RNA–Protein interactions for RNA: ENST00000505705.1

LIMCH1-206, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 437 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-206ENST00000505705 C5orf56Q8N8D9 126 aa6.54□□□□□ -1.36
LIMCH1-206ENST00000505705 ADAD2Q8NCV1 583 aaKnown RBP6.54□□□□□ -1.36
LIMCH1-206ENST00000505705 NPBQ8NG41 125 aa6.54□□□□□ -1.36
LIMCH1-206ENST00000505705 OR4F5Q8NH21 305 aa6.54□□□□□ -1.36
LIMCH1-206ENST00000505705 RNASE11Q8TAA1 199 aaKnown RBP6.54□□□□□ -1.36
LIMCH1-206ENST00000505705 VSTM2AQ8TAG5 236 aa6.54□□□□□ -1.36
LIMCH1-206ENST00000505705 ABHD5Q8WTS1 349 aa6.54□□□□□ -1.36
LIMCH1-206ENST00000505705 MRGPRFQ96AM1 343 aa6.54□□□□□ -1.36
LIMCH1-206ENST00000505705 RANBP3Q9H6Z4 567 aaPredicted RBP6.54□□□□□ -1.36
LIMCH1-206ENST00000505705 NAA60Q9H7X0 242 aa6.54□□□□□ -1.36
LIMCH1-206ENST00000505705 BEX1Q9HBH7 125 aa6.54□□□□□ -1.36
LIMCH1-206ENST00000505705 NAV3Q8IVL0 2385 aa6.54□□□□□ -1.36
LIMCH1-206ENST00000505705 TRAV6A0A075B6T7 132 aa6.53□□□□□ -1.36
LIMCH1-206ENST00000505705 CRYM-AS1A6NIL9 109 aa6.53□□□□□ -1.36
LIMCH1-206ENST00000505705 SRRM4A7MD48 611 aaKnown RBP6.53□□□□□ -1.36
LIMCH1-206ENST00000505705 H0Y980 276 aa6.53□□□□□ -1.36
LIMCH1-206ENST00000505705 RBFOX2O43251 390 aaKnown RBP eCLIP6.53□□□□□ -1.36
LIMCH1-206ENST00000505705 CREBL2O60519 120 aaPredicted RBP6.53□□□□□ -1.36
LIMCH1-206ENST00000505705 B3GALNT1O75752 331 aa6.53□□□□□ -1.36
LIMCH1-206ENST00000505705 ACTL6BO94805 426 aa6.53□□□□□ -1.36
LIMCH1-206ENST00000505705 OR2A4O95047 310 aa6.53□□□□□ -1.36
LIMCH1-206ENST00000505705 S1PR2O95136 353 aa6.53□□□□□ -1.36
LIMCH1-206ENST00000505705 NDUFB6O95139 128 aa6.53□□□□□ -1.36
LIMCH1-206ENST00000505705 NDUFA3O95167 84 aa6.53□□□□□ -1.36
LIMCH1-206ENST00000505705 SPDEFO95238 335 aa6.53□□□□□ -1.36
LIMCH1-206ENST00000505705 CNIH1O95406 144 aa6.53□□□□□ -1.36
LIMCH1-206ENST00000505705 KRASP01116 189 aa6.53□□□□□ -1.36
LIMCH1-206ENST00000505705 TCRBP04435 133 aa6.53□□□□□ -1.36
LIMCH1-206ENST00000505705 OR5AC1P0C628 307 aa6.53□□□□□ -1.36
LIMCH1-206ENST00000505705 SAA1P0DJI8 122 aaPredicted RBP6.53□□□□□ -1.36
LIMCH1-206ENST00000505705 HKR1P10072 659 aa6.53□□□□□ -1.36
LIMCH1-206ENST00000505705 BTCP35070 178 aa6.53□□□□□ -1.36
LIMCH1-206ENST00000505705 G6PCP35575 357 aa6.53□□□□□ -1.36
LIMCH1-206ENST00000505705 VDAC2P45880 294 aaPredicted RBP6.53□□□□□ -1.36
LIMCH1-206ENST00000505705 UBE2KP61086 200 aa6.53□□□□□ -1.36
LIMCH1-206ENST00000505705 IFITM3Q01628 133 aa6.53□□□□□ -1.36
LIMCH1-206ENST00000505705 DHODHQ02127 395 aa6.53□□□□□ -1.36
LIMCH1-206ENST00000505705 C5orf64Q2M2E5 130 aa6.53□□□□□ -1.36
LIMCH1-206ENST00000505705 KRTAP24-1Q3LI83 254 aa6.53□□□□□ -1.36
LIMCH1-206ENST00000505705 C4orf46Q504U0 113 aa6.53□□□□□ -1.36
LIMCH1-206ENST00000505705 SLC35E3Q7Z769 313 aa6.53□□□□□ -1.36
LIMCH1-206ENST00000505705 PPP1R27Q86WC6 154 aa6.53□□□□□ -1.36
LIMCH1-206ENST00000505705 ZNF695Q8IW36 515 aa6.53□□□□□ -1.36
LIMCH1-206ENST00000505705 FOXRED2Q8IWF2 684 aa6.53□□□□□ -1.36
LIMCH1-206ENST00000505705 FAM71E2Q8N5Q1 922 aa6.53□□□□□ -1.36
LIMCH1-206ENST00000505705 TEX45Q8NA69 505 aa6.53□□□□□ -1.36
LIMCH1-206ENST00000505705 CASTOR1Q8WTX7 329 aa6.53□□□□□ -1.36
LIMCH1-206ENST00000505705 R3HDM4Q96D70 268 aa6.53□□□□□ -1.36
LIMCH1-206ENST00000505705 OR2A7Q96R45 310 aa6.53□□□□□ -1.36
LIMCH1-206ENST00000505705 TP53RKQ96S44 253 aa6.53□□□□□ -1.36
LIMCH1-206ENST00000505705 C19orf24Q9BVV8 132 aa6.53□□□□□ -1.36
LIMCH1-206ENST00000505705 PLEKHA2Q9HB19 425 aa6.53□□□□□ -1.36
LIMCH1-206ENST00000505705 PLSCR3Q9NRY6 295 aa6.53□□□□□ -1.36
LIMCH1-206ENST00000505705 COMMD9Q9P000 198 aa6.53□□□□□ -1.36
LIMCH1-206ENST00000505705 TBC1D24Q9ULP9 559 aa6.53□□□□□ -1.36
LIMCH1-206ENST00000505705 FLVCR2Q9UPI3 526 aa6.53□□□□□ -1.36
LIMCH1-206ENST00000505705 MARCH11A6NNE9 402 aa6.52□□□□□ -1.37
LIMCH1-206ENST00000505705 KCNAB3O43448 404 aa6.52□□□□□ -1.37
LIMCH1-206ENST00000505705 RBMXL2O75526 392 aaKnown RBP6.52□□□□□ -1.37
LIMCH1-206ENST00000505705 TSPAN9O75954 239 aa6.52□□□□□ -1.37
LIMCH1-206ENST00000505705 NDUFA7O95182 113 aa6.52□□□□□ -1.37
LIMCH1-206ENST00000505705 CA2P00918 260 aa6.52□□□□□ -1.37
LIMCH1-206ENST00000505705 IGLV2-23P01705 113 aa6.52□□□□□ -1.37
LIMCH1-206ENST00000505705 VSIG10L2P0DP72 767 aa6.52□□□□□ -1.37
LIMCH1-206ENST00000505705 SLC6A1P30531 599 aa6.52□□□□□ -1.37
LIMCH1-206ENST00000505705 AKR1C2P52895 323 aa6.52□□□□□ -1.37
LIMCH1-206ENST00000505705 RAB25P57735 213 aa6.52□□□□□ -1.37
LIMCH1-206ENST00000505705 BRWD1-AS2P59051 145 aa6.52□□□□□ -1.37
LIMCH1-206ENST00000505705 RELBQ01201 579 aa6.52□□□□□ -1.37
LIMCH1-206ENST00000505705 TNXAQ16473 311 aa6.52□□□□□ -1.37
LIMCH1-206ENST00000505705 ZNF585BQ52M93 769 aa6.52□□□□□ -1.37
LIMCH1-206ENST00000505705 TMEM128Q5BJH2 165 aa6.52□□□□□ -1.37
LIMCH1-206ENST00000505705 PLET1Q6UQ28 207 aa6.52□□□□□ -1.37
LIMCH1-206ENST00000505705 H2BFWTQ7Z2G1 175 aa6.52□□□□□ -1.37
LIMCH1-206ENST00000505705 CENPVQ7Z7K6 275 aaPredicted RBP6.52□□□□□ -1.37
LIMCH1-206ENST00000505705 TMEM230Q96A57 120 aa6.52□□□□□ -1.37
LIMCH1-206ENST00000505705 RRNAD1Q96FB5 475 aaKnown RBP6.52□□□□□ -1.37
LIMCH1-206ENST00000505705 RHOVQ96L33 236 aa6.52□□□□□ -1.37
LIMCH1-206ENST00000505705 PHB2Q99623 299 aa6.52□□□□□ -1.37
LIMCH1-206ENST00000505705 C20orf85Q9H1P6 137 aa6.52□□□□□ -1.37
LIMCH1-206ENST00000505705 ZNF702PQ9H963 129 aa6.52□□□□□ -1.37
LIMCH1-206ENST00000505705 PARP11Q9NR21 331 aa6.52□□□□□ -1.37
LIMCH1-206ENST00000505705 FAM212BQ9NTI7 297 aaPredicted RBP6.52□□□□□ -1.37
LIMCH1-206ENST00000505705 SIGLEC9Q9Y336 463 aa6.52□□□□□ -1.37
LIMCH1-206ENST00000505705 RNF114Q9Y508 228 aa6.52□□□□□ -1.37
LIMCH1-206ENST00000505705 NUBP2Q9Y5Y2 271 aa6.52□□□□□ -1.37
LIMCH1-206ENST00000505705 A0A1B0GUS0 222 aa6.51□□□□□ -1.37
LIMCH1-206ENST00000505705 CLPSL1A2RUU4 121 aa6.51□□□□□ -1.37
LIMCH1-206ENST00000505705 FCN1O00602 326 aa6.51□□□□□ -1.37
LIMCH1-206ENST00000505705 SNAPC5O75971 98 aa6.51□□□□□ -1.37
LIMCH1-206ENST00000505705 KBTBD11O94819 623 aa6.51□□□□□ -1.37
LIMCH1-206ENST00000505705 SFT2D2O95562 160 aa6.51□□□□□ -1.37
LIMCH1-206ENST00000505705 HLA-AP01891 365 aaKnown RBP6.51□□□□□ -1.37
LIMCH1-206ENST00000505705 HLA-DRB1P01911 266 aa6.51□□□□□ -1.37
LIMCH1-206ENST00000505705 AMY1AP04745 511 aa6.51□□□□□ -1.37
LIMCH1-206ENST00000505705 H2AFB2P0C5Z0 115 aa6.51□□□□□ -1.37
LIMCH1-206ENST00000505705 OR4E1P0C645 316 aa6.51□□□□□ -1.37
LIMCH1-206ENST00000505705 ANXA7P20073 488 aaKnown RBP6.51□□□□□ -1.37
LIMCH1-206ENST00000505705 MDKP21741 143 aaPredicted RBP6.51□□□□□ -1.37
LIMCH1-206ENST00000505705 VDAC1P21796 283 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms