RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 HLFQ16534 295 aa14.87□□□□□ -0.03
LINC00540-203ENST00000631321 SYNE4Q8N205 404 aa14.87□□□□□ -0.03
LINC00540-203ENST00000631321 TSC1Q92574 1164 aa14.87□□□□□ -0.03
LINC00540-203ENST00000631321 BPIFA3Q9BQP9 254 aa14.87□□□□□ -0.03
LINC00540-203ENST00000631321 ZMYM6O95789 1325 aa14.86□□□□□ -0.03
LINC00540-203ENST00000631321 CPLX1O14810 134 aa14.86□□□□□ -0.03
LINC00540-203ENST00000631321 SPTLC2O15270 562 aa14.86□□□□□ -0.03
LINC00540-203ENST00000631321 LRRC8AQ8IWT6 810 aa14.86□□□□□ -0.03
LINC00540-203ENST00000631321 BCL2L12Q9HB09 334 aa14.86□□□□□ -0.03
LINC00540-203ENST00000631321 ARID4AP29374 1257 aaPredicted RBP14.86□□□□□ -0.03
LINC00540-203ENST00000631321 KIAA1468Q9P260 1216 aa14.86□□□□□ -0.03
LINC00540-203ENST00000631321 ANGEL1Q9UNK9 670 aaKnown RBP14.86□□□□□ -0.03
LINC00540-203ENST00000631321 A0A1B0GVL5 298 aa14.85□□□□□ -0.03
LINC00540-203ENST00000631321 KIF28PB7ZC32 967 aa14.85□□□□□ -0.03
LINC00540-203ENST00000631321 SH2B2O14492 632 aaPredicted RBP14.85□□□□□ -0.03
LINC00540-203ENST00000631321 SF3A1Q15459 793 aaKnown RBP14.85□□□□□ -0.03
LINC00540-203ENST00000631321 AXDND1Q5T1B0 1012 aaPredicted RBP14.85□□□□□ -0.03
LINC00540-203ENST00000631321 SLC9C2Q5TAH2 1124 aa14.85□□□□□ -0.03
LINC00540-203ENST00000631321 TBC1D10CQ8IV04 446 aa14.85□□□□□ -0.03
LINC00540-203ENST00000631321 SDF4Q9BRK5 362 aa14.85□□□□□ -0.03
LINC00540-203ENST00000631321 PIH1D3Q9NQM4 214 aaKnown RBP14.85□□□□□ -0.03
LINC00540-203ENST00000631321 AKAP11Q9UKA4 1901 aa14.85□□□□□ -0.03
LINC00540-203ENST00000631321 POLR3DP05423 398 aaPredicted RBP14.85□□□□□ -0.03
LINC00540-203ENST00000631321 CYP19A1P11511 503 aaPredicted RBP14.85□□□□□ -0.03
LINC00540-203ENST00000631321 TRDNQ13061 729 aa14.85□□□□□ -0.03
LINC00540-203ENST00000631321 ALX1Q15699 326 aa14.85□□□□□ -0.03
LINC00540-203ENST00000631321 ANO1Q5XXA6 986 aa14.85□□□□□ -0.03
LINC00540-203ENST00000631321 CCDC94Q9BW85 323 aaPredicted RBP14.85□□□□□ -0.03
LINC00540-203ENST00000631321 LRP6O75581 1613 aa14.85□□□□□ -0.03
LINC00540-203ENST00000631321 MYH7P12883 1935 aa14.85□□□□□ -0.03
LINC00540-203ENST00000631321 TCRBV5S4A2TA0A5A2 114 aa14.84□□□□□ -0.03
LINC00540-203ENST00000631321 SMTNL1A8MU46 457 aa14.84□□□□□ -0.03
LINC00540-203ENST00000631321 IRS4O14654 1257 aaPredicted RBP14.84□□□□□ -0.03
LINC00540-203ENST00000631321 PDE8BO95263 885 aa14.84□□□□□ -0.03
LINC00540-203ENST00000631321 CMA1P23946 247 aa14.84□□□□□ -0.03
LINC00540-203ENST00000631321 AOPEPQ8N6M6 819 aa14.84□□□□□ -0.03
LINC00540-203ENST00000631321 ANKRD7Q92527 254 aa14.84□□□□□ -0.03
LINC00540-203ENST00000631321 CNNM1Q9NRU3 951 aa14.84□□□□□ -0.03
LINC00540-203ENST00000631321 KCND1Q9NSA2 647 aa14.84□□□□□ -0.03
LINC00540-203ENST00000631321 LRP5O75197 1615 aa14.84□□□□□ -0.03
LINC00540-203ENST00000631321 C4AP0C0L4 1744 aa14.84□□□□□ -0.03
LINC00540-203ENST00000631321 C4BP0C0L5 1744 aa14.84□□□□□ -0.03
LINC00540-203ENST00000631321 UQCRFS1P1P0C7P4 283 aa14.84□□□□□ -0.03
LINC00540-203ENST00000631321 GPTP24298 496 aa14.84□□□□□ -0.03
LINC00540-203ENST00000631321 SYNE3Q6ZMZ3 975 aa14.84□□□□□ -0.03
LINC00540-203ENST00000631321 CYB5R4Q7L1T6 521 aa14.84□□□□□ -0.03
LINC00540-203ENST00000631321 DISP2A7MBM2 1401 aa14.83□□□□□ -0.03
LINC00540-203ENST00000631321 BCL9O00512 1426 aa14.83□□□□□ -0.03
LINC00540-203ENST00000631321 A0A087WWV3 80 aa14.83□□□□□ -0.04
LINC00540-203ENST00000631321 ERVV-1B6SEH8 477 aa14.83□□□□□ -0.04
LINC00540-203ENST00000631321 PDE8AO60658 829 aa14.83□□□□□ -0.04
LINC00540-203ENST00000631321 CDKL5O76039 1030 aa14.83□□□□□ -0.04
LINC00540-203ENST00000631321 PDE6AP16499 860 aa14.83□□□□□ -0.04
LINC00540-203ENST00000631321 HSPA2P54652 639 aa14.83□□□□□ -0.04
LINC00540-203ENST00000631321 SLC39A14Q15043 492 aa14.83□□□□□ -0.04
LINC00540-203ENST00000631321 SYCP1Q15431 976 aa14.83□□□□□ -0.04
LINC00540-203ENST00000631321 SLC4A9Q96Q91 983 aa14.83□□□□□ -0.04
LINC00540-203ENST00000631321 PAXBP1Q9Y5B6 917 aa14.83□□□□□ -0.04
LINC00540-203ENST00000631321 TNNT1P13805 278 aa14.83□□□□□ -0.04
LINC00540-203ENST00000631321 FGFR2P21802 821 aa14.83□□□□□ -0.04
LINC00540-203ENST00000631321 CCDC102BQ68D86 513 aa14.83□□□□□ -0.04
LINC00540-203ENST00000631321 TMEM87BQ96K49 555 aa14.83□□□□□ -0.04
LINC00540-203ENST00000631321 OSBPL5Q9H0X9 879 aaPredicted RBP14.83□□□□□ -0.04
LINC00540-203ENST00000631321 ZNF532Q9HCE3 1301 aa14.82□□□□□ -0.04
LINC00540-203ENST00000631321 ZNF202O95125 648 aa14.82□□□□□ -0.04
LINC00540-203ENST00000631321 METAP2P50579 478 aaKnown RBP eCLIP14.82□□□□□ -0.04
LINC00540-203ENST00000631321 APOA5Q6Q788 366 aa14.82□□□□□ -0.04
LINC00540-203ENST00000631321 SGMS1Q86VZ5 419 aa14.82□□□□□ -0.04
LINC00540-203ENST00000631321 RAB11FIP4Q86YS3 637 aa14.82□□□□□ -0.04
LINC00540-203ENST00000631321 NKX2-3Q8TAU0 364 aa14.82□□□□□ -0.04
LINC00540-203ENST00000631321 C16orf45Q96MC5 204 aaPredicted RBP14.82□□□□□ -0.04
LINC00540-203ENST00000631321 TIGD1Q96MW7 591 aa14.82□□□□□ -0.04
LINC00540-203ENST00000631321 GJB4Q9NTQ9 266 aa14.82□□□□□ -0.04
LINC00540-203ENST00000631321 IMPACTQ9P2X3 320 aa14.82□□□□□ -0.04
LINC00540-203ENST00000631321 TBC1D2BQ9UPU7 963 aa14.82□□□□□ -0.04
LINC00540-203ENST00000631321 FAM237AA0A1B0GTK4 181 aa14.82□□□□□ -0.04
LINC00540-203ENST00000631321 PHKA1P46020 1223 aa14.82□□□□□ -0.04
LINC00540-203ENST00000631321 GSDMDP57764 484 aa14.82□□□□□ -0.04
LINC00540-203ENST00000631321 NLRP12P59046 1061 aa14.82□□□□□ -0.04
LINC00540-203ENST00000631321 CCZ1BP86790 482 aa14.82□□□□□ -0.04
LINC00540-203ENST00000631321 CCZ1P86791 482 aaPredicted RBP14.82□□□□□ -0.04
LINC00540-203ENST00000631321 PUM3Q15397 648 aaKnown RBP14.82□□□□□ -0.04
LINC00540-203ENST00000631321 DPCR1Q3MIW9 517 aa14.82□□□□□ -0.04
LINC00540-203ENST00000631321 IGDCC4Q8TDY8 1250 aa14.82□□□□□ -0.04
LINC00540-203ENST00000631321 LPIN2Q92539 896 aa14.82□□□□□ -0.04
LINC00540-203ENST00000631321 ERCC4Q92889 916 aaPredicted RBP14.82□□□□□ -0.04
LINC00540-203ENST00000631321 AK7Q96M32 723 aa14.82□□□□□ -0.04
LINC00540-203ENST00000631321 STRBPQ96SI9 672 aaKnown RBP14.82□□□□□ -0.04
LINC00540-203ENST00000631321 ALG1Q9BT22 464 aa14.82□□□□□ -0.04
LINC00540-203ENST00000631321 TRMT112Q9UI30 125 aaKnown RBP14.82□□□□□ -0.04
LINC00540-203ENST00000631321 DENND2AQ9ULE3 1009 aa14.82□□□□□ -0.04
LINC00540-203ENST00000631321 PPP6R2O75170 966 aa14.81□□□□□ -0.04
LINC00540-203ENST00000631321 IDH1O75874 414 aaKnown RBP14.81□□□□□ -0.04
LINC00540-203ENST00000631321 SLC3A2P08195 630 aaKnown RBP14.81□□□□□ -0.04
LINC00540-203ENST00000631321 PFKFB1P16118 471 aa14.81□□□□□ -0.04
LINC00540-203ENST00000631321 ARID5BQ14865 1188 aa14.81□□□□□ -0.04
LINC00540-203ENST00000631321 TPD52L1Q16890 204 aaPredicted RBP14.81□□□□□ -0.04
LINC00540-203ENST00000631321 MROH5Q6ZUA9 1318 aa14.81□□□□□ -0.04
LINC00540-203ENST00000631321 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.81□□□□□ -0.04
LINC00540-203ENST00000631321 CCDC69A6NI79 296 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms