000557302 THAP7Q9BT49 309 aaPredicted RBP10.66□□□□□ -0.7
SHMT2-228ENST00000557302 FAM103A1Q9BTL3 118 aaKnown RBP10.66□□□□□ -0.7
SHMT2-228ENST00000557302 PLXNB1O43157 2135 aa10.66□□□□□ -0.7
SHMT2-228ENST00000557302 ARPC1BO15143 372 aaKnown RBP10.65□□□□□ -0.7
SHMT2-228ENST00000557302 HPRT1P00492 218 aa10.65□□□□□ -0.7
SHMT2-228ENST00000557302 ZNF735P0CB33 412 aa10.65□□□□□ -0.7
SHMT2-228ENST00000557302 EGR2P11161 476 aaPredicted RBP10.65□□□□□ -0.7
SHMT2-228ENST00000557302 F2RP25116 425 aa10.65□□□□□ -0.7
SHMT2-228ENST00000557302 PPIFP30405 207 aaKnown RBP10.65□□□□□ -0.7
SHMT2-228ENST00000557302 RPL23AP62750 156 aaKnown RBP10.65□□□□□ -0.7
SHMT2-228ENST00000557302 PRSS8Q16651 343 aa10.65□□□□□ -0.7
SHMT2-228ENST00000557302 MMD2Q8IY49 270 aa10.65□□□□□ -0.7
SHMT2-228ENST00000557302 VKORC1L1Q8N0U8 176 aa10.65□□□□□ -0.7
SHMT2-228ENST00000557302 TCTEX1D1Q8N7M0 179 aa10.65□□□□□ -0.7
SHMT2-228ENST00000557302 MINDY2Q8NBR6 621 aa10.65□□□□□ -0.7
SHMT2-228ENST00000557302 OR4F17Q8NGA8 305 aa10.65□□□□□ -0.7
SHMT2-228ENST00000557302 R3HDM4Q96D70 268 aa10.65□□□□□ -0.7
SHMT2-228ENST00000557302 ZNF486Q96H40 463 aaPredicted RBP10.65□□□□□ -0.7
SHMT2-228ENST00000557302 OR4F4Q96R69 305 aa10.65□□□□□ -0.7
SHMT2-228ENST00000557302 PLEKHA2Q9HB19 425 aa10.65□□□□□ -0.7
SHMT2-228ENST00000557302 SLC2A9Q9NRM0 540 aa10.65□□□□□ -0.7
SHMT2-228ENST00000557302 ZFP57Q9NU63 452 aa10.65□□□□□ -0.7
SHMT2-228ENST00000557302 NUBP2Q9Y5Y2 271 aa10.65□□□□□ -0.7
SHMT2-228ENST00000557302 ACTL6BO94805 426 aa10.64□□□□□ -0.71
SHMT2-228ENST00000557302 KBTBD11O94819 623 aa10.64□□□□□ -0.71
SHMT2-228ENST00000557302 OR2A4O95047 310 aa10.64□□□□□ -0.71
SHMT2-228ENST00000557302 S1PR2O95136 353 aa10.64□□□□□ -0.71
SHMT2-228ENST00000557302 NQO2P16083 231 aa10.64□□□□□ -0.71
SHMT2-228ENST00000557302 TAS2R31P59538 309 aa10.64□□□□□ -0.71
SHMT2-228ENST00000557302 AP3S2P59780 193 aa10.64□□□□□ -0.71
SHMT2-228ENST00000557302 SSBP2P81877 361 aaPredicted RBP10.64□□□□□ -0.71
SHMT2-228ENST00000557302 TNXAQ16473 311 aa10.64□□□□□ -0.71
SHMT2-228ENST00000557302 MRGPRG-AS1Q2M3A8 158 aa10.64□□□□□ -0.71
SHMT2-228ENST00000557302 AKIRIN2Q53H80 203 aa10.64□□□□□ -0.71
SHMT2-228ENST00000557302 C19orf54Q5BKX5 351 aa10.64□□□□□ -0.71
SHMT2-228ENST00000557302 TMEM65Q6PI78 240 aa10.64□□□□□ -0.71
SHMT2-228ENST00000557302 UNQ5815/PRO19632Q6UWF5 114 aa10.64□□□□□ -0.71
SHMT2-228ENST00000557302 LCNL1Q6ZST4 164 aa10.64□□□□□ -0.71
SHMT2-228ENST00000557302 SSX9Q7RTT3 188 aa10.64□□□□□ -0.71
SHMT2-228ENST00000557302 TBC1D26Q86UD7 250 aa10.64□□□□□ -0.71
SHMT2-228ENST00000557302 PUSL1Q8N0Z8 303 aaKnown RBP10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms