RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 CCL13Q99616 98 aa11.36□□□□□ -0.59
RTN3-210ENST00000540798 RARRES2Q99969 163 aa11.36□□□□□ -0.59
RTN3-210ENST00000540798 SH3BGRL2Q9UJC5 107 aa11.36□□□□□ -0.59
RTN3-210ENST00000540798 HCFC1P51610 2035 aa11.36□□□□□ -0.59
RTN3-210ENST00000540798 C5orf52A6NGY3 159 aa11.36□□□□□ -0.59
RTN3-210ENST00000540798 M0R1X1 148 aa11.36□□□□□ -0.59
RTN3-210ENST00000540798 HBE1P02100 147 aa11.36□□□□□ -0.59
RTN3-210ENST00000540798 FAM87AP0C7U9 286 aa11.36□□□□□ -0.59
RTN3-210ENST00000540798 MDKP21741 143 aaPredicted RBP11.36□□□□□ -0.59
RTN3-210ENST00000540798 PAX6P26367 422 aa11.36□□□□□ -0.59
RTN3-210ENST00000540798 FAM216BQ8N7L0 139 aa11.36□□□□□ -0.59
RTN3-210ENST00000540798 RND1Q92730 232 aa11.36□□□□□ -0.59
RTN3-210ENST00000540798 TAF15Q92804 592 aaKnown RBP eCLIP11.36□□□□□ -0.59
RTN3-210ENST00000540798 ZDHHC16Q969W1 377 aa11.36□□□□□ -0.59
RTN3-210ENST00000540798 WFIKKN1Q96NZ8 548 aa11.36□□□□□ -0.59
RTN3-210ENST00000540798 FCGR3BO75015 233 aa11.35□□□□□ -0.59
RTN3-210ENST00000540798 IRF2P14316 349 aa11.35□□□□□ -0.59
RTN3-210ENST00000540798 ZNF506Q5JVG8 444 aa11.35□□□□□ -0.59
RTN3-210ENST00000540798 ETV3LQ6ZN32 361 aa11.35□□□□□ -0.59
RTN3-210ENST00000540798 OR52E5Q8NH55 327 aa11.35□□□□□ -0.59
RTN3-210ENST00000540798 PLPPR2Q96GM1 343 aa11.35□□□□□ -0.59
RTN3-210ENST00000540798 RPRMQ9NS64 109 aa11.35□□□□□ -0.59
RTN3-210ENST00000540798 IDI2-AS1Q9NZ38 188 aa11.35□□□□□ -0.59
RTN3-210ENST00000540798 NBEAQ8NFP9 2946 aa11.35□□□□□ -0.59
RTN3-210ENST00000540798 DIDO1Q9BTC0 2240 aaKnown RBP11.35□□□□□ -0.59
RTN3-210ENST00000540798 NCOR2Q9Y618 2525 aa11.35□□□□□ -0.59
RTN3-210ENST00000540798 TNFRSF13BO14836 293 aaPredicted RBP11.35□□□□□ -0.59
RTN3-210ENST00000540798 GNB2P62879 340 aa11.35□□□□□ -0.59
RTN3-210ENST00000540798 ZNF726P1Q15940 193 aa11.35□□□□□ -0.59
RTN3-210ENST00000540798 SLC25A24Q6NUK1 477 aa11.35□□□□□ -0.59
RTN3-210ENST00000540798 CLDND2Q8NHS1 167 aa11.35□□□□□ -0.59
RTN3-210ENST00000540798 ATG101Q9BSB4 218 aa11.35□□□□□ -0.59
RTN3-210ENST00000540798 QTRT1Q9BXR0 403 aaKnown RBP11.35□□□□□ -0.59
RTN3-210ENST00000540798 PRO1933Q9H354 126 aa11.35□□□□□ -0.59
RTN3-210ENST00000540798 VSIRQ9H7M9 311 aa11.35□□□□□ -0.59
RTN3-210ENST00000540798 SHISA9B4DS77 424 aa11.35□□□□□ -0.59
RTN3-210ENST00000540798 CCL8P80075 99 aa11.35□□□□□ -0.59
RTN3-210ENST00000540798 ICAM4Q14773 271 aa11.35□□□□□ -0.59
RTN3-210ENST00000540798 ZNF383Q8NA42 475 aa11.35□□□□□ -0.59
RTN3-210ENST00000540798 SAA2-SAA4A0A096LPE2 208 aa11.34□□□□□ -0.59
RTN3-210ENST00000540798 A0A1B0GV50 99 aa11.34□□□□□ -0.59
RTN3-210ENST00000540798 ARG1P05089 322 aa11.34□□□□□ -0.59
RTN3-210ENST00000540798 SAA2P0DJI9 122 aaPredicted RBP11.34□□□□□ -0.59
RTN3-210ENST00000540798 DEFB108BQ8NET1 73 aa11.34□□□□□ -0.59
RTN3-210ENST00000540798 TMEM147Q9BVK8 224 aa11.34□□□□□ -0.59
RTN3-210ENST00000540798 GGACTQ9BVM4 153 aa11.34□□□□□ -0.59
RTN3-210ENST00000540798 SCAF4O95104 1147 aaKnown RBP11.34□□□□□ -0.59
RTN3-210ENST00000540798 TMEM41BQ5BJD5 291 aa11.34□□□□□ -0.59
RTN3-210ENST00000540798 OR10A7Q8NGE5 316 aa11.34□□□□□ -0.59
RTN3-210ENST00000540798 DMRT1Q9Y5R6 373 aa11.34□□□□□ -0.59
RTN3-210ENST00000540798 PRSS47A8MTI9 375 aa11.33□□□□□ -0.6
RTN3-210ENST00000540798 C1orf196B1AJZ1 125 aa11.33□□□□□ -0.6
RTN3-210ENST00000540798 UBE2CO00762 179 aa11.33□□□□□ -0.6
RTN3-210ENST00000540798 FCN3O75636 299 aa11.33□□□□□ -0.6
RTN3-210ENST00000540798 HSPB1P04792 205 aaKnown RBP11.33□□□□□ -0.6
RTN3-210ENST00000540798 SRP19P09132 144 aaKnown RBP11.33□□□□□ -0.6
RTN3-210ENST00000540798 UCNP55089 124 aa11.33□□□□□ -0.6
RTN3-210ENST00000540798 RAB5BP61020 215 aa11.33□□□□□ -0.6
RTN3-210ENST00000540798 RELBQ01201 579 aa11.33□□□□□ -0.6
RTN3-210ENST00000540798 OR8G2PQ6IF36 304 aa11.33□□□□□ -0.6
RTN3-210ENST00000540798 ADAM5Q6NVV9 412 aa11.33□□□□□ -0.6
RTN3-210ENST00000540798 LEAP2Q969E1 77 aa11.33□□□□□ -0.6
RTN3-210ENST00000540798 PINX1Q96BK5 328 aaKnown RBP11.33□□□□□ -0.6
RTN3-210ENST00000540798 S1PR3Q99500 378 aa11.33□□□□□ -0.6
RTN3-210ENST00000540798 NEU1Q99519 415 aa11.33□□□□□ -0.6
RTN3-210ENST00000540798 RPUSD1Q9UJJ7 312 aaKnown RBP11.33□□□□□ -0.6
RTN3-210ENST00000540798 LINC00312Q9Y6C7 94 aa11.33□□□□□ -0.6
RTN3-210ENST00000540798 UBE2L5PA0A1B0GUS4 154 aa11.33□□□□□ -0.6
RTN3-210ENST00000540798 C15orf62A8K5M9 175 aa11.33□□□□□ -0.6
RTN3-210ENST00000540798 TMEM178BH3BS89 294 aa11.33□□□□□ -0.6
RTN3-210ENST00000540798 SOX15O60248 233 aa11.33□□□□□ -0.6
RTN3-210ENST00000540798 THBS3P49746 956 aa11.33□□□□□ -0.6
RTN3-210ENST00000540798 SSX7Q7RTT5 188 aa11.33□□□□□ -0.6
RTN3-210ENST00000540798 OR10G4Q8NGN3 311 aa11.33□□□□□ -0.6
RTN3-210ENST00000540798 CEP295Q9C0D2 2601 aa11.33□□□□□ -0.6
RTN3-210ENST00000540798 TET2Q6N021 2002 aaPredicted RBP11.33□□□□□ -0.6
RTN3-210ENST00000540798 TRAV38-1A0A0B4J264 116 aa11.33□□□□□ -0.6
RTN3-210ENST00000540798 NKX6-3A6NJ46 265 aa11.33□□□□□ -0.6
RTN3-210ENST00000540798 IGHV3-7P01780 117 aa11.33□□□□□ -0.6
RTN3-210ENST00000540798 RAB2AP61019 212 aa11.33□□□□□ -0.6
RTN3-210ENST00000540798 TLE1Q04724 770 aa11.33□□□□□ -0.6
RTN3-210ENST00000540798 MEF2CQ06413 473 aaPredicted RBP11.33□□□□□ -0.6
RTN3-210ENST00000540798 PMS2P11Q13670 270 aa11.33□□□□□ -0.6
RTN3-210ENST00000540798 AWAT1Q58HT5 328 aa11.33□□□□□ -0.6
RTN3-210ENST00000540798 SLC25A48Q6ZT89 311 aaKnown RBP11.33□□□□□ -0.6
RTN3-210ENST00000540798 ZNF429Q86V71 674 aa11.33□□□□□ -0.6
RTN3-210ENST00000540798 OR4S2Q8NH73 311 aa11.33□□□□□ -0.6
RTN3-210ENST00000540798 NGBQ9NPG2 151 aa11.33□□□□□ -0.6
RTN3-210ENST00000540798 PPP1R14DQ9NXH3 145 aa11.33□□□□□ -0.6
RTN3-210ENST00000540798 LOC102723971A0A1B0GUV8 181 aa11.32□□□□□ -0.6
RTN3-210ENST00000540798 MMP23AO75900 390 aa11.32□□□□□ -0.6
RTN3-210ENST00000540798 VDAC2P45880 294 aaPredicted RBP11.32□□□□□ -0.6
RTN3-210ENST00000540798 KHDC3LQ587J8 217 aa11.32□□□□□ -0.6
RTN3-210ENST00000540798 OR10P1Q8NGE3 313 aa11.32□□□□□ -0.6
RTN3-210ENST00000540798 RCC1LQ96I51 464 aaKnown RBP11.32□□□□□ -0.6
RTN3-210ENST00000540798 TUBA4BQ9H853 241 aa11.32□□□□□ -0.6
RTN3-210ENST00000540798 SMCO4Q9NRQ5 59 aa11.32□□□□□ -0.6
RTN3-210ENST00000540798 SMG1Q96Q15 3661 aaKnown RBP11.32□□□□□ -0.6
RTN3-210ENST00000540798 PIEZO2Q9H5I5 2752 aa11.32□□□□□ -0.6
RTN3-210ENST00000540798 hADV38S2A0JD32 116 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms