RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 TMC7Q7Z402 723 aa8.27□□□□□ -1.09
CD44-239ENST00000639002 C12orf50Q8NA57 414 aaPredicted RBP8.27□□□□□ -1.09
CD44-239ENST00000639002 TMC1Q8TDI8 760 aa8.27□□□□□ -1.09
CD44-239ENST00000639002 EPS8L3Q8TE67 593 aaKnown RBP8.27□□□□□ -1.09
CD44-239ENST00000639002 KCNF1Q9H3M0 494 aa8.27□□□□□ -1.09
CD44-239ENST00000639002 B3GALT4O96024 378 aa8.26□□□□□ -1.09
CD44-239ENST00000639002 MAOBP27338 520 aa8.26□□□□□ -1.09
CD44-239ENST00000639002 DMRTB1Q96MA1 342 aa8.26□□□□□ -1.09
CD44-239ENST00000639002 CYP4F12Q9HCS2 524 aa8.26□□□□□ -1.09
CD44-239ENST00000639002 HIF3AQ9Y2N7 669 aa8.26□□□□□ -1.09
CD44-239ENST00000639002 MAP4P27816 1152 aaKnown RBP8.25□□□□□ -1.09
CD44-239ENST00000639002 CDPF1Q6NVV7 123 aa8.25□□□□□ -1.09
CD44-239ENST00000639002 PRPF40BQ6NWY9 871 aaKnown RBP8.25□□□□□ -1.09
CD44-239ENST00000639002 SHISA5Q8N114 240 aa8.25□□□□□ -1.09
CD44-239ENST00000639002 C2CD4AQ8NCU7 369 aaPredicted RBP8.25□□□□□ -1.09
CD44-239ENST00000639002 DBNDD2Q9BQY9 259 aa8.25□□□□□ -1.09
CD44-239ENST00000639002 SOX4Q06945 474 aaPredicted RBP8.24□□□□□ -1.09
CD44-239ENST00000639002 GRM2Q14416 872 aa8.24□□□□□ -1.09
CD44-239ENST00000639002 DSC3Q14574 896 aa8.24□□□□□ -1.09
CD44-239ENST00000639002 POU4F3Q15319 338 aa8.24□□□□□ -1.09
CD44-239ENST00000639002 PI16Q6UXB8 463 aa8.24□□□□□ -1.09
CD44-239ENST00000639002 NBPF11Q86T75 865 aa8.24□□□□□ -1.09
CD44-239ENST00000639002 KRTAP4-8Q9BYQ9 185 aa8.24□□□□□ -1.09
CD44-239ENST00000639002 TMEM238LA0A1B0GVL6 79 aa8.23□□□□□ -1.09
CD44-239ENST00000639002 GAS2O43903 313 aaKnown RBP8.23□□□□□ -1.09
CD44-239ENST00000639002 PTPN12Q05209 780 aaKnown RBP8.23□□□□□ -1.09
CD44-239ENST00000639002 FAAP100Q0VG06 881 aa8.23□□□□□ -1.09
CD44-239ENST00000639002 SHKBP1Q8TBC3 707 aa8.23□□□□□ -1.09
CD44-239ENST00000639002 DCTN4Q9UJW0 460 aa8.23□□□□□ -1.09
CD44-239ENST00000639002 KIAA1324LA8MWY0 1029 aaPredicted RBP8.22□□□□□ -1.09
CD44-239ENST00000639002 GADD45BO75293 160 aaPredicted RBP8.22□□□□□ -1.09
CD44-239ENST00000639002 CYP11A1P05108 521 aa8.22□□□□□ -1.09
CD44-239ENST00000639002 FBLIM1Q8WUP2 373 aa8.22□□□□□ -1.09
CD44-239ENST00000639002 PCMTD2Q9NV79 361 aa8.22□□□□□ -1.09
CD44-239ENST00000639002 BIN2Q9UBW5 565 aaPredicted RBP8.22□□□□□ -1.09
CD44-239ENST00000639002 COBLO75128 1261 aa8.21□□□□□ -1.1
CD44-239ENST00000639002 ADAMTS4O75173 837 aa8.21□□□□□ -1.1
CD44-239ENST00000639002 ADH5P11766 374 aa8.21□□□□□ -1.1
CD44-239ENST00000639002 MFSD14AQ96MC6 490 aa8.21□□□□□ -1.1
CD44-239ENST00000639002 EIF4EBP3O60516 100 aaPredicted RBP8.2□□□□□ -1.1
CD44-239ENST00000639002 F13BP05160 661 aa8.2□□□□□ -1.1
CD44-239ENST00000639002 ZNF157P51786 506 aaPredicted RBP8.2□□□□□ -1.1
CD44-239ENST00000639002 EZH1Q92800 747 aaPredicted RBP8.2□□□□□ -1.1
CD44-239ENST00000639002 ACTL7BQ9Y614 415 aa8.2□□□□□ -1.1
CD44-239ENST00000639002 WDR64B1ANS9 1081 aa8.19□□□□□ -1.1
CD44-239ENST00000639002 TREHO43280 583 aa8.19□□□□□ -1.1
CD44-239ENST00000639002 RXRBP28702 533 aa8.19□□□□□ -1.1
CD44-239ENST00000639002 HOXA10P31260 410 aaPredicted RBP8.19□□□□□ -1.1
CD44-239ENST00000639002 RPS26P11Q5JNZ5 115 aaPredicted RBP8.19□□□□□ -1.1
CD44-239ENST00000639002 GSX1Q9H4S2 264 aaPredicted RBP8.19□□□□□ -1.1
CD44-239ENST00000639002 FAM95CA0A1B0GW59 222 aa8.18□□□□□ -1.1
CD44-239ENST00000639002 SPINK2P20155 84 aa8.18□□□□□ -1.1
CD44-239ENST00000639002 MAPK1P28482 360 aa8.18□□□□□ -1.1
CD44-239ENST00000639002 ADMP35318 185 aa8.18□□□□□ -1.1
CD44-239ENST00000639002 USP11P51784 963 aa8.18□□□□□ -1.1
CD44-239ENST00000639002 PLCB3Q01970 1234 aa8.18□□□□□ -1.1
CD44-239ENST00000639002 NFKBIBQ15653 356 aa8.18□□□□□ -1.1
CD44-239ENST00000639002 PSMG3-AS1Q96PY0 264 aa8.18□□□□□ -1.1
CD44-239ENST00000639002 CORO1BQ9BR76 489 aa8.18□□□□□ -1.1
CD44-239ENST00000639002 TRAK1Q9UPV9 953 aa8.18□□□□□ -1.1
CD44-239ENST00000639002 AOC2O75106 756 aa8.17□□□□□ -1.1
CD44-239ENST00000639002 ENOX2Q16206 610 aaKnown RBP8.17□□□□□ -1.1
CD44-239ENST00000639002 AKAP4Q5JQC9 854 aa8.17□□□□□ -1.1
CD44-239ENST00000639002 GATA6Q92908 595 aa8.17□□□□□ -1.1
CD44-239ENST00000639002 WDR89Q96FK6 387 aaPredicted RBP8.17□□□□□ -1.1
CD44-239ENST00000639002 WDR18Q9BV38 432 aa8.17□□□□□ -1.1
CD44-239ENST00000639002 BCO2Q9BYV7 579 aa8.17□□□□□ -1.1
CD44-239ENST00000639002 FAM105AQ9NUU6 356 aa8.17□□□□□ -1.1
CD44-239ENST00000639002 IVNS1ABPQ9Y6Y0 642 aa8.17□□□□□ -1.1
CD44-239ENST00000639002 FCGRTP55899 365 aa8.16□□□□□ -1.1
CD44-239ENST00000639002 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.16□□□□□ -1.1
CD44-239ENST00000639002 INTS5Q6P9B9 1019 aaKnown RBP8.16□□□□□ -1.1
CD44-239ENST00000639002 DTX1Q86Y01 620 aa8.16□□□□□ -1.1
CD44-239ENST00000639002 FBXL6Q8N531 539 aa8.16□□□□□ -1.1
CD44-239ENST00000639002 DDX54Q8TDD1 881 aaKnown RBP8.16□□□□□ -1.1
CD44-239ENST00000639002 SETDB2Q96T68 719 aa8.16□□□□□ -1.1
CD44-239ENST00000639002 CCDC86Q9H6F5 360 aaKnown RBP8.16□□□□□ -1.1
CD44-239ENST00000639002 PRKAG2Q9UGJ0 569 aa8.16□□□□□ -1.1
CD44-239ENST00000639002 PPP1R9AQ9ULJ8 1098 aa8.16□□□□□ -1.1
CD44-239ENST00000639002 PNMA6FA0A0J9YX94 578 aa8.15□□□□□ -1.1
CD44-239ENST00000639002 ZNF862O60290 1169 aa8.15□□□□□ -1.1
CD44-239ENST00000639002 NFICP08651 508 aa8.15□□□□□ -1.1
CD44-239ENST00000639002 AP3B2Q13367 1082 aa8.15□□□□□ -1.1
CD44-239ENST00000639002 PAOXQ6QHF9 649 aa8.15□□□□□ -1.1
CD44-239ENST00000639002 NXPE4Q6UWF7 544 aa8.15□□□□□ -1.1
CD44-239ENST00000639002 DYMQ7RTS9 669 aa8.15□□□□□ -1.1
CD44-239ENST00000639002 STK35Q8TDR2 534 aa8.15□□□□□ -1.1
CD44-239ENST00000639002 SEMA6CQ9H3T2 930 aa8.15□□□□□ -1.1
CD44-239ENST00000639002 ACSS3Q9H6R3 686 aa8.15□□□□□ -1.1
CD44-239ENST00000639002 RAD18Q9NS91 495 aa8.15□□□□□ -1.1
CD44-239ENST00000639002 LIG1P18858 919 aa8.14□□□□□ -1.11
CD44-239ENST00000639002 SEZ6L2Q6UXD5 910 aa8.14□□□□□ -1.11
CD44-239ENST00000639002 DTHD1Q6ZMT9 781 aa8.14□□□□□ -1.11
CD44-239ENST00000639002 PDZD3Q86UT5 571 aa8.14□□□□□ -1.11
CD44-239ENST00000639002 ZC3H12CQ9C0D7 883 aaKnown RBP8.14□□□□□ -1.11
CD44-239ENST00000639002 ZFYVE1Q9HBF4 777 aa8.14□□□□□ -1.11
CD44-239ENST00000639002 NLRP2Q9NX02 1062 aa8.14□□□□□ -1.11
CD44-239ENST00000639002 PIM2Q9P1W9 311 aa8.14□□□□□ -1.11
CD44-239ENST00000639002 SYNGAP1Q96PV0 1343 aa8.13□□□□□ -1.11
CD44-239ENST00000639002 DYNC1LI2O43237 492 aaPredicted RBP8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms