RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 RRP7BPQ9NSQ0 103 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 ATAD2Q6PL18 1390 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 MAST3O60307 1309 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 UBXN8O00124 270 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 U2AF1L5P0DN76 240 aaPredicted RBP3.12□□□□□ -1.91
SCN1A-219ENST00000641575 PSMC4P43686 418 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 U2AF1Q01081 240 aaKnown RBP eCLIP3.12□□□□□ -1.91
SCN1A-219ENST00000641575 LARP1Q6PKG0 1096 aaKnown RBP3.12□□□□□ -1.91
SCN1A-219ENST00000641575 CCDC170Q8IYT3 715 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 RNF41Q9H4P4 317 aaPredicted RBP3.12□□□□□ -1.91
SCN1A-219ENST00000641575 NR2E3Q9Y5X4 410 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 PARP3Q9Y6F1 533 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 MYOFQ9NZM1 2061 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 SFPQP23246 707 aaKnown RBP eCLIP3.12□□□□□ -1.91
SCN1A-219ENST00000641575 FKBP5Q13451 457 aaPredicted RBP3.12□□□□□ -1.91
SCN1A-219ENST00000641575 SLC4A8Q2Y0W8 1093 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 NAA16Q6N069 864 aaPredicted RBP3.12□□□□□ -1.91
SCN1A-219ENST00000641575 MICALL1Q8N3F8 863 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 BBS5Q8N3I7 341 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 ABTB2Q8N961 1025 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 ZC3H12CQ9C0D7 883 aaKnown RBP3.12□□□□□ -1.91
SCN1A-219ENST00000641575 TPX2Q9ULW0 747 aaKnown RBP3.12□□□□□ -1.91
SCN1A-219ENST00000641575 CCDC171Q6TFL3 1326 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 IFIT1P09914 478 aaKnown RBP3.12□□□□□ -1.91
SCN1A-219ENST00000641575 CCNA1P78396 465 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 RAB3GAP1Q15042 981 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 RBM46Q8TBY0 533 aaKnown RBP3.12□□□□□ -1.91
SCN1A-219ENST00000641575 VCX3BQ9H321 246 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 PRDM11Q9NQV5 511 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 STK32BQ9NY57 414 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 CTNNA3Q9UI47 895 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 FARP1Q9Y4F1 1045 aaPredicted RBP3.12□□□□□ -1.91
SCN1A-219ENST00000641575 MYOM3Q5VTT5 1437 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 FIBPO43427 364 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 XPOTO43592 962 aaKnown RBP3.12□□□□□ -1.91
SCN1A-219ENST00000641575 MCM5P33992 734 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 VPS41P49754 854 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 DNM2P50570 870 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 NEK1Q96PY6 1258 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 STMN4Q9H169 189 aaPredicted RBP3.12□□□□□ -1.91
SCN1A-219ENST00000641575 ANKFY1Q9P2R3 1169 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 POTEB3A0JP26 581 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 MACROD2A1Z1Q3 448 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 EBAG9O00559 213 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 KDM1AO60341 852 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 HSF2BPO75031 334 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 CAVIN2O95810 425 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 CHMP4BP1P59074 171 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 ASPHQ12797 758 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 CCDC30Q5VVM6 783 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 POTEBQ6S5H4 581 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 B4GALNT4Q76KP1 1039 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 CCDC26Q8TAB7 109 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 HAUS8Q9BT25 410 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 ZSCAN12O43309 604 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 RASEFQ8IZ41 740 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 OTUD6BQ8N6M0 293 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 FSD1Q9BTV5 496 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 TMOD3Q9NYL9 352 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 PRR14LQ5THK1 2151 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 ERICH3Q5RHP9 1530 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 ZMYM4Q5VZL5 1548 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 PTPAQ15257 358 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 ERCC6LQ2NKX8 1250 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 SMAP1Q8IYB5 467 aaPredicted RBP3.12□□□□□ -1.91
SCN1A-219ENST00000641575 STMN2Q93045 179 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 CARD10Q9BWT7 1032 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 FAM95CA0A1B0GW59 222 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 GCKP35557 465 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 PIK3R5Q8WYR1 880 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 TTC14Q96N46 770 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 RPS6KC1Q96S38 1066 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 NUF2Q9BZD4 464 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 STRN4Q9NRL3 753 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 EFCAB8A8MWE9 144 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 GRIN3BO60391 1043 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 CCDC129Q6ZRS4 1044 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 SULF1Q8IWU6 871 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 ERMNQ8TAM6 284 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 ZBED2Q9BTP6 218 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 NAA15Q9BXJ9 866 aaKnown RBP3.11□□□□□ -1.91
SCN1A-219ENST00000641575 POLR1AO95602 1720 aaPredicted RBP3.11□□□□□ -1.91
SCN1A-219ENST00000641575 UBAP1LF5GYI3 381 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 ATICP31939 592 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 BICDL1Q6ZP65 573 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 ARHGAP30Q7Z6I6 1101 aaPredicted RBP3.11□□□□□ -1.91
SCN1A-219ENST00000641575 DCAF11Q8TEB1 546 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 NEUROD6Q96NK8 337 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 CUEDC2Q9H467 287 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 SYNCQ9H7C4 482 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 PHAXQ9H814 394 aaKnown RBP3.11□□□□□ -1.91
SCN1A-219ENST00000641575 PFDN1O60925 122 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 RPAINQ86UA6 219 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 MPNDQ8N594 471 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 IFT74Q96LB3 600 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 IRAK4Q9NWZ3 460 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 A6NNZ2 444 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 ECE1P42892 770 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 MCM2P49736 904 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 NLRP5P59047 1200 aa3.11□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms