RNA–Protein interactions for RNA: ENST00000485424.1

UBA3-210, Transcript of ubiquitin like modifier activating enzyme 3, human

TSL 2

Gene UBA3, Length 652 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBA3-210	ENST00000485424	IDO2	Q6ZQW0	420 aa		10.14	□□□□□ -0.79
UBA3-210	ENST00000485424	KCTD9	Q7L273	389 aa		10.14	□□□□□ -0.79
UBA3-210	ENST00000485424	H1FOO	Q8IZA3	346 aa	Predicted RBP	10.14	□□□□□ -0.79
UBA3-210	ENST00000485424	ZNF645	Q8N7E2	425 aa		10.14	□□□□□ -0.79
UBA3-210	ENST00000485424	SRSF12	Q8WXF0	261 aa	Known RBP	10.14	□□□□□ -0.79
UBA3-210	ENST00000485424	SNAPC3	Q92966	411 aa		10.14	□□□□□ -0.79
UBA3-210	ENST00000485424	TUBA4B	Q9H853	241 aa		10.14	□□□□□ -0.79
UBA3-210	ENST00000485424	SMIM30	A4D0T7	59 aa		10.13	□□□□□ -0.79
UBA3-210	ENST00000485424	DPPA5	A6NC42	116 aa		10.13	□□□□□ -0.79
UBA3-210	ENST00000485424	SLC22A5	O76082	557 aa		10.13	□□□□□ -0.79
UBA3-210	ENST00000485424	BRI3	O95415	125 aa		10.13	□□□□□ -0.79
UBA3-210	ENST00000485424	PSMB9	P28065	219 aa		10.13	□□□□□ -0.79
UBA3-210	ENST00000485424	GNG2	P59768	71 aa		10.13	□□□□□ -0.79
UBA3-210	ENST00000485424	GABARAPL2	P60520	117 aa		10.13	□□□□□ -0.79
UBA3-210	ENST00000485424	SSBP2	P81877	361 aa	Predicted RBP	10.13	□□□□□ -0.79
UBA3-210	ENST00000485424	KLF5	Q13887	457 aa	Predicted RBP	10.13	□□□□□ -0.79
UBA3-210	ENST00000485424	CDK10	Q15131	360 aa		10.13	□□□□□ -0.79
UBA3-210	ENST00000485424	PRSS8	Q16651	343 aa		10.13	□□□□□ -0.79
UBA3-210	ENST00000485424	CDNF	Q49AH0	187 aa		10.13	□□□□□ -0.79
UBA3-210	ENST00000485424		Q6ZS49	121 aa		10.13	□□□□□ -0.79
UBA3-210	ENST00000485424	SLC25A42	Q86VD7	318 aa		10.13	□□□□□ -0.79
UBA3-210	ENST00000485424	MMD2	Q8IY49	270 aa		10.13	□□□□□ -0.79
UBA3-210	ENST00000485424	CITED4	Q96RK1	184 aa		10.13	□□□□□ -0.79
UBA3-210	ENST00000485424	SPIN2A	Q99865	258 aa		10.13	□□□□□ -0.79
UBA3-210	ENST00000485424	SPIN2B	Q9BPZ2	258 aa		10.13	□□□□□ -0.79
UBA3-210	ENST00000485424	RAB26	Q9ULW5	256 aa		10.13	□□□□□ -0.79
UBA3-210	ENST00000485424	PLEC	Q15149	4684 aa	Known RBP	10.13	□□□□□ -0.79
UBA3-210	ENST00000485424	SHISA3	A0PJX4	238 aa		10.12	□□□□□ -0.79
UBA3-210	ENST00000485424	FAM223B	A6NKX1	122 aa		10.12	□□□□□ -0.79
UBA3-210	ENST00000485424	SRRM4	A7MD48	611 aa	Known RBP	10.12	□□□□□ -0.79
UBA3-210	ENST00000485424	LINC00473	A8K010	186 aa		10.12	□□□□□ -0.79
UBA3-210	ENST00000485424	NOTO	A8MTQ0	251 aa		10.12	□□□□□ -0.79
UBA3-210	ENST00000485424	MRPS14	O60783	128 aa	Known RBP	10.12	□□□□□ -0.79
UBA3-210	ENST00000485424	OR2A4	O95047	310 aa		10.12	□□□□□ -0.79
UBA3-210	ENST00000485424	ATP5G2	Q06055	141 aa		10.12	□□□□□ -0.79
UBA3-210	ENST00000485424	EXOSC2	Q13868	293 aa	Known RBP	10.12	□□□□□ -0.79
UBA3-210	ENST00000485424	OR2B11	Q5JQS5	317 aa		10.12	□□□□□ -0.79
UBA3-210	ENST00000485424	HACD4	Q5VWC8	232 aa		10.12	□□□□□ -0.79
UBA3-210	ENST00000485424	FAM223A	Q8IWN6	122 aa		10.12	□□□□□ -0.79
UBA3-210	ENST00000485424		Q8N402	240 aa		10.12	□□□□□ -0.79
UBA3-210	ENST00000485424	VSTM2A	Q8TAG5	236 aa		10.12	□□□□□ -0.79
UBA3-210	ENST00000485424	DYNLRB2	Q8TF09	96 aa		10.12	□□□□□ -0.79
UBA3-210	ENST00000485424	DDB2	Q92466	427 aa		10.12	□□□□□ -0.79
UBA3-210	ENST00000485424	FCGR1B	Q92637	280 aa		10.12	□□□□□ -0.79
UBA3-210	ENST00000485424	ISOC1	Q96CN7	298 aa		10.12	□□□□□ -0.79
UBA3-210	ENST00000485424	C5orf30	Q96GV9	206 aa		10.12	□□□□□ -0.79
UBA3-210	ENST00000485424	TM2D3	Q9BRN9	247 aa		10.12	□□□□□ -0.79
UBA3-210	ENST00000485424	DCSTAMP	Q9H295	470 aa		10.12	□□□□□ -0.79
UBA3-210	ENST00000485424		Q9H521	79 aa		10.12	□□□□□ -0.79
UBA3-210	ENST00000485424	SSR3	Q9UNL2	185 aa		10.12	□□□□□ -0.79
UBA3-210	ENST00000485424	OR2W1	Q9Y3N9	320 aa		10.12	□□□□□ -0.79
UBA3-210	ENST00000485424	AIRE	O43918	545 aa		10.11	□□□□□ -0.79
UBA3-210	ENST00000485424	IFNA6	P05013	189 aa		10.11	□□□□□ -0.79
UBA3-210	ENST00000485424	SAA1	P0DJI8	122 aa	Predicted RBP	10.11	□□□□□ -0.79
UBA3-210	ENST00000485424	NFYA	P23511	347 aa	Predicted RBP	10.11	□□□□□ -0.79
UBA3-210	ENST00000485424	RHOG	P84095	191 aa		10.11	□□□□□ -0.79
UBA3-210	ENST00000485424	DYRK1A	Q13627	763 aa		10.11	□□□□□ -0.79
UBA3-210	ENST00000485424	FAM209B	Q5JX69	171 aa		10.11	□□□□□ -0.79
UBA3-210	ENST00000485424	ZFAND6	Q6FIF0	208 aa		10.11	□□□□□ -0.79
UBA3-210	ENST00000485424	CNIH2	Q6PI25	160 aa		10.11	□□□□□ -0.79
UBA3-210	ENST00000485424	TPRA1	Q86W33	373 aa		10.11	□□□□□ -0.79
UBA3-210	ENST00000485424	ADAD2	Q8NCV1	583 aa	Known RBP	10.11	□□□□□ -0.79
UBA3-210	ENST00000485424	OR4S2	Q8NH73	311 aa		10.11	□□□□□ -0.79
UBA3-210	ENST00000485424	TCTEX1D2	Q8WW35	142 aa		10.11	□□□□□ -0.79
UBA3-210	ENST00000485424	SPATA25	Q9BR10	227 aa		10.11	□□□□□ -0.79
UBA3-210	ENST00000485424	ZNF430	Q9H8G1	570 aa	Predicted RBP	10.11	□□□□□ -0.79
UBA3-210	ENST00000485424	TXNL4B	Q9NX01	149 aa	Known RBP	10.11	□□□□□ -0.79
UBA3-210	ENST00000485424	DAPK2	Q9UIK4	370 aa		10.11	□□□□□ -0.79
UBA3-210	ENST00000485424	ELF5	Q9UKW6	265 aa	Predicted RBP	10.11	□□□□□ -0.79
UBA3-210	ENST00000485424	RBMX2	Q9Y388	322 aa	Known RBP	10.11	□□□□□ -0.79
UBA3-210	ENST00000485424	IGKV1D-8	A0A087WSZ0	117 aa		10.1	□□□□□ -0.79
UBA3-210	ENST00000485424	TMEM235	A6NFC5	223 aa		10.1	□□□□□ -0.79
UBA3-210	ENST00000485424		A8MZ25	164 aa		10.1	□□□□□ -0.79
UBA3-210	ENST00000485424	TRBV12-3	P01733	135 aa		10.1	□□□□□ -0.79
UBA3-210	ENST00000485424	PRH1	P02810	166 aa		10.1	□□□□□ -0.79
UBA3-210	ENST00000485424	ARPC4	P59998	168 aa		10.1	□□□□□ -0.79
UBA3-210	ENST00000485424		Q8N1Y9	231 aa		10.1	□□□□□ -0.79
UBA3-210	ENST00000485424	OR2K2	Q8NGT1	345 aa		10.1	□□□□□ -0.79
UBA3-210	ENST00000485424	NUDCD2	Q8WVJ2	157 aa		10.1	□□□□□ -0.79
UBA3-210	ENST00000485424	HSD17B10	Q99714	261 aa	Known RBP	10.1	□□□□□ -0.79
UBA3-210	ENST00000485424	OR51E2	Q9H255	320 aa		10.1	□□□□□ -0.79
UBA3-210	ENST00000485424	EDA2R	Q9HAV5	297 aa		10.1	□□□□□ -0.79
UBA3-210	ENST00000485424	AKIP1	Q9NQ31	210 aa		10.1	□□□□□ -0.79
UBA3-210	ENST00000485424	ADAM30	Q9UKF2	790 aa		10.1	□□□□□ -0.79
UBA3-210	ENST00000485424	SPATA2	Q9UM82	520 aa		10.1	□□□□□ -0.79
UBA3-210	ENST00000485424	RRP15	Q9Y3B9	282 aa	Known RBP	10.1	□□□□□ -0.79
UBA3-210	ENST00000485424	DHFR	P00374	187 aa		10.09	□□□□□ -0.79
UBA3-210	ENST00000485424	HLA-DQB1	P01920	261 aa		10.09	□□□□□ -0.79
UBA3-210	ENST00000485424	CSN3	P07498	182 aa		10.09	□□□□□ -0.79
UBA3-210	ENST00000485424	FGF9	P31371	208 aa	Predicted RBP	10.09	□□□□□ -0.79
UBA3-210	ENST00000485424	UBE2U	Q5VVX9	321 aa		10.09	□□□□□ -0.79
UBA3-210	ENST00000485424	NECAP1	Q8NC96	275 aa		10.09	□□□□□ -0.79
UBA3-210	ENST00000485424	FYTTD1	Q96QD9	318 aa	Known RBP	10.09	□□□□□ -0.79
UBA3-210	ENST00000485424	C19orf73	Q9NVV2	129 aa		10.09	□□□□□ -0.79
UBA3-210	ENST00000485424	SLC2A8	Q9NY64	477 aa		10.09	□□□□□ -0.79
UBA3-210	ENST00000485424	SIGLEC8	Q9NYZ4	499 aa		10.09	□□□□□ -0.79
UBA3-210	ENST00000485424	ZNF257	Q9Y2Q1	563 aa		10.09	□□□□□ -0.79
UBA3-210	ENST00000485424	OR2J3	O76001	311 aa		10.08	□□□□□ -0.8
UBA3-210	ENST00000485424	KBTBD11	O94819	623 aa		10.08	□□□□□ -0.8
UBA3-210	ENST00000485424	HRAS	P01112	189 aa		10.08	□□□□□ -0.8

Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms