RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 PRPF40BQ6NWY9 871 aaKnown RBP9.56□□□□□ -0.88
VPS29-212ENST00000621131 GLIS3Q8NEA6 775 aa9.56□□□□□ -0.88
VPS29-212ENST00000621131 EPS8L3Q8TE67 593 aaKnown RBP9.56□□□□□ -0.88
VPS29-212ENST00000621131 ABCB6Q9NP58 842 aa9.56□□□□□ -0.88
VPS29-212ENST00000621131 TMEM238LA0A1B0GVL6 79 aa9.55□□□□□ -0.88
VPS29-212ENST00000621131 BEND4Q6ZU67 534 aa9.55□□□□□ -0.88
VPS29-212ENST00000621131 TRIM56Q9BRZ2 755 aaKnown RBP9.55□□□□□ -0.88
VPS29-212ENST00000621131 GADD45BO75293 160 aaPredicted RBP9.54□□□□□ -0.88
VPS29-212ENST00000621131 CYP11A1P05108 521 aa9.54□□□□□ -0.88
VPS29-212ENST00000621131 DRD2P14416 443 aa9.54□□□□□ -0.88
VPS29-212ENST00000621131 MAOBP27338 520 aa9.54□□□□□ -0.88
VPS29-212ENST00000621131 GRM2Q14416 872 aa9.54□□□□□ -0.88
VPS29-212ENST00000621131 ZDHHC13Q8IUH4 622 aa9.54□□□□□ -0.88
VPS29-212ENST00000621131 KCNF1Q9H3M0 494 aa9.54□□□□□ -0.88
VPS29-212ENST00000621131 MAP4P27816 1152 aaKnown RBP9.53□□□□□ -0.88
VPS29-212ENST00000621131 PLCB3Q01970 1234 aa9.53□□□□□ -0.88
VPS29-212ENST00000621131 POU4F3Q15319 338 aa9.53□□□□□ -0.88
VPS29-212ENST00000621131 SGO2Q562F6 1265 aa9.53□□□□□ -0.88
VPS29-212ENST00000621131 TREHO43280 583 aa9.52□□□□□ -0.89
VPS29-212ENST00000621131 GAS2O43903 313 aaKnown RBP9.52□□□□□ -0.89
VPS29-212ENST00000621131 ECEL1O95672 775 aa9.52□□□□□ -0.89
VPS29-212ENST00000621131 SOX4Q06945 474 aaPredicted RBP9.52□□□□□ -0.89
VPS29-212ENST00000621131 RPS26P11Q5JNZ5 115 aaPredicted RBP9.52□□□□□ -0.89
VPS29-212ENST00000621131 DBNDD2Q9BQY9 259 aa9.52□□□□□ -0.89
VPS29-212ENST00000621131 TRAK1Q9UPV9 953 aa9.52□□□□□ -0.89
VPS29-212ENST00000621131 PRR19A6NJB7 356 aa9.51□□□□□ -0.89
VPS29-212ENST00000621131 MED26O95402 600 aa9.51□□□□□ -0.89
VPS29-212ENST00000621131 MAPK1P28482 360 aa9.51□□□□□ -0.89
VPS29-212ENST00000621131 PI16Q6UXB8 463 aa9.51□□□□□ -0.89
VPS29-212ENST00000621131 C2CD4AQ8NCU7 369 aaPredicted RBP9.51□□□□□ -0.89
VPS29-212ENST00000621131 DDX54Q8TDD1 881 aaKnown RBP9.51□□□□□ -0.89
VPS29-212ENST00000621131 IVNS1ABPQ9Y6Y0 642 aa9.51□□□□□ -0.89
VPS29-212ENST00000621131 TGFB1P01137 390 aa9.5□□□□□ -0.89
VPS29-212ENST00000621131 SSTR4P31391 388 aa9.5□□□□□ -0.89
VPS29-212ENST00000621131 CD97P48960 835 aa9.5□□□□□ -0.89
VPS29-212ENST00000621131 KCNA1Q09470 495 aa9.5□□□□□ -0.89
VPS29-212ENST00000621131 FAAP100Q0VG06 881 aa9.5□□□□□ -0.89
VPS29-212ENST00000621131 CDPF1Q6NVV7 123 aa9.5□□□□□ -0.89
VPS29-212ENST00000621131 ZFYVE1Q9HBF4 777 aa9.5□□□□□ -0.89
VPS29-212ENST00000621131 ENOX2Q16206 610 aaKnown RBP9.49□□□□□ -0.89
VPS29-212ENST00000621131 NBPF11Q86T75 865 aa9.49□□□□□ -0.89
VPS29-212ENST00000621131 TRAIPQ9BWF2 469 aa9.49□□□□□ -0.89
VPS29-212ENST00000621131 ADH5P11766 374 aa9.48□□□□□ -0.89
VPS29-212ENST00000621131 SHKBP1Q8TBC3 707 aa9.48□□□□□ -0.89
VPS29-212ENST00000621131 CORO1BQ9BR76 489 aa9.48□□□□□ -0.89
VPS29-212ENST00000621131 NLRP2Q9NX02 1062 aa9.48□□□□□ -0.89
VPS29-212ENST00000621131 PNMA6FA0A0J9YX94 578 aa9.47□□□□□ -0.89
VPS29-212ENST00000621131 COBLO75128 1261 aa9.47□□□□□ -0.89
VPS29-212ENST00000621131 USP11P51784 963 aa9.47□□□□□ -0.89
VPS29-212ENST00000621131 ZNF157P51786 506 aaPredicted RBP9.47□□□□□ -0.89
VPS29-212ENST00000621131 HP1BP3Q5SSJ5 553 aaPredicted RBP9.47□□□□□ -0.89
VPS29-212ENST00000621131 FBLIM1Q8WUP2 373 aa9.47□□□□□ -0.89
VPS29-212ENST00000621131 EZH1Q92800 747 aaPredicted RBP9.47□□□□□ -0.89
VPS29-212ENST00000621131 BCO2Q9BYV7 579 aa9.47□□□□□ -0.89
VPS29-212ENST00000621131 PPP4R2Q9NY27 417 aa9.47□□□□□ -0.89
VPS29-212ENST00000621131 FAM95CA0A1B0GW59 222 aa9.46□□□□□ -0.9
VPS29-212ENST00000621131 RXRBP28702 533 aa9.46□□□□□ -0.9
VPS29-212ENST00000621131 FCGRTP55899 365 aa9.46□□□□□ -0.9
VPS29-212ENST00000621131 AP3B2Q13367 1082 aa9.46□□□□□ -0.9
VPS29-212ENST00000621131 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.46□□□□□ -0.9
VPS29-212ENST00000621131 MFSD14AQ96MC6 490 aa9.46□□□□□ -0.9
VPS29-212ENST00000621131 PCMTD2Q9NV79 361 aa9.46□□□□□ -0.9
VPS29-212ENST00000621131 ACTL7BQ9Y614 415 aa9.46□□□□□ -0.9
VPS29-212ENST00000621131 KIAA1324LA8MWY0 1029 aaPredicted RBP9.45□□□□□ -0.9
VPS29-212ENST00000621131 NFKBIBQ15653 356 aa9.45□□□□□ -0.9
VPS29-212ENST00000621131 DTHD1Q6ZMT9 781 aa9.45□□□□□ -0.9
VPS29-212ENST00000621131 GSX1Q9H4S2 264 aaPredicted RBP9.45□□□□□ -0.9
VPS29-212ENST00000621131 RAD18Q9NS91 495 aa9.45□□□□□ -0.9
VPS29-212ENST00000621131 WDR64B1ANS9 1081 aa9.44□□□□□ -0.9
VPS29-212ENST00000621131 AOC2O75106 756 aa9.44□□□□□ -0.9
VPS29-212ENST00000621131 AKAP4Q5JQC9 854 aa9.44□□□□□ -0.9
VPS29-212ENST00000621131 NXPE4Q6UWF7 544 aa9.44□□□□□ -0.9
VPS29-212ENST00000621131 SHISA5Q8N114 240 aa9.44□□□□□ -0.9
VPS29-212ENST00000621131 ASB16Q96NS5 453 aa9.44□□□□□ -0.9
VPS29-212ENST00000621131 SYNGAP1Q96PV0 1343 aa9.44□□□□□ -0.9
VPS29-212ENST00000621131 F13BP05160 661 aa9.43□□□□□ -0.9
VPS29-212ENST00000621131 XRCC5P13010 732 aaKnown RBP9.43□□□□□ -0.9
VPS29-212ENST00000621131 FMR1Q06787 632 aaKnown RBP eCLIP9.43□□□□□ -0.9
VPS29-212ENST00000621131 INTS5Q6P9B9 1019 aaKnown RBP9.43□□□□□ -0.9
VPS29-212ENST00000621131 PAOXQ6QHF9 649 aa9.43□□□□□ -0.9
VPS29-212ENST00000621131 DYMQ7RTS9 669 aa9.43□□□□□ -0.9
VPS29-212ENST00000621131 ZSCAN29Q8IWY8 852 aaPredicted RBP9.43□□□□□ -0.9
VPS29-212ENST00000621131 WDR18Q9BV38 432 aa9.43□□□□□ -0.9
VPS29-212ENST00000621131 WDR89Q96FK6 387 aaPredicted RBP9.42□□□□□ -0.9
VPS29-212ENST00000621131 CCDC86Q9H6F5 360 aaKnown RBP9.42□□□□□ -0.9
VPS29-212ENST00000621131 FAM105AQ9NUU6 356 aa9.42□□□□□ -0.9
VPS29-212ENST00000621131 TMEM39AQ9NV64 488 aa9.42□□□□□ -0.9
VPS29-212ENST00000621131 PPP1R9AQ9ULJ8 1098 aa9.42□□□□□ -0.9
VPS29-212ENST00000621131 NFICP08651 508 aa9.41□□□□□ -0.9
VPS29-212ENST00000621131 LIG1P18858 919 aa9.41□□□□□ -0.9
VPS29-212ENST00000621131 ADMP35318 185 aa9.41□□□□□ -0.9
VPS29-212ENST00000621131 GRIK1P39086 918 aa9.41□□□□□ -0.9
VPS29-212ENST00000621131 PDE3AQ14432 1141 aa9.41□□□□□ -0.9
VPS29-212ENST00000621131 YIPF2Q9BWQ6 316 aa9.41□□□□□ -0.9
VPS29-212ENST00000621131 ACSS3Q9H6R3 686 aa9.41□□□□□ -0.9
VPS29-212ENST00000621131 PRKAG2Q9UGJ0 569 aa9.41□□□□□ -0.9
VPS29-212ENST00000621131 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP9.4□□□□□ -0.9
VPS29-212ENST00000621131 ZNF862O60290 1169 aa9.4□□□□□ -0.9
VPS29-212ENST00000621131 SPINK2P20155 84 aa9.4□□□□□ -0.9
VPS29-212ENST00000621131 MAPK8P45983 427 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms