RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 SPIN3Q5JUX0 258 aa4.69□□□□□ -1.66
CSDE1-202ENST00000339438 ZNF468Q5VIY5 522 aaPredicted RBP4.69□□□□□ -1.66
CSDE1-202ENST00000339438 PRAMEF20Q5VT98 475 aa4.69□□□□□ -1.66
CSDE1-202ENST00000339438 LCN12Q6JVE5 192 aa4.69□□□□□ -1.66
CSDE1-202ENST00000339438 ZNF818PQ6ZRF7 136 aa4.69□□□□□ -1.66
CSDE1-202ENST00000339438 TBC1D26Q86UD7 250 aa4.69□□□□□ -1.66
CSDE1-202ENST00000339438 VASH2Q86V25 355 aa4.69□□□□□ -1.66
CSDE1-202ENST00000339438 FER1L6-AS1Q8NA97 138 aa4.69□□□□□ -1.66
CSDE1-202ENST00000339438 PATZ1Q9HBE1 687 aaKnown RBP4.69□□□□□ -1.66
CSDE1-202ENST00000339438 TUBG2Q9NRH3 451 aa4.69□□□□□ -1.66
CSDE1-202ENST00000339438 PLSCR4Q9NRQ2 329 aa4.69□□□□□ -1.66
CSDE1-202ENST00000339438 IGKV1-27A0A075B6S5 117 aa4.69□□□□□ -1.66
CSDE1-202ENST00000339438 TNFSF12-TNFSF13A0A0A6YY99 330 aa4.69□□□□□ -1.66
CSDE1-202ENST00000339438 H0YIG0 161 aa4.69□□□□□ -1.66
CSDE1-202ENST00000339438 K7EM74 188 aa4.69□□□□□ -1.66
CSDE1-202ENST00000339438 TNFSF12O43508 249 aa4.69□□□□□ -1.66
CSDE1-202ENST00000339438 TNFSF15O95150 251 aa4.69□□□□□ -1.66
CSDE1-202ENST00000339438 NXPH3O95157 252 aa4.69□□□□□ -1.66
CSDE1-202ENST00000339438 NAPSAO96009 420 aa4.69□□□□□ -1.66
CSDE1-202ENST00000339438 FXYD4P59646 89 aa4.69□□□□□ -1.66
CSDE1-202ENST00000339438 RPS18P62269 152 aaKnown RBP4.69□□□□□ -1.66
CSDE1-202ENST00000339438 HLA-DRB5Q30154 266 aa4.69□□□□□ -1.66
CSDE1-202ENST00000339438 OR10J3Q5JRS4 329 aa4.69□□□□□ -1.66
CSDE1-202ENST00000339438 EBLN2Q6P2I7 272 aa4.69□□□□□ -1.66
CSDE1-202ENST00000339438 ATOH7Q8N100 152 aa4.69□□□□□ -1.66
CSDE1-202ENST00000339438 ZDHHC11Q9H8X9 412 aa4.69□□□□□ -1.66
CSDE1-202ENST00000339438 DNAH1Q9P2D7 4330 aa4.69□□□□□ -1.66
CSDE1-202ENST00000339438 PSG11Q9UQ72 335 aa4.69□□□□□ -1.66
CSDE1-202ENST00000339438 CHD8Q9HCK8 2581 aa4.68□□□□□ -1.66
CSDE1-202ENST00000339438 MT-ATP6P00846 226 aa4.68□□□□□ -1.66
CSDE1-202ENST00000339438 RHOBP62745 196 aa4.68□□□□□ -1.66
CSDE1-202ENST00000339438 RSPO1Q2MKA7 263 aaPredicted RBP4.68□□□□□ -1.66
CSDE1-202ENST00000339438 KIAA1644Q3SXP7 199 aa4.68□□□□□ -1.66
CSDE1-202ENST00000339438 Q5PR19 223 aa4.68□□□□□ -1.66
CSDE1-202ENST00000339438 WDR73Q6P4I2 378 aa4.68□□□□□ -1.66
CSDE1-202ENST00000339438 UEVLDQ8IX04 471 aa4.68□□□□□ -1.66
CSDE1-202ENST00000339438 DEFB124Q8NES8 71 aa4.68□□□□□ -1.66
CSDE1-202ENST00000339438 TSKUQ8WUA8 353 aa4.68□□□□□ -1.66
CSDE1-202ENST00000339438 SPSB1Q96BD6 273 aa4.68□□□□□ -1.66
CSDE1-202ENST00000339438 IL36GQ9NZH8 169 aa4.68□□□□□ -1.66
CSDE1-202ENST00000339438 RNF212BA8MTL3 300 aa4.68□□□□□ -1.66
CSDE1-202ENST00000339438 ALG1L2C9J202 215 aa4.68□□□□□ -1.66
CSDE1-202ENST00000339438 ZNF324O75467 553 aaPredicted RBP4.68□□□□□ -1.66
CSDE1-202ENST00000339438 NRASP01111 189 aa4.68□□□□□ -1.66
CSDE1-202ENST00000339438 KRASP01116 189 aa4.68□□□□□ -1.66
CSDE1-202ENST00000339438 PPYP01298 95 aa4.68□□□□□ -1.66
CSDE1-202ENST00000339438 IGKV1-39P01597 117 aa4.68□□□□□ -1.66
CSDE1-202ENST00000339438 IGKV1D-39P04432 117 aa4.68□□□□□ -1.66
CSDE1-202ENST00000339438 EGR1P18146 543 aa4.68□□□□□ -1.66
CSDE1-202ENST00000339438 PGCP20142 388 aa4.68□□□□□ -1.66
CSDE1-202ENST00000339438 VAMP3Q15836 100 aa4.68□□□□□ -1.66
CSDE1-202ENST00000339438 ABCA11PQ4W5N1 156 aa4.68□□□□□ -1.66
CSDE1-202ENST00000339438 FAM120AOSQ5T036 256 aa4.68□□□□□ -1.66
CSDE1-202ENST00000339438 ST6GALNAC3Q8NDV1 305 aa4.68□□□□□ -1.66
CSDE1-202ENST00000339438 FAM103A1Q9BTL3 118 aaKnown RBP4.68□□□□□ -1.66
CSDE1-202ENST00000339438 CHODLQ9H9P2 273 aa4.68□□□□□ -1.66
CSDE1-202ENST00000339438 FRAS1Q86XX4 4008 aa4.68□□□□□ -1.66
CSDE1-202ENST00000339438 TRAV9-1A0A075B6T8 112 aa4.68□□□□□ -1.66
CSDE1-202ENST00000339438 TRAV9-2A0A087WT02 112 aa4.68□□□□□ -1.66
CSDE1-202ENST00000339438 IGKV1D-13A0A0B4J2D9 117 aa4.68□□□□□ -1.66
CSDE1-202ENST00000339438 PMS2P5A8MQ11 134 aa4.68□□□□□ -1.66
CSDE1-202ENST00000339438 H3BP45 60 aa4.68□□□□□ -1.66
CSDE1-202ENST00000339438 WISP2O76076 250 aa4.68□□□□□ -1.66
CSDE1-202ENST00000339438 CYC1P08574 325 aa4.68□□□□□ -1.66
CSDE1-202ENST00000339438 IGKV1-13P0DP09 117 aa4.68□□□□□ -1.66
CSDE1-202ENST00000339438 SCGB1A1P11684 91 aa4.68□□□□□ -1.66
CSDE1-202ENST00000339438 VDAC1P21796 283 aa4.68□□□□□ -1.66
CSDE1-202ENST00000339438 HLA-DQA1Q5Y7H0 255 aa4.68□□□□□ -1.66
CSDE1-202ENST00000339438 C5orf17Q8NAS9 161 aa4.68□□□□□ -1.66
CSDE1-202ENST00000339438 OR8B3Q8NGG8 313 aa4.68□□□□□ -1.66
CSDE1-202ENST00000339438 OR10V1Q8NGI7 309 aa4.68□□□□□ -1.66
CSDE1-202ENST00000339438 OR4F5Q8NH21 305 aa4.68□□□□□ -1.66
CSDE1-202ENST00000339438 LHX4Q969G2 390 aa4.68□□□□□ -1.66
CSDE1-202ENST00000339438 TMEM186Q96B77 213 aa4.68□□□□□ -1.66
CSDE1-202ENST00000339438 OR8B2Q96RD0 313 aa4.68□□□□□ -1.66
CSDE1-202ENST00000339438 TIMM9Q9Y5J7 89 aa4.68□□□□□ -1.66
CSDE1-202ENST00000339438 NCOR2Q9Y618 2525 aa4.67□□□□□ -1.66
CSDE1-202ENST00000339438 IGF2RP11717 2491 aa4.67□□□□□ -1.66
CSDE1-202ENST00000339438 MUC21A0A0G2JKD1 596 aa4.67□□□□□ -1.66
CSDE1-202ENST00000339438 MUC21A0A140T8X8 626 aa4.67□□□□□ -1.66
CSDE1-202ENST00000339438 NPIPB13A6NJU9 1138 aa4.67□□□□□ -1.66
CSDE1-202ENST00000339438 NPIPB4C9JG80 1138 aa4.67□□□□□ -1.66
CSDE1-202ENST00000339438 HMGB3O15347 200 aaKnown RBP4.67□□□□□ -1.66
CSDE1-202ENST00000339438 CRXO43186 299 aaPredicted RBP4.67□□□□□ -1.66
CSDE1-202ENST00000339438 S1PR2O95136 353 aa4.67□□□□□ -1.66
CSDE1-202ENST00000339438 SERPINA7P05543 415 aa4.67□□□□□ -1.66
CSDE1-202ENST00000339438 DEFA4P12838 97 aa4.67□□□□□ -1.66
CSDE1-202ENST00000339438 MLF1P58340 268 aa4.67□□□□□ -1.66
CSDE1-202ENST00000339438 RELBQ01201 579 aa4.67□□□□□ -1.66
CSDE1-202ENST00000339438 MUC21Q5SSG8 566 aa4.67□□□□□ -1.66
CSDE1-202ENST00000339438 ABHD12BQ7Z5M8 362 aaPredicted RBP4.67□□□□□ -1.66
CSDE1-202ENST00000339438 KIR3DL3Q8N743 410 aa4.67□□□□□ -1.66
CSDE1-202ENST00000339438 TCTEX1D1Q8N7M0 179 aa4.67□□□□□ -1.66
CSDE1-202ENST00000339438 SIGLECL1Q8N7X8 197 aa4.67□□□□□ -1.66
CSDE1-202ENST00000339438 OR1N2Q8NGR9 330 aa4.67□□□□□ -1.66
CSDE1-202ENST00000339438 TAF15Q92804 592 aaKnown RBP eCLIP4.67□□□□□ -1.66
CSDE1-202ENST00000339438 OR4C12Q96R67 309 aa4.67□□□□□ -1.66
CSDE1-202ENST00000339438 GNB1LQ9BYB4 327 aa4.67□□□□□ -1.66
CSDE1-202ENST00000339438 MOB1AQ9H8S9 216 aa4.67□□□□□ -1.66
CSDE1-202ENST00000339438 NPVFQ9HCQ7 196 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms