RNA–Protein interactions for RNA: YLR440C

SEC39, Transcript of Component of the Dsl1p tethering complex, yeast

Gene SEC39, Length 2,130 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SEC39	YLR440C	HTZ1	Q12692	134 aa	Known RBP	5.2	□□□□□ -1.58
SEC39	YLR440C	RPO41	P13433	1351 aa	Known RBP	5.19	□□□□□ -1.58
SEC39	YLR440C	YLR358C	O13565	187 aa		5.19	□□□□□ -1.58
SEC39	YLR440C	RPP2B	P02400	110 aa	Known RBP	5.19	□□□□□ -1.58
SEC39	YLR440C	REP1	P03871	373 aa		5.19	□□□□□ -1.58
SEC39	YLR440C	SIR3	P06701	978 aa		5.19	□□□□□ -1.58
SEC39	YLR440C	RSR1	P13856	272 aa		5.19	□□□□□ -1.58
SEC39	YLR440C	NMT1	P14743	455 aa		5.19	□□□□□ -1.58
SEC39	YLR440C	PRP16	P15938	1071 aa	Predicted RBP	5.19	□□□□□ -1.58
SEC39	YLR440C	FUS3	P16892	353 aa	Known RBP	5.19	□□□□□ -1.58
SEC39	YLR440C	DBF2	P22204	572 aa		5.19	□□□□□ -1.58
SEC39	YLR440C	CLB3	P24870	427 aa		5.19	□□□□□ -1.58
SEC39	YLR440C	RMA1	P36001	430 aa	Known RBP	5.19	□□□□□ -1.58
SEC39	YLR440C	RAD55	P38953	406 aa		5.19	□□□□□ -1.58
SEC39	YLR440C	TAT2	P38967	592 aa		5.19	□□□□□ -1.58
SEC39	YLR440C	BDH2	P39713	417 aa		5.19	□□□□□ -1.58
SEC39	YLR440C	THO1	P40040	218 aa	Known RBP	5.19	□□□□□ -1.58
SEC39	YLR440C	FKH1	P40466	484 aa		5.19	□□□□□ -1.58
SEC39	YLR440C	MAD3	P47074	515 aa		5.19	□□□□□ -1.58
SEC39	YLR440C	STR2	P47164	639 aa		5.19	□□□□□ -1.58
SEC39	YLR440C	MNT2	P53059	558 aa		5.19	□□□□□ -1.58
SEC39	YLR440C	MRPL50	P53724	139 aa		5.19	□□□□□ -1.58
SEC39	YLR440C	BRE5	P53741	515 aa	Known RBP	5.19	□□□□□ -1.58
SEC39	YLR440C	RMI1	Q02685	241 aa		5.19	□□□□□ -1.58
SEC39	YLR440C	MMR1	Q06324	491 aa		5.19	□□□□□ -1.58
SEC39	YLR440C	ATP16	Q12165	160 aa		5.19	□□□□□ -1.58
SEC39	YLR440C	TRP3	P00937	484 aa		5.18	□□□□□ -1.58
SEC39	YLR440C	ALG1	P16661	449 aa		5.18	□□□□□ -1.58
SEC39	YLR440C	DAP2	P18962	818 aa		5.18	□□□□□ -1.58
SEC39	YLR440C	RET1	P22276	1149 aa	Known RBP	5.18	□□□□□ -1.58
SEC39	YLR440C	RPI1	P23250	407 aa	Known RBP	5.18	□□□□□ -1.58
SEC39	YLR440C	MSP1	P28737	362 aa		5.18	□□□□□ -1.58
SEC39	YLR440C	CAF4	P36130	643 aa		5.18	□□□□□ -1.58
SEC39	YLR440C	SOH1	P38633	127 aa		5.18	□□□□□ -1.58
SEC39	YLR440C	STP2	P38704	541 aa		5.18	□□□□□ -1.58
SEC39	YLR440C	STL1	P39932	569 aa		5.18	□□□□□ -1.58
SEC39	YLR440C	KHA1	P40309	873 aa		5.18	□□□□□ -1.58
SEC39	YLR440C	YIL077C	P40508	320 aa		5.18	□□□□□ -1.58
SEC39	YLR440C	AXL1	P40851	1208 aa		5.18	□□□□□ -1.58
SEC39	YLR440C	YNR061C	P53747	219 aa		5.18	□□□□□ -1.58
SEC39	YLR440C	DSE4	P53753	1117 aa		5.18	□□□□□ -1.58
SEC39	YLR440C	MRPS17	Q03246	237 aa	Predicted RBP	5.18	□□□□□ -1.58
SEC39	YLR440C	UFO1	Q04511	668 aa		5.18	□□□□□ -1.58
SEC39	YLR440C	VAC14	Q06708	880 aa		5.18	□□□□□ -1.58
SEC39	YLR440C	NOP12	Q08208	459 aa	Known RBP	5.18	□□□□□ -1.58
SEC39	YLR440C	CAR2	P07991	424 aa	Known RBP	5.18	□□□□□ -1.58
SEC39	YLR440C	PFK2	P16862	959 aa	Known RBP RIP-Chip data	5.18	□□□□□ -1.58	not detected
SEC39	YLR440C	KCC4	P25389	1037 aa		5.18	□□□□□ -1.58
SEC39	YLR440C	RAM2	P29703	316 aa		5.18	□□□□□ -1.58
SEC39	YLR440C	DBF20	P32328	564 aa		5.18	□□□□□ -1.58
SEC39	YLR440C	RPT1	P33299	467 aa	Known RBP	5.18	□□□□□ -1.58
SEC39	YLR440C	GDH2	P33327	1092 aa	Known RBP	5.18	□□□□□ -1.58
SEC39	YLR440C	LOT5	P34234	306 aa		5.18	□□□□□ -1.58
SEC39	YLR440C	BCH2	P36122	765 aa		5.18	□□□□□ -1.58
SEC39	YLR440C	GDT1	P38301	280 aa	Predicted RBP	5.18	□□□□□ -1.58
SEC39	YLR440C	YHI9	P38765	294 aa		5.18	□□□□□ -1.58
SEC39	YLR440C	MNL1	P38888	796 aa		5.18	□□□□□ -1.58
SEC39	YLR440C	PRM9	P39551	298 aa		5.18	□□□□□ -1.58
SEC39	YLR440C	EAF6	P47128	113 aa		5.18	□□□□□ -1.58
SEC39	YLR440C	CSN12	P47130	423 aa		5.18	□□□□□ -1.58
SEC39	YLR440C	MTO1	P53070	669 aa		5.18	□□□□□ -1.58
SEC39	YLR440C	KRE33	P53914	1056 aa	Known RBP	5.18	□□□□□ -1.58
SEC39	YLR440C	YNL034W	P53963	612 aa		5.18	□□□□□ -1.58
SEC39	YLR440C	YNL018C	P53976	612 aa		5.18	□□□□□ -1.58
SEC39	YLR440C	EAR1	Q03212	550 aa		5.18	□□□□□ -1.58
SEC39	YLR440C	KAP95	Q06142	861 aa	Known RBP	5.18	□□□□□ -1.58
SEC39	YLR440C	DTD1	Q07648	150 aa	Known RBP	5.18	□□□□□ -1.58
SEC39	YLR440C	NTG2	Q08214	380 aa		5.18	□□□□□ -1.58
SEC39	YLR440C	SNF1	P06782	633 aa	Known RBP	5.17	□□□□□ -1.58
SEC39	YLR440C	ARD1	P07347	238 aa	Predicted RBP	5.17	□□□□□ -1.58
SEC39	YLR440C	GRR1	P24814	1151 aa		5.17	□□□□□ -1.58
SEC39	YLR440C	SIS1	P25294	352 aa	Known RBP	5.17	□□□□□ -1.58
SEC39	YLR440C	KRE2	P27809	442 aa		5.17	□□□□□ -1.58
SEC39	YLR440C	ICL1	P28240	557 aa	Predicted RBP	5.17	□□□□□ -1.58
SEC39	YLR440C	ITR2	P30606	609 aa		5.17	□□□□□ -1.58
SEC39	YLR440C	ZIP1	P31111	875 aa		5.17	□□□□□ -1.58
SEC39	YLR440C	EFT1	P32324	842 aa	Known RBP	5.17	□□□□□ -1.58
SEC39	YLR440C	DBF4	P32325	704 aa		5.17	□□□□□ -1.58
SEC39	YLR440C	SFP1	P32432	683 aa		5.17	□□□□□ -1.58
SEC39	YLR440C	RIM4	P38741	713 aa		5.17	□□□□□ -1.58
SEC39	YLR440C	QDR2	P40474	542 aa		5.17	□□□□□ -1.58
SEC39	YLR440C	VID28	P40547	921 aa		5.17	□□□□□ -1.58
SEC39	YLR440C	TEL2	P53038	688 aa		5.17	□□□□□ -1.58
SEC39	YLR440C	PEF1	P53238	335 aa		5.17	□□□□□ -1.58
SEC39	YLR440C	PDR8	Q06149	701 aa		5.17	□□□□□ -1.58
SEC39	YLR440C	ATG13	Q06628	738 aa		5.17	□□□□□ -1.58
SEC39	YLR440C	NDE2	Q07500	545 aa		5.17	□□□□□ -1.58
SEC39	YLR440C	RRT8	Q08219	342 aa		5.17	□□□□□ -1.58
SEC39	YLR440C	YDL109C	Q12103	647 aa		5.17	□□□□□ -1.58
SEC39	YLR440C	BI4	P03879	638 aa		5.17	□□□□□ -1.58
SEC39	YLR440C	PRP2	P20095	876 aa	Predicted RBP	5.17	□□□□□ -1.58
SEC39	YLR440C	DBP3	P20447	523 aa	Known RBP	5.17	□□□□□ -1.58
SEC39	YLR440C	DPB2	P24482	689 aa	Predicted RBP	5.17	□□□□□ -1.58
SEC39	YLR440C	GRX1	P25373	110 aa	Known RBP	5.17	□□□□□ -1.58
SEC39	YLR440C	NPL6	P32832	435 aa		5.17	□□□□□ -1.58
SEC39	YLR440C	MDL1	P33310	695 aa		5.17	□□□□□ -1.58
SEC39	YLR440C	MNN2	P38069	597 aa		5.17	□□□□□ -1.58
SEC39	YLR440C	APM3	P38153	483 aa		5.17	□□□□□ -1.58
SEC39	YLR440C	MMS4	P38257	691 aa		5.17	□□□□□ -1.58
SEC39	YLR440C	TOS1	P38288	455 aa		5.17	□□□□□ -1.58

Retrieved 100 of 5,963 RNA–protein pairs in 15.4 ms