RNA–Protein interactions for RNA: YDR494W

RSM28, Transcript of Mitochondrial ribosomal protein of the small subunit, yeast

Gene RSM28, Length 1,086 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RSM28	YDR494W	BFA1	P47113	574 aa		4.15	□□□□□ -1.75
RSM28	YDR494W	YGR237C	P50089	785 aa		4.15	□□□□□ -1.75
RSM28	YDR494W	YGL081W	P53156	320 aa		4.15	□□□□□ -1.75
RSM28	YDR494W	RCR2	Q03446	210 aa	Known RBP	4.15	□□□□□ -1.75
RSM28	YDR494W	VBA4	Q04602	768 aa	Known RBP	4.15	□□□□□ -1.75
RSM28	YDR494W	ARG7	Q04728	441 aa		4.15	□□□□□ -1.75
RSM28	YDR494W	RPS9B	P05755	195 aa	Known RBP	4.14	□□□□□ -1.75
RSM28	YDR494W	MBR1	P23493	339 aa		4.14	□□□□□ -1.75
RSM28	YDR494W	YKR075C	P36155	307 aa		4.14	□□□□□ -1.75
RSM28	YDR494W	CCT5	P40413	562 aa	Known RBP	4.14	□□□□□ -1.75
RSM28	YDR494W	RET2	P43621	546 aa		4.14	□□□□□ -1.75
RSM28	YDR494W	MTQ2	Q03920	221 aa	Predicted RBP	4.14	□□□□□ -1.75
RSM28	YDR494W	STE4	P18851	423 aa		4.13	□□□□□ -1.75
RSM28	YDR494W	YKU70	P32807	602 aa		4.13	□□□□□ -1.75
RSM28	YDR494W	HOT13	P36078	116 aa		4.13	□□□□□ -1.75
RSM28	YDR494W	YGR153W	P48238	217 aa		4.13	□□□□□ -1.75
RSM28	YDR494W	YGL117W	P53133	265 aa		4.13	□□□□□ -1.75
RSM28	YDR494W	CPR8	P53728	308 aa		4.13	□□□□□ -1.75
RSM28	YDR494W	YMR210W	Q03649	449 aa		4.13	□□□□□ -1.75
RSM28	YDR494W	YLR407W	Q06070	228 aa		4.13	□□□□□ -1.75
RSM28	YDR494W	FAP7	Q12055	197 aa	Predicted RBP	4.13	□□□□□ -1.75
RSM28	YDR494W	RGT2	Q12300	763 aa		4.13	□□□□□ -1.75
RSM28	YDR494W	IME1	P21190	360 aa		4.12	□□□□□ -1.75
RSM28	YDR494W	UBP12	P39538	1254 aa		4.12	□□□□□ -1.75
RSM28	YDR494W	DAK1	P54838	584 aa	Known RBP	4.12	□□□□□ -1.75
RSM28	YDR494W	AI5_ALPHA	Q9ZZX1	630 aa		4.12	□□□□□ -1.75
RSM28	YDR494W	PRP22	P24384	1145 aa	Known RBP	4.11	□□□□□ -1.75
RSM28	YDR494W	AAD3	P25612	363 aa		4.11	□□□□□ -1.75
RSM28	YDR494W	GZF3	P42944	551 aa	Known RBP	4.11	□□□□□ -1.75
RSM28	YDR494W	PIP2	P52960	996 aa		4.11	□□□□□ -1.75
RSM28	YDR494W	GPG1	P53130	126 aa		4.11	□□□□□ -1.75
RSM28	YDR494W	YPS7	Q06325	596 aa		4.11	□□□□□ -1.75
RSM28	YDR494W	YTM1	Q12024	460 aa	Predicted RBP	4.11	□□□□□ -1.75
RSM28	YDR494W	LEU2	P04173	364 aa	Predicted RBP	4.1	□□□□□ -1.75
RSM28	YDR494W	TSR4	P25040	408 aa		4.1	□□□□□ -1.75
RSM28	YDR494W	YEN1	P40028	759 aa		4.1	□□□□□ -1.75
RSM28	YDR494W	GPP1	P41277	250 aa	Known RBP	4.1	□□□□□ -1.75
RSM28	YDR494W	BUD8	P41698	603 aa		4.1	□□□□□ -1.75
RSM28	YDR494W	PXA1	P41909	870 aa		4.1	□□□□□ -1.75
RSM28	YDR494W	TRS23	Q03784	219 aa		4.1	□□□□□ -1.75
RSM28	YDR494W	GRX4	P32642	244 aa		4.09	□□□□□ -1.75
RSM28	YDR494W	OAF1	P39720	1047 aa	Predicted RBP	4.09	□□□□□ -1.75
RSM28	YDR494W	TMN3	P40071	706 aa		4.09	□□□□□ -1.75
RSM28	YDR494W	ULP2	P40537	1034 aa	Predicted RBP	4.09	□□□□□ -1.75
RSM28	YDR494W	SWI6	P09959	803 aa		4.08	□□□□□ -1.76
RSM28	YDR494W	MNN11	P46985	422 aa	Known RBP	4.08	□□□□□ -1.76
RSM28	YDR494W	SPO1	P53541	631 aa		4.08	□□□□□ -1.76
RSM28	YDR494W	MPS1	P54199	764 aa		4.08	□□□□□ -1.76
RSM28	YDR494W	ECM9	Q02202	377 aa		4.08	□□□□□ -1.76
RSM28	YDR494W	YHM2	Q04013	314 aa		4.08	□□□□□ -1.76
RSM28	YDR494W	PMA2	P19657	947 aa		4.07	□□□□□ -1.76
RSM28	YDR494W	SEC65	P29478	273 aa		4.07	□□□□□ -1.76
RSM28	YDR494W	DID4	P36108	232 aa		4.07	□□□□□ -1.76
RSM28	YDR494W	RIM4	P38741	713 aa		4.07	□□□□□ -1.76
RSM28	YDR494W	THI6	P41835	540 aa		4.07	□□□□□ -1.76
RSM28	YDR494W	PTA1	Q01329	785 aa	Predicted RBP	4.07	□□□□□ -1.76
RSM28	YDR494W	FDC1	Q03034	503 aa		4.07	□□□□□ -1.76
RSM28	YDR494W	PPN1	Q04119	674 aa		4.07	□□□□□ -1.76
RSM28	YDR494W	STP4	Q07351	490 aa		4.07	□□□□□ -1.76
RSM28	YDR494W	ZPS1	Q12512	249 aa		4.07	□□□□□ -1.76
RSM28	YDR494W	RPS21B	Q3E754	87 aa	Known RBP	4.07	□□□□□ -1.76
RSM28	YDR494W	PIH1	P38768	344 aa		4.06	□□□□□ -1.76
RSM28	YDR494W	PPE1	P38796	400 aa		4.06	□□□□□ -1.76
RSM28	YDR494W	HXT6	P39003	570 aa	Known RBP	4.06	□□□□□ -1.76
RSM28	YDR494W	HXT7	P39004	570 aa		4.06	□□□□□ -1.76
RSM28	YDR494W	YIP4	P53093	235 aa		4.06	□□□□□ -1.76
RSM28	YDR494W	STP1	Q00947	519 aa		4.06	□□□□□ -1.76
RSM28	YDR494W	RPS17A	P02407	136 aa	Known RBP	4.05	□□□□□ -1.76
RSM28	YDR494W	RPL7A	P05737	244 aa	Known RBP	4.05	□□□□□ -1.76
RSM28	YDR494W	RPS17B	P14127	136 aa	Known RBP	4.05	□□□□□ -1.76
RSM28	YDR494W	PRE4	P30657	266 aa		4.05	□□□□□ -1.76
RSM28	YDR494W	MRPL7	P36519	292 aa		4.05	□□□□□ -1.76
RSM28	YDR494W	CRG1	P38892	291 aa	RIP-Chip data	4.05	□□□□□ -1.76	not detected
RSM28	YDR494W	PSA1	P41940	361 aa	Known RBP	4.05	□□□□□ -1.76
RSM28	YDR494W	SCS3	P53012	380 aa		4.05	□□□□□ -1.76
RSM28	YDR494W	EFR3	Q03653	782 aa	Known RBP	4.05	□□□□□ -1.76
RSM28	YDR494W	CIR2	Q08822	631 aa		4.05	□□□□□ -1.76
RSM28	YDR494W	HFI1	Q12060	488 aa		4.05	□□□□□ -1.76
RSM28	YDR494W	RPL7B	Q12213	244 aa	Known RBP	4.05	□□□□□ -1.76
RSM28	YDR494W	FRE7	Q12333	620 aa		4.05	□□□□□ -1.76
RSM28	YDR494W	CPA2	P03965	1118 aa	Known RBP	4.04	□□□□□ -1.76
RSM28	YDR494W	RPS21A	P0C0V8	87 aa	Known RBP	4.04	□□□□□ -1.76
RSM28	YDR494W	CNE1	P27825	502 aa		4.04	□□□□□ -1.76
RSM28	YDR494W	OAF3	P36023	863 aa		4.04	□□□□□ -1.76
RSM28	YDR494W	DUN1	P39009	513 aa		4.04	□□□□□ -1.76
RSM28	YDR494W	FTR1	P40088	404 aa		4.04	□□□□□ -1.76
RSM28	YDR494W	BPL1	P48445	690 aa	Predicted RBP	4.04	□□□□□ -1.76
RSM28	YDR494W	YGR054W	P53235	642 aa	Known RBP	4.04	□□□□□ -1.76
RSM28	YDR494W	NOP15	P53927	220 aa	Predicted RBP	4.04	□□□□□ -1.76
RSM28	YDR494W	MFM1	Q02783	413 aa		4.04	□□□□□ -1.76
RSM28	YDR494W	CEF1	Q03654	590 aa	Predicted RBP	4.04	□□□□□ -1.76
RSM28	YDR494W	ORM2	Q06144	216 aa		4.04	□□□□□ -1.76
RSM28	YDR494W	IRC3	Q06683	689 aa		4.04	□□□□□ -1.76
RSM28	YDR494W	TUP1	P16649	713 aa		4.03	□□□□□ -1.76
RSM28	YDR494W	YUR1	P26725	428 aa		4.03	□□□□□ -1.76
RSM28	YDR494W	CDS1	P38221	457 aa		4.03	□□□□□ -1.76
RSM28	YDR494W	FAT1	P38225	669 aa		4.03	□□□□□ -1.76
RSM28	YDR494W	DUG1	P43616	481 aa	Known RBP	4.03	□□□□□ -1.76
RSM28	YDR494W	ATG36	P46983	293 aa		4.03	□□□□□ -1.76
RSM28	YDR494W	TAF4	P50105	388 aa		4.03	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 31.3 ms