RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 OR2W1Q9Y3N9 320 aa16.44■□□□□ 0.22
USP40-215ENST00000484528 FGF9P31371 208 aaPredicted RBP16.43■□□□□ 0.22
USP40-215ENST00000484528 GNG2P59768 71 aa16.43■□□□□ 0.22
USP40-215ENST00000484528 EXOSC2Q13868 293 aaKnown RBP16.43■□□□□ 0.22
USP40-215ENST00000484528 SGPP2Q8IWX5 399 aa16.43■□□□□ 0.22
USP40-215ENST00000484528 VKORC1L1Q8N0U8 176 aa16.43■□□□□ 0.22
USP40-215ENST00000484528 USMG5Q96IX5 58 aa16.43■□□□□ 0.22
USP40-215ENST00000484528 AKIP1Q9NQ31 210 aa16.43■□□□□ 0.22
USP40-215ENST00000484528 RBMX2Q9Y388 322 aaKnown RBP16.43■□□□□ 0.22
USP40-215ENST00000484528 SSX5O60225 188 aa16.42■□□□□ 0.22
USP40-215ENST00000484528 MRPS14O60783 128 aaKnown RBP16.42■□□□□ 0.22
USP40-215ENST00000484528 ACTL6BO94805 426 aa16.42■□□□□ 0.22
USP40-215ENST00000484528 HLA-DQB1P01920 261 aa16.42■□□□□ 0.22
USP40-215ENST00000484528 ZNF45Q02386 682 aa16.42■□□□□ 0.22
USP40-215ENST00000484528 CDK10Q15131 360 aa16.42■□□□□ 0.22
USP40-215ENST00000484528 CASC10Q5T4H9 136 aa16.42■□□□□ 0.22
USP40-215ENST00000484528 SFXN4Q6P4A7 337 aa16.42■□□□□ 0.22
USP40-215ENST00000484528 TENM2Q9NT68 2774 aa16.42■□□□□ 0.22
USP40-215ENST00000484528 IGLV2-14P01704 120 aa16.41■□□□□ 0.22
USP40-215ENST00000484528 CSN3P07498 182 aa16.41■□□□□ 0.22
USP40-215ENST00000484528 CTXN2P0C2S0 81 aa16.41■□□□□ 0.22
USP40-215ENST00000484528 CD36P16671 472 aa16.41■□□□□ 0.22
USP40-215ENST00000484528 MXD1Q05195 221 aa16.41■□□□□ 0.22
USP40-215ENST00000484528 MMD2Q8IY49 270 aa16.41■□□□□ 0.22
USP40-215ENST00000484528 GPHA2Q96T91 129 aa16.41■□□□□ 0.22
USP40-215ENST00000484528 TM2D3Q9BRN9 247 aa16.41■□□□□ 0.22
USP40-215ENST00000484528 OR51E2Q9H255 320 aa16.41■□□□□ 0.22
USP40-215ENST00000484528 DCSTAMPQ9H295 470 aa16.41■□□□□ 0.22
USP40-215ENST00000484528 C19orf73Q9NVV2 129 aa16.41■□□□□ 0.22
USP40-215ENST00000484528 SSR3Q9UNL2 185 aa16.41■□□□□ 0.22
USP40-215ENST00000484528 MRPS7Q9Y2R9 242 aaKnown RBP16.41■□□□□ 0.22
USP40-215ENST00000484528 PRELID3BQ9Y3B1 194 aa16.41■□□□□ 0.22
USP40-215ENST00000484528 IZUMO1RA6ND01 250 aa16.4■□□□□ 0.22
USP40-215ENST00000484528 HMX3A6NHT5 357 aa16.4■□□□□ 0.22
USP40-215ENST00000484528 BMPR1BO00238 502 aa16.4■□□□□ 0.22
USP40-215ENST00000484528 ATP6V1G2O95670 118 aa16.4■□□□□ 0.22
USP40-215ENST00000484528 CLEC2LP0C7M8 214 aa16.4■□□□□ 0.22
USP40-215ENST00000484528 CNIH2Q6PI25 160 aa16.4■□□□□ 0.22
USP40-215ENST00000484528 C19orf35Q6ZS72 473 aa16.4■□□□□ 0.22
USP40-215ENST00000484528 TCTEX1D2Q8WW35 142 aa16.4■□□□□ 0.22
USP40-215ENST00000484528 SNAPC3Q92966 411 aa16.4■□□□□ 0.22
USP40-215ENST00000484528 SPIN2AQ99865 258 aa16.4■□□□□ 0.22
USP40-215ENST00000484528 SPIN2BQ9BPZ2 258 aa16.4■□□□□ 0.22
USP40-215ENST00000484528 RNF167Q9H6Y7 350 aa16.4■□□□□ 0.22
USP40-215ENST00000484528 RHBDL2Q9NX52 303 aa16.4■□□□□ 0.22
USP40-215ENST00000484528 TAS2R8Q9NYW2 309 aa16.4■□□□□ 0.22
USP40-215ENST00000484528 ANXA10Q9UJ72 324 aa16.4■□□□□ 0.22
USP40-215ENST00000484528 SPATA2Q9UM82 520 aa16.4■□□□□ 0.22
USP40-215ENST00000484528 DNAH7Q8WXX0 4024 aa16.4■□□□□ 0.22
USP40-215ENST00000484528 FAM223BA6NKX1 122 aa16.39■□□□□ 0.21
USP40-215ENST00000484528 H0Y980 276 aa16.39■□□□□ 0.21
USP40-215ENST00000484528 CREBL2O60519 120 aaPredicted RBP16.39■□□□□ 0.21
USP40-215ENST00000484528 SDC2P34741 201 aa16.39■□□□□ 0.21
USP40-215ENST00000484528 ATP5G2Q06055 141 aa16.39■□□□□ 0.21
USP40-215ENST00000484528 TATDN3Q17R31 274 aa16.39■□□□□ 0.21
USP40-215ENST00000484528 TPRA1Q86W33 373 aa16.39■□□□□ 0.21
USP40-215ENST00000484528 FAM223AQ8IWN6 122 aa16.39■□□□□ 0.21
USP40-215ENST00000484528 FCGR1BQ92637 280 aa16.39■□□□□ 0.21
USP40-215ENST00000484528 OR2J3O76001 311 aa16.38■□□□□ 0.21
USP40-215ENST00000484528 SCGNO76038 276 aa16.38■□□□□ 0.21
USP40-215ENST00000484528 OR2A4O95047 310 aa16.38■□□□□ 0.21
USP40-215ENST00000484528 PTHLHP12272 177 aa16.38■□□□□ 0.21
USP40-215ENST00000484528 OR5H6Q8NGV6 325 aa16.38■□□□□ 0.21
USP40-215ENST00000484528 DYNC2H1Q8NCM8 4307 aaKnown RBP16.38■□□□□ 0.21
USP40-215ENST00000484528 TRBV9A0A0B4J1U6 114 aa16.37■□□□□ 0.21
USP40-215ENST00000484528 A8MZ25 164 aa16.37■□□□□ 0.21
USP40-215ENST00000484528 SLC22A5O76082 557 aa16.37■□□□□ 0.21
USP40-215ENST00000484528 FCER2P06734 321 aa16.37■□□□□ 0.21
USP40-215ENST00000484528 LYL1P12980 280 aa16.37■□□□□ 0.21
USP40-215ENST00000484528 ZFAND6Q6FIF0 208 aa16.37■□□□□ 0.21
USP40-215ENST00000484528 LCN12Q6JVE5 192 aa16.37■□□□□ 0.21
USP40-215ENST00000484528 TTC9CQ8N5M4 171 aa16.37■□□□□ 0.21
USP40-215ENST00000484528 OR4S2Q8NH73 311 aa16.37■□□□□ 0.21
USP40-215ENST00000484528 SLC25A38Q96DW6 304 aa16.37■□□□□ 0.21
USP40-215ENST00000484528 FYTTD1Q96QD9 318 aaKnown RBP16.37■□□□□ 0.21
USP40-215ENST00000484528 CITED4Q96RK1 184 aa16.37■□□□□ 0.21
USP40-215ENST00000484528 HSD17B10Q99714 261 aaKnown RBP16.37■□□□□ 0.21
USP40-215ENST00000484528 THAP7Q9BT49 309 aaPredicted RBP16.37■□□□□ 0.21
USP40-215ENST00000484528 PALMDQ9NP74 551 aa16.37■□□□□ 0.21
USP40-215ENST00000484528 TRAV18A0A075B6X5 111 aa16.36■□□□□ 0.21
USP40-215ENST00000484528 LOC100506127A0A0U1RQW1 187 aa16.36■□□□□ 0.21
USP40-215ENST00000484528 TEX22C9J3V5 150 aa16.36■□□□□ 0.21
USP40-215ENST00000484528 PPP5D1E7EU14 171 aa16.36■□□□□ 0.21
USP40-215ENST00000484528 KBTBD11O94819 623 aa16.36■□□□□ 0.21
USP40-215ENST00000484528 BRWD1-AS2P59051 145 aa16.36■□□□□ 0.21
USP40-215ENST00000484528 ARPC4P59998 168 aa16.36■□□□□ 0.21
USP40-215ENST00000484528 EIF4EBP1Q13541 118 aaPredicted RBP16.36■□□□□ 0.21
USP40-215ENST00000484528 C15orf32Q32M92 178 aa16.36■□□□□ 0.21
USP40-215ENST00000484528 SSX9Q7RTT3 188 aa16.36■□□□□ 0.21
USP40-215ENST00000484528 GTSCR1Q86UQ5 136 aa16.36■□□□□ 0.21
USP40-215ENST00000484528 Q8N402 240 aa16.36■□□□□ 0.21
USP40-215ENST00000484528 MFSD4AQ8N468 514 aa16.36■□□□□ 0.21
USP40-215ENST00000484528 GVQW1Q8N7I0 195 aa16.36■□□□□ 0.21
USP40-215ENST00000484528 NECAP1Q8NC96 275 aa16.36■□□□□ 0.21
USP40-215ENST00000484528 Q9H521 79 aa16.36■□□□□ 0.21
USP40-215ENST00000484528 GAR1Q9NY12 217 aaKnown RBP16.36■□□□□ 0.21
USP40-215ENST00000484528 PEMTQ9UBM1 199 aa16.36■□□□□ 0.21
USP40-215ENST00000484528 TNFSF12O43508 249 aa16.35■□□□□ 0.21
USP40-215ENST00000484528 HLA-AP01891 365 aaKnown RBP16.35■□□□□ 0.21
USP40-215ENST00000484528 IL6RP08887 468 aaPredicted RBP16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms