RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 CLDN12P56749 244 aa2.25□□□□□ -2.05
CD44-223ENST00000526553 H2BFSP57053 126 aa2.25□□□□□ -2.05
CD44-223ENST00000526553 GABARAPL2P60520 117 aa2.25□□□□□ -2.05
CD44-223ENST00000526553 CDKL4Q5MAI5 379 aa2.25□□□□□ -2.05
CD44-223ENST00000526553 XKRXQ6PP77 449 aa2.25□□□□□ -2.05
CD44-223ENST00000526553 TCF23Q7RTU1 214 aa2.25□□□□□ -2.05
CD44-223ENST00000526553 C2orf73Q8N5S3 287 aaPredicted RBP2.25□□□□□ -2.05
CD44-223ENST00000526553 TMEM156Q8N614 296 aa2.25□□□□□ -2.05
CD44-223ENST00000526553 DNAAF3Q8N9W5 541 aa2.25□□□□□ -2.05
CD44-223ENST00000526553 OR1P1Q8NH06 330 aa2.25□□□□□ -2.05
CD44-223ENST00000526553 APOBEC3DQ96AK3 386 aaPredicted RBP2.25□□□□□ -2.05
CD44-223ENST00000526553 PPCDCQ96CD2 204 aa2.25□□□□□ -2.05
CD44-223ENST00000526553 EIF5A2Q9GZV4 153 aaKnown RBP2.25□□□□□ -2.05
CD44-223ENST00000526553 GTSF1LQ9H1H1 148 aa2.25□□□□□ -2.05
CD44-223ENST00000526553 OR2D2Q9H210 308 aa2.25□□□□□ -2.05
CD44-223ENST00000526553 FGFR1OP2Q9NVK5 253 aa2.25□□□□□ -2.05
CD44-223ENST00000526553 ZNF492Q9P255 531 aa2.25□□□□□ -2.05
CD44-223ENST00000526553 LINC00527Q9UJ94 153 aa2.25□□□□□ -2.05
CD44-223ENST00000526553 USP34Q70CQ2 3546 aa2.25□□□□□ -2.05
CD44-223ENST00000526553 SPTBN2O15020 2390 aa2.24□□□□□ -2.05
CD44-223ENST00000526553 CACNA1HO95180 2353 aa2.24□□□□□ -2.05
CD44-223ENST00000526553 RALGAPA2Q2PPJ7 1873 aa2.24□□□□□ -2.05
CD44-223ENST00000526553 TRBV24-1A0A075B6N3 115 aa2.24□□□□□ -2.05
CD44-223ENST00000526553 TEX50A0A1B0GTY4 177 aa2.24□□□□□ -2.05
CD44-223ENST00000526553 LRRN3E7EW58 273 aa2.24□□□□□ -2.05
CD44-223ENST00000526553 C15orf65H3BRN8 121 aa2.24□□□□□ -2.05
CD44-223ENST00000526553 AZIN1O14977 448 aa2.24□□□□□ -2.05
CD44-223ENST00000526553 CIAO1O76071 339 aa2.24□□□□□ -2.05
CD44-223ENST00000526553 CRYBA1P05813 215 aa2.24□□□□□ -2.05
CD44-223ENST00000526553 CGB3P0DN86 165 aa2.24□□□□□ -2.05
CD44-223ENST00000526553 CGB7P0DN87 165 aa2.24□□□□□ -2.05
CD44-223ENST00000526553 CRABP2P29373 138 aa2.24□□□□□ -2.05
CD44-223ENST00000526553 MIPP30301 263 aa2.24□□□□□ -2.05
CD44-223ENST00000526553 EVI2BP34910 448 aa2.24□□□□□ -2.05
CD44-223ENST00000526553 IFNGR2P38484 337 aa2.24□□□□□ -2.05
CD44-223ENST00000526553 SULT1A2P50226 295 aa2.24□□□□□ -2.05
CD44-223ENST00000526553 SMAGPQ0VAQ4 97 aa2.24□□□□□ -2.05
CD44-223ENST00000526553 MAPK14Q16539 360 aa2.24□□□□□ -2.05
CD44-223ENST00000526553 PYCR3Q53H96 274 aa2.24□□□□□ -2.05
CD44-223ENST00000526553 OR4A5Q8NH83 315 aa2.24□□□□□ -2.05
CD44-223ENST00000526553 RNF133Q8WVZ7 376 aa2.24□□□□□ -2.05
CD44-223ENST00000526553 DYDC1Q8WWB3 177 aa2.24□□□□□ -2.05
CD44-223ENST00000526553 ASB13Q8WXK3 278 aa2.24□□□□□ -2.05
CD44-223ENST00000526553 TLCD1Q96CP7 247 aa2.24□□□□□ -2.05
CD44-223ENST00000526553 OR7D2Q96RA2 312 aa2.24□□□□□ -2.05
CD44-223ENST00000526553 EBNA1BP2Q99848 306 aaKnown RBP2.24□□□□□ -2.05
CD44-223ENST00000526553 ABCG5Q9H222 651 aa2.24□□□□□ -2.05
CD44-223ENST00000526553 MS4A6AQ9H2W1 248 aa2.24□□□□□ -2.05
CD44-223ENST00000526553 DUSP21Q9H596 190 aa2.24□□□□□ -2.05
CD44-223ENST00000526553 PARVAQ9NVD7 372 aa2.24□□□□□ -2.05
CD44-223ENST00000526553 RPUSD1Q9UJJ7 312 aaKnown RBP2.24□□□□□ -2.05
CD44-223ENST00000526553 SCN10AQ9Y5Y9 1956 aa2.23□□□□□ -2.05
CD44-223ENST00000526553 ZBED9Q6R2W3 1325 aa2.23□□□□□ -2.05
CD44-223ENST00000526553 PLXNB3Q9ULL4 1909 aa2.23□□□□□ -2.05
CD44-223ENST00000526553 WDR87Q6ZQQ6 2873 aa2.23□□□□□ -2.05
CD44-223ENST00000526553 MAP1BP46821 2468 aaKnown RBP2.23□□□□□ -2.05
CD44-223ENST00000526553 DOCK5Q9H7D0 1870 aa2.23□□□□□ -2.05
CD44-223ENST00000526553 COL4A6Q14031 1691 aa2.23□□□□□ -2.05
CD44-223ENST00000526553 SMIM23A6NLE4 172 aa2.23□□□□□ -2.05
CD44-223ENST00000526553 H3BMM0 161 aa2.23□□□□□ -2.05
CD44-223ENST00000526553 PFDN6O15212 129 aa2.23□□□□□ -2.05
CD44-223ENST00000526553 KLHL2O95198 593 aa2.23□□□□□ -2.05
CD44-223ENST00000526553 PRPS1L1P21108 318 aa2.23□□□□□ -2.05
CD44-223ENST00000526553 TGFBR2P37173 567 aa2.23□□□□□ -2.05
CD44-223ENST00000526553 PSMB3P49720 205 aa2.23□□□□□ -2.05
CD44-223ENST00000526553 KLF3P57682 345 aaPredicted RBP2.23□□□□□ -2.05
CD44-223ENST00000526553 DEFB103AP81534 67 aa2.23□□□□□ -2.05
CD44-223ENST00000526553 IL15RAQ13261 267 aa2.23□□□□□ -2.05
CD44-223ENST00000526553 EBPQ15125 230 aaKnown RBP2.23□□□□□ -2.05
CD44-223ENST00000526553 TRMT12Q53H54 448 aaKnown RBP2.23□□□□□ -2.05
CD44-223ENST00000526553 ZNF660Q6AZW8 331 aaPredicted RBP2.23□□□□□ -2.05
CD44-223ENST00000526553 EBLN2Q6P2I7 272 aa2.23□□□□□ -2.05
CD44-223ENST00000526553 KRT222Q8N1A0 295 aa2.23□□□□□ -2.05
CD44-223ENST00000526553 RIBC1Q8N443 379 aaPredicted RBP2.23□□□□□ -2.05
CD44-223ENST00000526553 LINC00304Q8N9R0 145 aa2.23□□□□□ -2.05
CD44-223ENST00000526553 PIGXQ8TBF5 258 aa2.23□□□□□ -2.05
CD44-223ENST00000526553 PHOSPHO2Q8TCD6 241 aa2.23□□□□□ -2.05
CD44-223ENST00000526553 SLC37A2Q8TED4 501 aa2.23□□□□□ -2.05
CD44-223ENST00000526553 UBE2WQ96B02 151 aa2.23□□□□□ -2.05
CD44-223ENST00000526553 MROQ9BYG7 248 aa2.23□□□□□ -2.05
CD44-223ENST00000526553 POTEKPQ9BYX7 375 aa2.23□□□□□ -2.05
CD44-223ENST00000526553 ZNF286AQ9HBT8 521 aa2.23□□□□□ -2.05
CD44-223ENST00000526553 KCNIP2Q9NS61 270 aa2.23□□□□□ -2.05
CD44-223ENST00000526553 FIS1Q9Y3D6 152 aa2.23□□□□□ -2.05
CD44-223ENST00000526553 BAHCC1Q9P281 2608 aa2.23□□□□□ -2.05
CD44-223ENST00000526553 EP300Q09472 2414 aaPredicted RBP2.23□□□□□ -2.05
CD44-223ENST00000526553 LCTP09848 1927 aa2.23□□□□□ -2.05
CD44-223ENST00000526553 UQCRHLA0A096LP55 91 aa2.22□□□□□ -2.05
CD44-223ENST00000526553 A0A0B4J2C4 111 aa2.22□□□□□ -2.05
CD44-223ENST00000526553 C4orf51C9J302 202 aa2.22□□□□□ -2.05
CD44-223ENST00000526553 M0QZ92 97 aa2.22□□□□□ -2.05
CD44-223ENST00000526553 SH2D1AO60880 128 aa2.22□□□□□ -2.05
CD44-223ENST00000526553 S100A6P06703 90 aa2.22□□□□□ -2.05
CD44-223ENST00000526553 UQCRHP07919 91 aa2.22□□□□□ -2.05
CD44-223ENST00000526553 AKR1C2P52895 323 aa2.22□□□□□ -2.05
CD44-223ENST00000526553 FOXA1P55317 472 aa2.22□□□□□ -2.05
CD44-223ENST00000526553 MLLT11Q13015 90 aaPredicted RBP2.22□□□□□ -2.05
CD44-223ENST00000526553 PDK2Q15119 407 aa2.22□□□□□ -2.05
CD44-223ENST00000526553 LGALSLQ3ZCW2 172 aaPredicted RBP2.22□□□□□ -2.05
CD44-223ENST00000526553 COQ5Q5HYK3 327 aa2.22□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms