RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 KCNK1O00180 336 aa3.26□□□□□ -1.89
LIMA1-210ENST00000552045 GSTZ1O43708 216 aaPredicted RBP3.26□□□□□ -1.89
LIMA1-210ENST00000552045 SYNGR2O43760 224 aa3.26□□□□□ -1.89
LIMA1-210ENST00000552045 IGHV3-30-3P0DP02 117 aa3.26□□□□□ -1.89
LIMA1-210ENST00000552045 TMEM33P57088 247 aa3.26□□□□□ -1.89
LIMA1-210ENST00000552045 MRPS15P82914 257 aaKnown RBP3.26□□□□□ -1.89
LIMA1-210ENST00000552045 FADDQ13158 208 aa3.26□□□□□ -1.89
LIMA1-210ENST00000552045 LRRC75BQ2VPJ9 315 aa3.26□□□□□ -1.89
LIMA1-210ENST00000552045 TMEM176BQ3YBM2 270 aaPredicted RBP3.26□□□□□ -1.89
LIMA1-210ENST00000552045 SYPL2Q5VXT5 272 aa3.26□□□□□ -1.89
LIMA1-210ENST00000552045 C8orf74Q6P047 294 aa3.26□□□□□ -1.89
LIMA1-210ENST00000552045 C1orf174Q8IYL3 243 aa3.26□□□□□ -1.89
LIMA1-210ENST00000552045 LYPD1Q8N2G4 141 aa3.26□□□□□ -1.89
LIMA1-210ENST00000552045 UBL4BQ8N7F7 174 aa3.26□□□□□ -1.89
LIMA1-210ENST00000552045 ASB17Q8WXJ9 295 aa3.26□□□□□ -1.89
LIMA1-210ENST00000552045 MS4A6EQ96DS6 147 aa3.26□□□□□ -1.89
LIMA1-210ENST00000552045 SLC35G5Q96KT7 338 aa3.26□□□□□ -1.89
LIMA1-210ENST00000552045 CCDC42Q96M95 316 aa3.26□□□□□ -1.89
LIMA1-210ENST00000552045 MARF1Q9Y4F3 1742 aaKnown RBP3.26□□□□□ -1.89
LIMA1-210ENST00000552045 PLEKHH2Q8IVE3 1493 aa3.26□□□□□ -1.89
LIMA1-210ENST00000552045 PXDNQ92626 1479 aa3.26□□□□□ -1.89
LIMA1-210ENST00000552045 CACNA1GO43497 2377 aa3.26□□□□□ -1.89
LIMA1-210ENST00000552045 KIAA1107Q9UPP5 1409 aa3.26□□□□□ -1.89
LIMA1-210ENST00000552045 ADAMTSL1Q8N6G6 1762 aa3.25□□□□□ -1.89
LIMA1-210ENST00000552045 ZNF638Q14966 1978 aaKnown RBP3.25□□□□□ -1.89
LIMA1-210ENST00000552045 CHD5Q8TDI0 1954 aa3.25□□□□□ -1.89
LIMA1-210ENST00000552045 OTOFQ9HC10 1997 aa3.25□□□□□ -1.89
LIMA1-210ENST00000552045 ABCA3Q99758 1704 aa3.25□□□□□ -1.89
LIMA1-210ENST00000552045 NWD2Q9ULI1 1742 aa3.25□□□□□ -1.89
LIMA1-210ENST00000552045 CTTNBP2Q8WZ74 1663 aa3.25□□□□□ -1.89
LIMA1-210ENST00000552045 MT-CO2P00403 227 aa3.25□□□□□ -1.89
LIMA1-210ENST00000552045 IGKV1-17P01599 117 aa3.25□□□□□ -1.89
LIMA1-210ENST00000552045 CRYGDP07320 174 aa3.25□□□□□ -1.89
LIMA1-210ENST00000552045 RPS17P08708 135 aaKnown RBP3.25□□□□□ -1.89
LIMA1-210ENST00000552045 ATP6V0CP27449 155 aa3.25□□□□□ -1.89
LIMA1-210ENST00000552045 FAM78BQ5VT40 261 aa3.25□□□□□ -1.89
LIMA1-210ENST00000552045 NOXRED1Q6NXP6 359 aa3.25□□□□□ -1.89
LIMA1-210ENST00000552045 SDIM1Q6ZPB5 146 aa3.25□□□□□ -1.89
LIMA1-210ENST00000552045 BAP18Q8IXM2 172 aa3.25□□□□□ -1.89
LIMA1-210ENST00000552045 RAD51AP1Q96B01 352 aa3.25□□□□□ -1.89
LIMA1-210ENST00000552045 TMA16Q96EY4 203 aaKnown RBP3.25□□□□□ -1.89
LIMA1-210ENST00000552045 UPK3BQ9BT76 320 aa3.25□□□□□ -1.89
LIMA1-210ENST00000552045 OR51I2Q9H344 312 aa3.25□□□□□ -1.89
LIMA1-210ENST00000552045 VPREB3Q9UKI3 123 aa3.25□□□□□ -1.89
LIMA1-210ENST00000552045 HHLA2Q9UM44 414 aa3.25□□□□□ -1.89
LIMA1-210ENST00000552045 LAMC1P11047 1609 aa3.25□□□□□ -1.89
LIMA1-210ENST00000552045 CCDC144AA2RUR9 1427 aa3.25□□□□□ -1.89
LIMA1-210ENST00000552045 SHANK1Q9Y566 2161 aa3.25□□□□□ -1.89
LIMA1-210ENST00000552045 ARHGEF10O15013 1369 aa3.25□□□□□ -1.89
LIMA1-210ENST00000552045 COL6A3P12111 3177 aa3.24□□□□□ -1.89
LIMA1-210ENST00000552045 PIK3C2BO00750 1634 aa3.24□□□□□ -1.89
LIMA1-210ENST00000552045 IGKV1D-17A0A075B6S4 117 aa3.24□□□□□ -1.89
LIMA1-210ENST00000552045 TMED7-TICAM2A0A0A6YYA0 188 aa3.24□□□□□ -1.89
LIMA1-210ENST00000552045 IFNA16P05015 189 aa3.24□□□□□ -1.89
LIMA1-210ENST00000552045 ZNF22P17026 224 aaPredicted RBP3.24□□□□□ -1.89
LIMA1-210ENST00000552045 CTAG1AP78358 180 aa3.24□□□□□ -1.89
LIMA1-210ENST00000552045 EMX1Q04741 257 aaPredicted RBP3.24□□□□□ -1.89
LIMA1-210ENST00000552045 BAMBIQ13145 260 aa3.24□□□□□ -1.89
LIMA1-210ENST00000552045 UAP1Q16222 522 aaPredicted RBP3.24□□□□□ -1.89
LIMA1-210ENST00000552045 PYDC2Q56P42 97 aa3.24□□□□□ -1.89
LIMA1-210ENST00000552045 SFXN4Q6P4A7 337 aa3.24□□□□□ -1.89
LIMA1-210ENST00000552045 CPNE2Q96FN4 548 aaPredicted RBP3.24□□□□□ -1.89
LIMA1-210ENST00000552045 UNC79Q9P2D8 2635 aa3.24□□□□□ -1.89
LIMA1-210ENST00000552045 COL18A1P39060 1754 aa3.24□□□□□ -1.89
LIMA1-210ENST00000552045 TECPR2O15040 1411 aa3.24□□□□□ -1.89
LIMA1-210ENST00000552045 PLCH1Q4KWH8 1693 aa3.24□□□□□ -1.89
LIMA1-210ENST00000552045 PREX2Q70Z35 1606 aa3.23□□□□□ -1.89
LIMA1-210ENST00000552045 RGPD3A6NKT7 1758 aaPredicted RBP3.23□□□□□ -1.89
LIMA1-210ENST00000552045 RGPD4Q7Z3J3 1758 aa3.23□□□□□ -1.89
LIMA1-210ENST00000552045 PSCAO43653 123 aa3.23□□□□□ -1.89
LIMA1-210ENST00000552045 RPP14O95059 124 aaKnown RBP3.23□□□□□ -1.89
LIMA1-210ENST00000552045 RAP1GDS1P52306 607 aa3.23□□□□□ -1.89
LIMA1-210ENST00000552045 TAS2R45P59539 299 aa3.23□□□□□ -1.89
LIMA1-210ENST00000552045 RAB5BP61020 215 aa3.23□□□□□ -1.89
LIMA1-210ENST00000552045 CACNA1SQ13698 1873 aa3.23□□□□□ -1.89
LIMA1-210ENST00000552045 BATFQ16520 125 aa3.23□□□□□ -1.89
LIMA1-210ENST00000552045 C1orf194Q5T5A4 169 aa3.23□□□□□ -1.89
LIMA1-210ENST00000552045 SBSNQ6UWP8 590 aa3.23□□□□□ -1.89
LIMA1-210ENST00000552045 ZNF550Q7Z398 422 aa3.23□□□□□ -1.89
LIMA1-210ENST00000552045 OR10P1Q8NGE3 313 aa3.23□□□□□ -1.89
LIMA1-210ENST00000552045 OR2D3Q8NGH3 330 aa3.23□□□□□ -1.89
LIMA1-210ENST00000552045 MUC7Q8TAX7 377 aa3.23□□□□□ -1.89
LIMA1-210ENST00000552045 OR8B2Q96RD0 313 aa3.23□□□□□ -1.89
LIMA1-210ENST00000552045 TM2D3Q9BRN9 247 aa3.23□□□□□ -1.89
LIMA1-210ENST00000552045 HIGD2AQ9BW72 106 aa3.23□□□□□ -1.89
LIMA1-210ENST00000552045 OR51V1Q9H2C8 321 aa3.23□□□□□ -1.89
LIMA1-210ENST00000552045 LRRC19Q9H756 370 aa3.23□□□□□ -1.89
LIMA1-210ENST00000552045 LSM5Q9Y4Y9 91 aaKnown RBP3.23□□□□□ -1.89
LIMA1-210ENST00000552045 LCTP09848 1927 aa3.23□□□□□ -1.89
LIMA1-210ENST00000552045 TRPM3Q9HCF6 1732 aaPredicted RBP3.22□□□□□ -1.89
LIMA1-210ENST00000552045 ARHGAP31Q2M1Z3 1444 aa3.22□□□□□ -1.89
LIMA1-210ENST00000552045 TNS3Q68CZ2 1445 aa3.22□□□□□ -1.89
LIMA1-210ENST00000552045 IGKV2-24A0A0C4DH68 120 aa3.22□□□□□ -1.89
LIMA1-210ENST00000552045 A0A1W2PNN7 141 aa3.22□□□□□ -1.89
LIMA1-210ENST00000552045 TMEM210A6NLX4 147 aa3.22□□□□□ -1.89
LIMA1-210ENST00000552045 TNNC2P02585 160 aa3.22□□□□□ -1.89
LIMA1-210ENST00000552045 ESDP10768 282 aa3.22□□□□□ -1.89
LIMA1-210ENST00000552045 UCHL3P15374 230 aa3.22□□□□□ -1.89
LIMA1-210ENST00000552045 TSPEAR-AS2P59090 65 aa3.22□□□□□ -1.89
LIMA1-210ENST00000552045 BTN3A2P78410 334 aa3.22□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms