RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 ROBO3Q96MS0 1386 aa1.56□□□□□ -2.16
VPS41-207ENST00000439468 MYH7BA7E2Y1 1941 aa1.56□□□□□ -2.16
VPS41-207ENST00000439468 DCHS2Q6V1P9 2916 aa1.56□□□□□ -2.16
VPS41-207ENST00000439468 BIRC6Q9NR09 4857 aa1.56□□□□□ -2.16
VPS41-207ENST00000439468 COL6A5A8TX70 2615 aa1.55□□□□□ -2.16
VPS41-207ENST00000439468 ANK2Q01484 3957 aa1.55□□□□□ -2.16
VPS41-207ENST00000439468 TLN2Q9Y4G6 2542 aa1.55□□□□□ -2.16
VPS41-207ENST00000439468 PCLOQ9Y6V0 5065 aa1.55□□□□□ -2.16
VPS41-207ENST00000439468 EFCAB9A8MZ26 197 aa1.55□□□□□ -2.16
VPS41-207ENST00000439468 SH2D1AO60880 128 aa1.55□□□□□ -2.16
VPS41-207ENST00000439468 ASS1P00966 412 aaKnown RBP1.55□□□□□ -2.16
VPS41-207ENST00000439468 NPPAP01160 153 aa1.55□□□□□ -2.16
VPS41-207ENST00000439468 GABRA3P34903 492 aa1.55□□□□□ -2.16
VPS41-207ENST00000439468 DEFB103AP81534 67 aa1.55□□□□□ -2.16
VPS41-207ENST00000439468 TSPAN31Q12999 210 aa1.55□□□□□ -2.16
VPS41-207ENST00000439468 PMS2P3Q13401 168 aa1.55□□□□□ -2.16
VPS41-207ENST00000439468 MMDQ15546 238 aa1.55□□□□□ -2.16
VPS41-207ENST00000439468 OR4D1Q15615 310 aa1.55□□□□□ -2.16
VPS41-207ENST00000439468 C10orf91Q5T1B1 145 aa1.55□□□□□ -2.16
VPS41-207ENST00000439468 NOXRED1Q6NXP6 359 aa1.55□□□□□ -2.16
VPS41-207ENST00000439468 LYZL2Q7Z4W2 148 aa1.55□□□□□ -2.16
VPS41-207ENST00000439468 MUC15Q8N387 334 aa1.55□□□□□ -2.16
VPS41-207ENST00000439468 OR5D18Q8NGL1 313 aa1.55□□□□□ -2.16
VPS41-207ENST00000439468 OR9I1Q8NGQ6 314 aa1.55□□□□□ -2.16
VPS41-207ENST00000439468 OR11L1Q8NGX0 322 aa1.55□□□□□ -2.16
VPS41-207ENST00000439468 PHOSPHO2Q8TCD6 241 aa1.55□□□□□ -2.16
VPS41-207ENST00000439468 SPPL2BQ8TCT7 592 aa1.55□□□□□ -2.16
VPS41-207ENST00000439468 CMBLQ96DG6 245 aa1.55□□□□□ -2.16
VPS41-207ENST00000439468 RPUSD1Q9UJJ7 312 aaKnown RBP1.55□□□□□ -2.16
VPS41-207ENST00000439468 FADS3Q9Y5Q0 445 aa1.55□□□□□ -2.16
VPS41-207ENST00000439468 LCTP09848 1927 aa1.55□□□□□ -2.16
VPS41-207ENST00000439468 EVC2Q86UK5 1308 aa1.55□□□□□ -2.16
VPS41-207ENST00000439468 LAMA4Q16363 1823 aa1.54□□□□□ -2.16
VPS41-207ENST00000439468 PDCD11Q14690 1871 aaKnown RBP1.54□□□□□ -2.16
VPS41-207ENST00000439468 PRRC2CQ9Y520 2896 aaKnown RBP1.54□□□□□ -2.16
VPS41-207ENST00000439468 ACANP16112 2415 aa1.54□□□□□ -2.16
VPS41-207ENST00000439468 IQCF5A8MTL0 148 aa1.54□□□□□ -2.16
VPS41-207ENST00000439468 HSBP1L1C9JCN9 74 aa1.54□□□□□ -2.16
VPS41-207ENST00000439468 GUSBP08236 651 aa1.54□□□□□ -2.16
VPS41-207ENST00000439468 OR12D1P0DN82 309 aa1.54□□□□□ -2.16
VPS41-207ENST00000439468 ACTR1BP42025 376 aa1.54□□□□□ -2.16
VPS41-207ENST00000439468 SULT1A2P50226 295 aa1.54□□□□□ -2.16
VPS41-207ENST00000439468 KRTAP12-3P60328 96 aa1.54□□□□□ -2.16
VPS41-207ENST00000439468 SKP2Q13309 424 aa1.54□□□□□ -2.16
VPS41-207ENST00000439468 SYCP1Q15431 976 aa1.54□□□□□ -2.16
VPS41-207ENST00000439468 C2orf73Q8N5S3 287 aaPredicted RBP1.54□□□□□ -2.16
VPS41-207ENST00000439468 ZCCHC13Q8WW36 166 aaKnown RBP1.54□□□□□ -2.16
VPS41-207ENST00000439468 RORBQ92753 470 aa1.54□□□□□ -2.16
VPS41-207ENST00000439468 RAD51AP1Q96B01 352 aa1.54□□□□□ -2.16
VPS41-207ENST00000439468 CFAP53Q96M91 514 aa1.54□□□□□ -2.16
VPS41-207ENST00000439468 OR8B2Q96RD0 313 aa1.54□□□□□ -2.16
VPS41-207ENST00000439468 ACBD6Q9BR61 282 aa1.54□□□□□ -2.16
VPS41-207ENST00000439468 METTL8Q9H825 291 aaKnown RBP1.54□□□□□ -2.16
VPS41-207ENST00000439468 DMAC2Q9NW81 257 aa1.54□□□□□ -2.16
VPS41-207ENST00000439468 CHMP5Q9NZZ3 219 aa1.54□□□□□ -2.16
VPS41-207ENST00000439468 SCML1Q9UN30 329 aa1.54□□□□□ -2.16
VPS41-207ENST00000439468 MED23Q9ULK4 1368 aa1.54□□□□□ -2.16
VPS41-207ENST00000439468 MYLKQ15746 1914 aa1.54□□□□□ -2.16
VPS41-207ENST00000439468 CSPG4Q6UVK1 2322 aa1.54□□□□□ -2.16
VPS41-207ENST00000439468 ERICH2A1L162 156 aa1.53□□□□□ -2.16
VPS41-207ENST00000439468 TRPC5OSA6NMA1 111 aa1.53□□□□□ -2.16
VPS41-207ENST00000439468 K7EQS6 105 aa1.53□□□□□ -2.16
VPS41-207ENST00000439468 PSCAO43653 123 aa1.53□□□□□ -2.16
VPS41-207ENST00000439468 ADAP1O75689 374 aa1.53□□□□□ -2.16
VPS41-207ENST00000439468 SOX14O95416 240 aa1.53□□□□□ -2.16
VPS41-207ENST00000439468 LTAP01374 205 aa1.53□□□□□ -2.16
VPS41-207ENST00000439468 OPN1SWP03999 348 aa1.53□□□□□ -2.16
VPS41-207ENST00000439468 PSKH1P11801 424 aa1.53□□□□□ -2.16
VPS41-207ENST00000439468 AKR1C4P17516 323 aa1.53□□□□□ -2.16
VPS41-207ENST00000439468 HELZP42694 1942 aaKnown RBP1.53□□□□□ -2.16
VPS41-207ENST00000439468 INPP1P49441 399 aa1.53□□□□□ -2.16
VPS41-207ENST00000439468 SLAMF1Q13291 335 aa1.53□□□□□ -2.16
VPS41-207ENST00000439468 FOCADQ5VW36 1801 aa1.53□□□□□ -2.16
VPS41-207ENST00000439468 SDK1Q7Z5N4 2213 aa1.53□□□□□ -2.16
VPS41-207ENST00000439468 DEFB128Q7Z7B8 93 aa1.53□□□□□ -2.16
VPS41-207ENST00000439468 C17orf78Q8N4C9 275 aa1.53□□□□□ -2.16
VPS41-207ENST00000439468 YIPF7Q8N8F6 280 aa1.53□□□□□ -2.16
VPS41-207ENST00000439468 OR5C1Q8NGR4 320 aa1.53□□□□□ -2.16
VPS41-207ENST00000439468 DYNC2LI1Q8TCX1 351 aa1.53□□□□□ -2.16
VPS41-207ENST00000439468 HIST1H2BAQ96A08 127 aa1.53□□□□□ -2.16
VPS41-207ENST00000439468 HIGD2AQ9BW72 106 aa1.53□□□□□ -2.16
VPS41-207ENST00000439468 ZNF286AQ9HBT8 521 aa1.53□□□□□ -2.16
VPS41-207ENST00000439468 MRPL16Q9NX20 251 aaKnown RBP1.53□□□□□ -2.16
VPS41-207ENST00000439468 NSD1Q96L73 2696 aaPredicted RBP1.53□□□□□ -2.17
VPS41-207ENST00000439468 HIVEP2P31629 2446 aa1.52□□□□□ -2.17
VPS41-207ENST00000439468 NBASA2RRP1 2371 aa1.52□□□□□ -2.17
VPS41-207ENST00000439468 PLXNB1O43157 2135 aa1.52□□□□□ -2.17
VPS41-207ENST00000439468 PCDH15Q96QU1 1955 aa1.52□□□□□ -2.17
VPS41-207ENST00000439468 UBR4Q5T4S7 5183 aa1.52□□□□□ -2.17
VPS41-207ENST00000439468 MKRN2OSH3BPM6 223 aa1.52□□□□□ -2.17
VPS41-207ENST00000439468 KLRC4-KLRK1H3BQV0 150 aa1.52□□□□□ -2.17
VPS41-207ENST00000439468 J3QRE1 110 aa1.52□□□□□ -2.17
VPS41-207ENST00000439468 ZNF73O43830 326 aaPredicted RBP1.52□□□□□ -2.17
VPS41-207ENST00000439468 SCN2BO60939 215 aa1.52□□□□□ -2.17
VPS41-207ENST00000439468 CDS2O95674 445 aa1.52□□□□□ -2.17
VPS41-207ENST00000439468 ATF1P18846 271 aa1.52□□□□□ -2.17
VPS41-207ENST00000439468 CSRP1P21291 193 aaKnown RBP1.52□□□□□ -2.17
VPS41-207ENST00000439468 ADORA1P30542 326 aa1.52□□□□□ -2.17
VPS41-207ENST00000439468 KDELR2P33947 212 aa1.52□□□□□ -2.17
VPS41-207ENST00000439468 RCVRNP35243 200 aa1.52□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms