RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 DEFA3P59666 94 aa9.45□□□□□ -0.9
CUX1-210ENST00000497815 RPL15P61313 204 aaKnown RBP9.45□□□□□ -0.9
CUX1-210ENST00000497815 C5orf64Q2M2E5 130 aa9.45□□□□□ -0.9
CUX1-210ENST00000497815 TRIM16LQ309B1 348 aa9.45□□□□□ -0.9
CUX1-210ENST00000497815 VMA21Q3ZAQ7 101 aa9.45□□□□□ -0.9
CUX1-210ENST00000497815 ZNF585BQ52M93 769 aa9.45□□□□□ -0.9
CUX1-210ENST00000497815 SGPP2Q8IWX5 399 aa9.45□□□□□ -0.9
CUX1-210ENST00000497815 CENPSQ8N2Z9 138 aa9.45□□□□□ -0.9
CUX1-210ENST00000497815 FAM71E2Q8N5Q1 922 aa9.45□□□□□ -0.9
CUX1-210ENST00000497815 ENKURQ8TC29 256 aa9.45□□□□□ -0.9
CUX1-210ENST00000497815 CD300LFQ8TDQ1 290 aa9.45□□□□□ -0.9
CUX1-210ENST00000497815 PRSS22Q9GZN4 317 aa9.45□□□□□ -0.9
CUX1-210ENST00000497815 ZNF702PQ9H963 129 aa9.45□□□□□ -0.9
CUX1-210ENST00000497815 BEX1Q9HBH7 125 aa9.45□□□□□ -0.9
CUX1-210ENST00000497815 TPSG1Q9NRR2 321 aa9.45□□□□□ -0.9
CUX1-210ENST00000497815 PRR13Q9NZ81 148 aa9.45□□□□□ -0.9
CUX1-210ENST00000497815 TRAV6A0A075B6T7 132 aa9.44□□□□□ -0.9
CUX1-210ENST00000497815 H0Y980 276 aa9.44□□□□□ -0.9
CUX1-210ENST00000497815 FCN1O00602 326 aa9.44□□□□□ -0.9
CUX1-210ENST00000497815 SPDEFO95238 335 aa9.44□□□□□ -0.9
CUX1-210ENST00000497815 HRASP01112 189 aa9.44□□□□□ -0.9
CUX1-210ENST00000497815 KRASP01116 189 aa9.44□□□□□ -0.9
CUX1-210ENST00000497815 TCRBP04435 133 aa9.44□□□□□ -0.9
CUX1-210ENST00000497815 SERPINE2P07093 398 aa9.44□□□□□ -0.9
CUX1-210ENST00000497815 SAA1P0DJI8 122 aaPredicted RBP9.44□□□□□ -0.9
CUX1-210ENST00000497815 HKR1P10072 659 aa9.44□□□□□ -0.9
CUX1-210ENST00000497815 ANXA7P20073 488 aaKnown RBP9.44□□□□□ -0.9
CUX1-210ENST00000497815 VAMP1P23763 118 aa9.44□□□□□ -0.9
CUX1-210ENST00000497815 SLC6A1P30531 599 aa9.44□□□□□ -0.9
CUX1-210ENST00000497815 UBE2KP61086 200 aa9.44□□□□□ -0.9
CUX1-210ENST00000497815 GNB1P62873 340 aa9.44□□□□□ -0.9
CUX1-210ENST00000497815 TMEM95Q3KNT9 176 aa9.44□□□□□ -0.9
CUX1-210ENST00000497815 LIN54Q6MZP7 749 aa9.44□□□□□ -0.9
CUX1-210ENST00000497815 TCTEX1D1Q8N7M0 179 aa9.44□□□□□ -0.9
CUX1-210ENST00000497815 DMBX1Q8NFW5 382 aa9.44□□□□□ -0.9
CUX1-210ENST00000497815 OR2T6Q8NHC8 308 aa9.44□□□□□ -0.9
CUX1-210ENST00000497815 R3HDM4Q96D70 268 aa9.44□□□□□ -0.9
CUX1-210ENST00000497815 RHOVQ96L33 236 aa9.44□□□□□ -0.9
CUX1-210ENST00000497815 HSPB9Q9BQS6 159 aa9.44□□□□□ -0.9
CUX1-210ENST00000497815 C19orf24Q9BVV8 132 aa9.44□□□□□ -0.9
CUX1-210ENST00000497815 C20orf85Q9H1P6 137 aa9.44□□□□□ -0.9
CUX1-210ENST00000497815 RANBP3Q9H6Z4 567 aaPredicted RBP9.44□□□□□ -0.9
CUX1-210ENST00000497815 PLEKHA2Q9HB19 425 aa9.44□□□□□ -0.9
CUX1-210ENST00000497815 NUDT15Q9NV35 164 aa9.44□□□□□ -0.9
CUX1-210ENST00000497815 SETD2Q9BYW2 2564 aaPredicted RBP9.44□□□□□ -0.9
CUX1-210ENST00000497815 LINC01548A6NM66 108 aa9.43□□□□□ -0.9
CUX1-210ENST00000497815 TSPAN9O75954 239 aa9.43□□□□□ -0.9
CUX1-210ENST00000497815 NDUFA7O95182 113 aa9.43□□□□□ -0.9
CUX1-210ENST00000497815 CA2P00918 260 aa9.43□□□□□ -0.9
CUX1-210ENST00000497815 NQO2P16083 231 aa9.43□□□□□ -0.9
CUX1-210ENST00000497815 MDKP21741 143 aaPredicted RBP9.43□□□□□ -0.9
CUX1-210ENST00000497815 G6PCP35575 357 aa9.43□□□□□ -0.9
CUX1-210ENST00000497815 RAB25P57735 213 aa9.43□□□□□ -0.9
CUX1-210ENST00000497815 TAS2R31P59538 309 aa9.43□□□□□ -0.9
CUX1-210ENST00000497815 ERVK-16P61578 105 aa9.43□□□□□ -0.9
CUX1-210ENST00000497815 SUPT4H1P63272 117 aaKnown RBP9.43□□□□□ -0.9
CUX1-210ENST00000497815 PJVKQ0ZLH3 352 aa9.43□□□□□ -0.9
CUX1-210ENST00000497815 NRARPQ7Z6K4 114 aa9.43□□□□□ -0.9
CUX1-210ENST00000497815 PPP1R27Q86WC6 154 aa9.43□□□□□ -0.9
CUX1-210ENST00000497815 OR4F5Q8NH21 305 aa9.43□□□□□ -0.9
CUX1-210ENST00000497815 TMEM158Q8WZ71 300 aa9.43□□□□□ -0.9
CUX1-210ENST00000497815 TMEM222Q9H0R3 208 aa9.43□□□□□ -0.9
CUX1-210ENST00000497815 COMMD9Q9P000 198 aa9.43□□□□□ -0.9
CUX1-210ENST00000497815 KCNIP3Q9Y2W7 256 aa9.43□□□□□ -0.9
CUX1-210ENST00000497815 MARCH11A6NNE9 402 aa9.42□□□□□ -0.9
CUX1-210ENST00000497815 OR2A4O95047 310 aa9.42□□□□□ -0.9
CUX1-210ENST00000497815 IGKV1-39P01597 117 aa9.42□□□□□ -0.9
CUX1-210ENST00000497815 HLA-DRB1P01911 266 aa9.42□□□□□ -0.9
CUX1-210ENST00000497815 IGKV1D-39P04432 117 aa9.42□□□□□ -0.9
CUX1-210ENST00000497815 CRYGBP07316 175 aa9.42□□□□□ -0.9
CUX1-210ENST00000497815 UCP1P25874 307 aa9.42□□□□□ -0.9
CUX1-210ENST00000497815 VDAC2P45880 294 aaPredicted RBP9.42□□□□□ -0.9
CUX1-210ENST00000497815 PPP1R1AQ13522 171 aa9.42□□□□□ -0.9
CUX1-210ENST00000497815 C4orf46Q504U0 113 aa9.42□□□□□ -0.9
CUX1-210ENST00000497815 TMEM128Q5BJH2 165 aa9.42□□□□□ -0.9
CUX1-210ENST00000497815 OR4A47Q6IF82 309 aa9.42□□□□□ -0.9
CUX1-210ENST00000497815 SLC35E3Q7Z769 313 aa9.42□□□□□ -0.9
CUX1-210ENST00000497815 SLC25A42Q86VD7 318 aa9.42□□□□□ -0.9
CUX1-210ENST00000497815 TEX45Q8NA69 505 aa9.42□□□□□ -0.9
CUX1-210ENST00000497815 LINC01006Q8NI28 216 aa9.42□□□□□ -0.9
CUX1-210ENST00000497815 ABHD5Q8WTS1 349 aa9.42□□□□□ -0.9
CUX1-210ENST00000497815 CASTOR1Q8WTX7 329 aa9.42□□□□□ -0.9
CUX1-210ENST00000497815 OR2A7Q96R45 310 aa9.42□□□□□ -0.9
CUX1-210ENST00000497815 AIFM2Q9BRQ8 373 aa9.42□□□□□ -0.9
CUX1-210ENST00000497815 PARP11Q9NR21 331 aa9.42□□□□□ -0.9
CUX1-210ENST00000497815 FAM212BQ9NTI7 297 aaPredicted RBP9.42□□□□□ -0.9
CUX1-210ENST00000497815 TMEM140Q9NV12 185 aa9.42□□□□□ -0.9
CUX1-210ENST00000497815 LINC00527Q9UJ94 153 aa9.42□□□□□ -0.9
CUX1-210ENST00000497815 IGHV7-81A0A0B4J1V7 117 aa9.41□□□□□ -0.9
CUX1-210ENST00000497815 TRAV3A0A0B4J244 114 aa9.41□□□□□ -0.9
CUX1-210ENST00000497815 B3GALNT1O75752 331 aa9.41□□□□□ -0.9
CUX1-210ENST00000497815 KBTBD11O94819 623 aa9.41□□□□□ -0.9
CUX1-210ENST00000497815 CNIH1O95406 144 aa9.41□□□□□ -0.9
CUX1-210ENST00000497815 H2AFB2P0C5Z0 115 aa9.41□□□□□ -0.9
CUX1-210ENST00000497815 OR4E1P0C645 316 aa9.41□□□□□ -0.9
CUX1-210ENST00000497815 ANXA3P12429 323 aa9.41□□□□□ -0.9
CUX1-210ENST00000497815 AKR1C2P52895 323 aa9.41□□□□□ -0.9
CUX1-210ENST00000497815 CX3CL1P78423 397 aa9.41□□□□□ -0.9
CUX1-210ENST00000497815 DHODHQ02127 395 aa9.41□□□□□ -0.9
CUX1-210ENST00000497815 DCTN2Q13561 401 aaKnown RBP9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms