RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 PTTG1IPP53801 180 aa8.09□□□□□ -1.11
SYNE1-230ENST00000495090 PRRX1P54821 245 aa8.09□□□□□ -1.11
SYNE1-230ENST00000495090 KRTDAPP60985 99 aa8.09□□□□□ -1.11
SYNE1-230ENST00000495090 CX3CL1P78423 397 aa8.09□□□□□ -1.11
SYNE1-230ENST00000495090 ZNF816Q0VGE8 651 aaPredicted RBP8.09□□□□□ -1.11
SYNE1-230ENST00000495090 PSG7Q13046 419 aa8.09□□□□□ -1.11
SYNE1-230ENST00000495090 UBE2V1Q13404 147 aa8.09□□□□□ -1.11
SYNE1-230ENST00000495090 TRA2AQ13595 282 aaKnown RBP eCLIP8.09□□□□□ -1.11
SYNE1-230ENST00000495090 IGFBP7Q16270 282 aa8.09□□□□□ -1.11
SYNE1-230ENST00000495090 PDLIM3Q53GG5 364 aaPredicted RBP8.09□□□□□ -1.11
SYNE1-230ENST00000495090 SLC23A3Q6PIS1 610 aa8.09□□□□□ -1.11
SYNE1-230ENST00000495090 OR2M7Q8NG81 312 aa8.09□□□□□ -1.11
SYNE1-230ENST00000495090 ABHD3Q8WU67 409 aa8.09□□□□□ -1.11
SYNE1-230ENST00000495090 C5orf30Q96GV9 206 aa8.09□□□□□ -1.11
SYNE1-230ENST00000495090 EAF1Q96JC9 268 aaPredicted RBP8.09□□□□□ -1.11
SYNE1-230ENST00000495090 UHRF2Q96PU4 802 aa8.09□□□□□ -1.11
SYNE1-230ENST00000495090 TXN2Q99757 166 aa8.09□□□□□ -1.11
SYNE1-230ENST00000495090 PRRG4Q9BZD6 226 aa8.09□□□□□ -1.11
SYNE1-230ENST00000495090 OR2D2Q9H210 308 aa8.09□□□□□ -1.11
SYNE1-230ENST00000495090 CDC42EP3Q9UKI2 254 aa8.09□□□□□ -1.11
SYNE1-230ENST00000495090 RNF114Q9Y508 228 aa8.09□□□□□ -1.11
SYNE1-230ENST00000495090 V9GYV3 84 aa8.09□□□□□ -1.11
SYNE1-230ENST00000495090 GON4LQ3T8J9 2241 aa8.08□□□□□ -1.12
SYNE1-230ENST00000495090 C2CD4DB7Z1M9 353 aa8.08□□□□□ -1.12
SYNE1-230ENST00000495090 F2Z2F3 143 aa8.08□□□□□ -1.12
SYNE1-230ENST00000495090 CCL25O15444 150 aa8.08□□□□□ -1.12
SYNE1-230ENST00000495090 ZNF324O75467 553 aaPredicted RBP8.08□□□□□ -1.12
SYNE1-230ENST00000495090 RHBDL1O75783 438 aa8.08□□□□□ -1.12
SYNE1-230ENST00000495090 NXPH2O95156 264 aa8.08□□□□□ -1.12
SYNE1-230ENST00000495090 GCHFRP30047 84 aa8.08□□□□□ -1.12
SYNE1-230ENST00000495090 AMTP48728 403 aa8.08□□□□□ -1.12
SYNE1-230ENST00000495090 THBS3P49746 956 aa8.08□□□□□ -1.12
SYNE1-230ENST00000495090 EDDM3BP56851 147 aa8.08□□□□□ -1.12
SYNE1-230ENST00000495090 BRWD1-AS2P59051 145 aa8.08□□□□□ -1.12
SYNE1-230ENST00000495090 RPL31P62899 125 aaKnown RBP8.08□□□□□ -1.12
SYNE1-230ENST00000495090 PMCHL1Q16048 86 aa8.08□□□□□ -1.12
SYNE1-230ENST00000495090 GCSAMLQ5JQS6 135 aa8.08□□□□□ -1.12
SYNE1-230ENST00000495090 SPATA46Q5T0L3 261 aa8.08□□□□□ -1.12
SYNE1-230ENST00000495090 Q6ZN92 141 aa8.08□□□□□ -1.12
SYNE1-230ENST00000495090 PNKDQ8N490 385 aa8.08□□□□□ -1.12
SYNE1-230ENST00000495090 SMRP1Q8NCR6 262 aa8.08□□□□□ -1.12
SYNE1-230ENST00000495090 GALMQ96C23 342 aa8.08□□□□□ -1.12
SYNE1-230ENST00000495090 GGTLC1Q9BX51 225 aa8.08□□□□□ -1.12
SYNE1-230ENST00000495090 A0A1W2PQM1 296 aa8.07□□□□□ -1.12
SYNE1-230ENST00000495090 A0A1W2PS18 150 aa8.07□□□□□ -1.12
SYNE1-230ENST00000495090 TMEM30CPA0ZSE6 113 aa8.07□□□□□ -1.12
SYNE1-230ENST00000495090 C17orf98A8MV24 154 aa8.07□□□□□ -1.12
SYNE1-230ENST00000495090 SIRPB1O00241 398 aa8.07□□□□□ -1.12
SYNE1-230ENST00000495090 SH2D1BO14796 132 aa8.07□□□□□ -1.12
SYNE1-230ENST00000495090 TRAPPC6AO75865 159 aa8.07□□□□□ -1.12
SYNE1-230ENST00000495090 NGFP01138 241 aa8.07□□□□□ -1.12
SYNE1-230ENST00000495090 HLA-DQA1P01909 254 aa8.07□□□□□ -1.12
SYNE1-230ENST00000495090 HOXC12P31275 282 aa8.07□□□□□ -1.12
SYNE1-230ENST00000495090 CLDN18P56856 261 aa8.07□□□□□ -1.12
SYNE1-230ENST00000495090 HTD2P86397 168 aa8.07□□□□□ -1.12
SYNE1-230ENST00000495090 IL11RAQ14626 422 aa8.07□□□□□ -1.12
SYNE1-230ENST00000495090 HLA-BQ31612 363 aa8.07□□□□□ -1.12
SYNE1-230ENST00000495090 TREML4Q6UXN2 200 aa8.07□□□□□ -1.12
SYNE1-230ENST00000495090 ZNF738Q8NE65 137 aa8.07□□□□□ -1.12
SYNE1-230ENST00000495090 OR52E5Q8NH55 327 aa8.07□□□□□ -1.12
SYNE1-230ENST00000495090 HSD17B10Q99714 261 aaKnown RBP8.07□□□□□ -1.12
SYNE1-230ENST00000495090 RTL8AQ9BWD3 113 aa8.07□□□□□ -1.12
SYNE1-230ENST00000495090 AKIRIN1Q9H9L7 192 aaPredicted RBP8.07□□□□□ -1.12
SYNE1-230ENST00000495090 MRPL27Q9P0M9 148 aaKnown RBP8.07□□□□□ -1.12
SYNE1-230ENST00000495090 SH3BGRL2Q9UJC5 107 aa8.07□□□□□ -1.12
SYNE1-230ENST00000495090 YTHDF2Q9Y5A9 579 aaKnown RBP8.07□□□□□ -1.12
SYNE1-230ENST00000495090 COX11Q9Y6N1 276 aa8.07□□□□□ -1.12
SYNE1-230ENST00000495090 DPRXA6NFQ7 191 aa8.07□□□□□ -1.12
SYNE1-230ENST00000495090 OOEPA6NGQ2 149 aa8.07□□□□□ -1.12
SYNE1-230ENST00000495090 PRSS46E5RG02 174 aa8.07□□□□□ -1.12
SYNE1-230ENST00000495090 J3QW42 95 aa8.07□□□□□ -1.12
SYNE1-230ENST00000495090 SLC17A3O00476 420 aa8.07□□□□□ -1.12
SYNE1-230ENST00000495090 CCL2P13500 99 aa8.07□□□□□ -1.12
SYNE1-230ENST00000495090 GFRA1P56159 465 aa8.07□□□□□ -1.12
SYNE1-230ENST00000495090 RHOBP62745 196 aa8.07□□□□□ -1.12
SYNE1-230ENST00000495090 PLP2Q04941 152 aa8.07□□□□□ -1.12
SYNE1-230ENST00000495090 TMEM136Q6ZRR5 245 aa8.07□□□□□ -1.12
SYNE1-230ENST00000495090 ST6GALNAC3Q8NDV1 305 aa8.07□□□□□ -1.12
SYNE1-230ENST00000495090 RNASE8Q8TDE3 154 aaKnown RBP8.07□□□□□ -1.12
SYNE1-230ENST00000495090 FAM216AQ8WUB2 273 aa8.07□□□□□ -1.12
SYNE1-230ENST00000495090 MGST2Q99735 147 aa8.07□□□□□ -1.12
SYNE1-230ENST00000495090 DUSP23Q9BVJ7 150 aa8.07□□□□□ -1.12
SYNE1-230ENST00000495090 GSX1Q9H4S2 264 aaPredicted RBP8.07□□□□□ -1.12
SYNE1-230ENST00000495090 OSTCQ9NRP0 149 aa8.07□□□□□ -1.12
SYNE1-230ENST00000495090 SLC35D1Q9NTN3 355 aa8.07□□□□□ -1.12
SYNE1-230ENST00000495090 BET1LQ9NYM9 111 aa8.07□□□□□ -1.12
SYNE1-230ENST00000495090 NAT8BQ9UHF3 227 aa8.07□□□□□ -1.12
SYNE1-230ENST00000495090 A0A096LPE4 126 aa8.06□□□□□ -1.12
SYNE1-230ENST00000495090 IGHV2-26A0A0B4J1V2 119 aa8.06□□□□□ -1.12
SYNE1-230ENST00000495090 A0A0G2JMM0 328 aa8.06□□□□□ -1.12
SYNE1-230ENST00000495090 A0A1W2PN81 502 aa8.06□□□□□ -1.12
SYNE1-230ENST00000495090 A0A1W2PPB8 328 aa8.06□□□□□ -1.12
SYNE1-230ENST00000495090 A0A1W2PPZ6 126 aa8.06□□□□□ -1.12
SYNE1-230ENST00000495090 A0A1W2PRS3 328 aa8.06□□□□□ -1.12
SYNE1-230ENST00000495090 ZNF891A8MT65 544 aaPredicted RBP8.06□□□□□ -1.12
SYNE1-230ENST00000495090 KIR3DP1A8MWS1 328 aa8.06□□□□□ -1.12
SYNE1-230ENST00000495090 RRHO14718 337 aa8.06□□□□□ -1.12
SYNE1-230ENST00000495090 KLF7O75840 302 aaPredicted RBP8.06□□□□□ -1.12
SYNE1-230ENST00000495090 BMP5P22003 454 aa8.06□□□□□ -1.12
SYNE1-230ENST00000495090 TSPOP30536 169 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms