RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 A0A1B0GVG6 124 aa7.95□□□□□ -1.14
CCDC88C-206ENST00000553437 WI2-2373I1.2A0A1W2PRP0 233 aa7.95□□□□□ -1.14
CCDC88C-206ENST00000553437 MEIS3P1A6NDR6 274 aa7.95□□□□□ -1.14
CCDC88C-206ENST00000553437 FCGR3BO75015 233 aa7.95□□□□□ -1.14
CCDC88C-206ENST00000553437 GABARAPO95166 117 aa7.95□□□□□ -1.14
CCDC88C-206ENST00000553437 EIF4EP06730 217 aaKnown RBP7.95□□□□□ -1.14
CCDC88C-206ENST00000553437 RAB25P57735 213 aa7.95□□□□□ -1.14
CCDC88C-206ENST00000553437 ARPC4P59998 168 aa7.95□□□□□ -1.14
CCDC88C-206ENST00000553437 CBX3Q13185 183 aa7.95□□□□□ -1.14
CCDC88C-206ENST00000553437 MSMO1Q15800 293 aa7.95□□□□□ -1.14
CCDC88C-206ENST00000553437 PRSS8Q16651 343 aa7.95□□□□□ -1.14
CCDC88C-206ENST00000553437 VMA21Q3ZAQ7 101 aa7.95□□□□□ -1.14
CCDC88C-206ENST00000553437 TMEM69Q5SWH9 247 aa7.95□□□□□ -1.14
CCDC88C-206ENST00000553437 PYHIN1Q6K0P9 492 aa7.95□□□□□ -1.14
CCDC88C-206ENST00000553437 MFSD4AQ8N468 514 aa7.95□□□□□ -1.14
CCDC88C-206ENST00000553437 OR5AP2Q8NGF4 316 aa7.95□□□□□ -1.14
CCDC88C-206ENST00000553437 OSR1Q8TAX0 266 aaPredicted RBP7.95□□□□□ -1.14
CCDC88C-206ENST00000553437 GIMAP1Q8WWP7 306 aa7.95□□□□□ -1.14
CCDC88C-206ENST00000553437 RHOVQ96L33 236 aa7.95□□□□□ -1.14
CCDC88C-206ENST00000553437 MS4A10Q96PG2 267 aa7.95□□□□□ -1.14
CCDC88C-206ENST00000553437 GPHA2Q96T91 129 aa7.95□□□□□ -1.14
CCDC88C-206ENST00000553437 HSD17B10Q99714 261 aaKnown RBP7.95□□□□□ -1.14
CCDC88C-206ENST00000553437 PALMDQ9NP74 551 aa7.95□□□□□ -1.14
CCDC88C-206ENST00000553437 CCL28Q9NRJ3 127 aa7.95□□□□□ -1.14
CCDC88C-206ENST00000553437 DNAH9Q9NYC9 4486 aa7.94□□□□□ -1.14
CCDC88C-206ENST00000553437 CNIH1O95406 144 aa7.94□□□□□ -1.14
CCDC88C-206ENST00000553437 BRI3O95415 125 aa7.94□□□□□ -1.14
CCDC88C-206ENST00000553437 PPYP01298 95 aa7.94□□□□□ -1.14
CCDC88C-206ENST00000553437 LGALS1P09382 135 aaKnown RBP7.94□□□□□ -1.14
CCDC88C-206ENST00000553437 OR8U8P0C7N1 319 aa7.94□□□□□ -1.14
CCDC88C-206ENST00000553437 SAA1P0DJI8 122 aaPredicted RBP7.94□□□□□ -1.14
CCDC88C-206ENST00000553437 NAT1P18440 290 aa7.94□□□□□ -1.14
CCDC88C-206ENST00000553437 ZNF616Q08AN1 781 aa7.94□□□□□ -1.14
CCDC88C-206ENST00000553437 CDK10Q15131 360 aa7.94□□□□□ -1.14
CCDC88C-206ENST00000553437 ZNF66Q6ZN08 573 aa7.94□□□□□ -1.14
CCDC88C-206ENST00000553437 IDO2Q6ZQW0 420 aa7.94□□□□□ -1.14
CCDC88C-206ENST00000553437 LINC00299Q6ZSB3 139 aa7.94□□□□□ -1.14
CCDC88C-206ENST00000553437 KCTD9Q7L273 389 aa7.94□□□□□ -1.14
CCDC88C-206ENST00000553437 POC5Q8NA72 575 aa7.94□□□□□ -1.14
CCDC88C-206ENST00000553437 OR5T1Q8NG75 326 aa7.94□□□□□ -1.14
CCDC88C-206ENST00000553437 TMEM68Q96MH6 324 aa7.94□□□□□ -1.14
CCDC88C-206ENST00000553437 CMTM3Q96MX0 182 aa7.94□□□□□ -1.14
CCDC88C-206ENST00000553437 SLA2Q9H6Q3 261 aa7.94□□□□□ -1.14
CCDC88C-206ENST00000553437 TAS2R8Q9NYW2 309 aa7.94□□□□□ -1.14
CCDC88C-206ENST00000553437 COMMD3Q9UBI1 195 aa7.94□□□□□ -1.14
CCDC88C-206ENST00000553437 PRELID3BQ9Y3B1 194 aa7.94□□□□□ -1.14
CCDC88C-206ENST00000553437 IGHV4OR15-8A0A075B7B6 117 aa7.93□□□□□ -1.14
CCDC88C-206ENST00000553437 A0A087WW49 117 aa7.93□□□□□ -1.14
CCDC88C-206ENST00000553437 MSGN1A6NI15 193 aa7.93□□□□□ -1.14
CCDC88C-206ENST00000553437 H3BUA1 57 aa7.93□□□□□ -1.14
CCDC88C-206ENST00000553437 IGHV3-11P01762 117 aa7.93□□□□□ -1.14
CCDC88C-206ENST00000553437 APOA1P02647 267 aa7.93□□□□□ -1.14
CCDC88C-206ENST00000553437 ZNF182P17025 639 aaPredicted RBP7.93□□□□□ -1.14
CCDC88C-206ENST00000553437 ELK1P19419 428 aa7.93□□□□□ -1.14
CCDC88C-206ENST00000553437 PRSS3P35030 304 aa7.93□□□□□ -1.14
CCDC88C-206ENST00000553437 RFX2P48378 723 aa7.93□□□□□ -1.14
CCDC88C-206ENST00000553437 RORCP51449 518 aa7.93□□□□□ -1.14
CCDC88C-206ENST00000553437 TPPP2P59282 170 aa7.93□□□□□ -1.14
CCDC88C-206ENST00000553437 OR2B11Q5JQS5 317 aa7.93□□□□□ -1.14
CCDC88C-206ENST00000553437 DHRS11Q6UWP2 260 aa7.93□□□□□ -1.14
CCDC88C-206ENST00000553437 LYSMD2Q8IV50 215 aa7.93□□□□□ -1.14
CCDC88C-206ENST00000553437 VKORC1L1Q8N0U8 176 aa7.93□□□□□ -1.14
CCDC88C-206ENST00000553437 ZBTB34Q8NCN2 500 aa7.93□□□□□ -1.14
CCDC88C-206ENST00000553437 GPX8Q8TED1 209 aa7.93□□□□□ -1.14
CCDC88C-206ENST00000553437 SECTM1Q8WVN6 248 aa7.93□□□□□ -1.14
CCDC88C-206ENST00000553437 TCTEX1D2Q8WW35 142 aa7.93□□□□□ -1.14
CCDC88C-206ENST00000553437 ACOT12Q8WYK0 555 aa7.93□□□□□ -1.14
CCDC88C-206ENST00000553437 DCUN1D4Q92564 292 aa7.93□□□□□ -1.14
CCDC88C-206ENST00000553437 DPF1Q92782 380 aa7.93□□□□□ -1.14
CCDC88C-206ENST00000553437 DLX4Q92988 240 aaPredicted RBP7.93□□□□□ -1.14
CCDC88C-206ENST00000553437 PPP1R14BQ96C90 147 aa7.93□□□□□ -1.14
CCDC88C-206ENST00000553437 ZNF430Q9H8G1 570 aaPredicted RBP7.93□□□□□ -1.14
CCDC88C-206ENST00000553437 IFT46Q9NQC8 304 aa7.93□□□□□ -1.14
CCDC88C-206ENST00000553437 MRPS7Q9Y2R9 242 aaKnown RBP7.93□□□□□ -1.14
CCDC88C-206ENST00000553437 SEC14L6B5MCN3 397 aa7.92□□□□□ -1.14
CCDC88C-206ENST00000553437 LINC01619G3V211 115 aa7.92□□□□□ -1.14
CCDC88C-206ENST00000553437 TNFSF12O43508 249 aa7.92□□□□□ -1.14
CCDC88C-206ENST00000553437 HPGDSO60760 199 aa7.92□□□□□ -1.14
CCDC88C-206ENST00000553437 RBMXL2O75526 392 aaKnown RBP7.92□□□□□ -1.14
CCDC88C-206ENST00000553437 PMP2P02689 132 aa7.92□□□□□ -1.14
CCDC88C-206ENST00000553437 TRGV3P03979 118 aa7.92□□□□□ -1.14
CCDC88C-206ENST00000553437 HSPB1P04792 205 aaKnown RBP7.92□□□□□ -1.14
CCDC88C-206ENST00000553437 CD40LGP29965 261 aa7.92□□□□□ -1.14
CCDC88C-206ENST00000553437 SLURP1P55000 103 aa7.92□□□□□ -1.14
CCDC88C-206ENST00000553437 FXYD4P59646 89 aa7.92□□□□□ -1.14
CCDC88C-206ENST00000553437 DYRK1AQ13627 763 aa7.92□□□□□ -1.14
CCDC88C-206ENST00000553437 TNXAQ16473 311 aa7.92□□□□□ -1.14
CCDC88C-206ENST00000553437 C9orf66Q5T8R8 295 aa7.92□□□□□ -1.14
CCDC88C-206ENST00000553437 ZNF818PQ6ZRF7 136 aa7.92□□□□□ -1.14
CCDC88C-206ENST00000553437 PUSL1Q8N0Z8 303 aaKnown RBP7.92□□□□□ -1.14
CCDC88C-206ENST00000553437 OR4S2Q8NH73 311 aa7.92□□□□□ -1.14
CCDC88C-206ENST00000553437 SRSF12Q8WXF0 261 aaKnown RBP7.92□□□□□ -1.14
CCDC88C-206ENST00000553437 WDR12Q9GZL7 423 aaKnown RBP7.92□□□□□ -1.14
CCDC88C-206ENST00000553437 TINAGL1Q9GZM7 467 aaPredicted RBP7.92□□□□□ -1.14
CCDC88C-206ENST00000553437 SLC5A7Q9GZV3 580 aa7.92□□□□□ -1.14
CCDC88C-206ENST00000553437 A0A1B0GW64 132 aa7.91□□□□□ -1.14
CCDC88C-206ENST00000553437 OVOL1O14753 267 aa7.91□□□□□ -1.14
CCDC88C-206ENST00000553437 RBFOX2O43251 390 aaKnown RBP eCLIP7.91□□□□□ -1.14
CCDC88C-206ENST00000553437 RAMP3O60896 148 aa7.91□□□□□ -1.14
CCDC88C-206ENST00000553437 OR2A4O95047 310 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 193.8 ms