RNA–Protein interactions for RNA: ENST00000556718.1

PRPF39-210, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 499 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-210ENST00000556718 ZNF593O00488 134 aaPredicted RBP2.76□□□□□ -1.97
PRPF39-210ENST00000556718 RRP8O43159 456 aaKnown RBP2.76□□□□□ -1.97
PRPF39-210ENST00000556718 RBFOX2O43251 390 aaKnown RBP eCLIP2.76□□□□□ -1.97
PRPF39-210ENST00000556718 FGF16O43320 207 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 ARL6IP5O75915 188 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 NDUFB6O95139 128 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 SOD1P00441 154 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 IFNA21P01568 189 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 TRBV12-3P01733 135 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 IGHV3-11P01762 117 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 HLA-DQA1P01909 254 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 IFNA6P05013 189 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 RD3LP0DJH9 198 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 CD79AP11912 226 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 CXCR1P25024 350 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 TEAD1P28347 426 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 CD200P41217 278 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 TTPAP49638 278 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 TAS2R43P59537 309 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 TAS2R31P59538 309 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 RPL19P84098 196 aaKnown RBP2.76□□□□□ -1.97
PRPF39-210ENST00000556718 H3F3AP84243 136 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 CDK6Q00534 326 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 TSPAN31Q12999 210 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 SKP2Q13309 424 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 EIF4EBP2Q13542 120 aaPredicted RBP2.76□□□□□ -1.97
PRPF39-210ENST00000556718 JOSD1Q15040 202 aaPredicted RBP2.76□□□□□ -1.97
PRPF39-210ENST00000556718 PAFAH1B3Q15102 231 aaKnown RBP2.76□□□□□ -1.97
PRPF39-210ENST00000556718 PTGES3Q15185 160 aaKnown RBP2.76□□□□□ -1.97
PRPF39-210ENST00000556718 SURF2Q15527 256 aaPredicted RBP2.76□□□□□ -1.97
PRPF39-210ENST00000556718 ZBTB6Q15916 424 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 IQCJQ1A5X6 159 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 TMEM241Q24JQ0 296 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 GOLGA7BQ2TAP0 167 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 PYCR3Q53H96 274 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 APOBEC3HQ6NTF7 200 aaKnown RBP2.76□□□□□ -1.97
PRPF39-210ENST00000556718 GUSBP11Q6P575 273 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 CD200R1LQ6Q8B3 271 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 SMARCD3Q6STE5 483 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 TMEM205Q6UW68 189 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 SCIMPQ6UWF3 145 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 IGFL2Q6UWQ7 119 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 ALKAL1Q6UXT8 129 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 ZFP2Q6ZN57 461 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 NTM-AS1Q6ZSK4 140 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 SMIM5Q71RC9 77 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 TRAPPC5Q8IUR0 188 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 OR4K2Q8NGD2 314 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 OR5M1Q8NGP8 315 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 OR13C8Q8NGS7 320 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 OR6N1Q8NGY5 312 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 JOSD2Q8TAC2 188 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 UBA3Q8TBC4 463 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 SFXN5Q8TD22 340 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 DNAJB3Q8WWF6 145 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 S100A16Q96FQ6 103 aaKnown RBP2.76□□□□□ -1.97
PRPF39-210ENST00000556718 BTF3L4Q96K17 158 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 ZFP3Q96NJ6 502 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 GGTLC1Q9BX51 225 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 SUCNR1Q9BXA5 334 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 TSSK6Q9BXA6 273 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 SAMD10Q9BYL1 202 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 FGF23Q9GZV9 251 aaPredicted RBP2.76□□□□□ -1.97
PRPF39-210ENST00000556718 COA1Q9GZY4 146 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 PLEKHA1Q9HB21 404 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 TAS2R13Q9NYV9 303 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 OR52A1Q9UKL2 312 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 KLK12Q9UKR0 248 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 FARSAQ9Y285 508 aaKnown RBP2.76□□□□□ -1.97
PRPF39-210ENST00000556718 SIGLEC7Q9Y286 467 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 ZFP30Q9Y2G7 519 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 LSM2Q9Y333 95 aaKnown RBP2.76□□□□□ -1.97
PRPF39-210ENST00000556718 TSSC4Q9Y5U2 329 aaPredicted RBP2.76□□□□□ -1.97
PRPF39-210ENST00000556718 BCORQ6W2J9 1755 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 C5P01031 1676 aa2.76□□□□□ -1.97
PRPF39-210ENST00000556718 COL16A1Q07092 1604 aaPredicted RBP2.75□□□□□ -1.97
PRPF39-210ENST00000556718 MYH9P35579 1960 aaKnown RBP2.75□□□□□ -1.97
PRPF39-210ENST00000556718 TRAV8-6A0A0B4J262 113 aa2.75□□□□□ -1.97
PRPF39-210ENST00000556718 B4DEV8 164 aa2.75□□□□□ -1.97
PRPF39-210ENST00000556718 E7EQ34 232 aa2.75□□□□□ -1.97
PRPF39-210ENST00000556718 K7ERU9 68 aa2.75□□□□□ -1.97
PRPF39-210ENST00000556718 M0R1B8 84 aa2.75□□□□□ -1.97
PRPF39-210ENST00000556718 M0R1X1 148 aa2.75□□□□□ -1.97
PRPF39-210ENST00000556718 FAAHO00519 579 aa2.75□□□□□ -1.97
PRPF39-210ENST00000556718 HMGB3O15347 200 aaKnown RBP2.75□□□□□ -1.97
PRPF39-210ENST00000556718 SOCS1O15524 211 aa2.75□□□□□ -1.97
PRPF39-210ENST00000556718 SNAI2O43623 268 aa2.75□□□□□ -1.97
PRPF39-210ENST00000556718 TCF21O43680 179 aa2.75□□□□□ -1.97
PRPF39-210ENST00000556718 ENSAO43768 121 aaKnown RBP2.75□□□□□ -1.97
PRPF39-210ENST00000556718 CST4P01036 141 aa2.75□□□□□ -1.97
PRPF39-210ENST00000556718 PPBPP02775 128 aa2.75□□□□□ -1.97
PRPF39-210ENST00000556718 SFTA3P0C7M3 94 aa2.75□□□□□ -1.97
PRPF39-210ENST00000556718 PET100P0DJ07 73 aa2.75□□□□□ -1.97
PRPF39-210ENST00000556718 GIMD1P0DJR0 217 aa2.75□□□□□ -1.97
PRPF39-210ENST00000556718 LIPCP11150 499 aa2.75□□□□□ -1.97
PRPF39-210ENST00000556718 GTF2F2P13984 249 aa2.75□□□□□ -1.97
PRPF39-210ENST00000556718 LOXP28300 417 aaPredicted RBP2.75□□□□□ -1.97
PRPF39-210ENST00000556718 HSD11B1P28845 292 aa2.75□□□□□ -1.97
PRPF39-210ENST00000556718 SNCAP37840 140 aa2.75□□□□□ -1.97
PRPF39-210ENST00000556718 GALR1P47211 349 aa2.75□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms