RNA–Protein interactions for RNA: ENST00000602557.5

CSMD1-216, Transcript of CUB and Sushi multiple domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CSMD1, Length 11,740 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-216ENST00000602557 OPHN1O60890 802 aa9.78□□□□□ -0.84
CSMD1-216ENST00000602557 ZWINTO95229 277 aa9.78□□□□□ -0.84
CSMD1-216ENST00000602557 GJC1P36383 396 aa9.78□□□□□ -0.84
CSMD1-216ENST00000602557 SH2D4BQ5SQS7 431 aa9.78□□□□□ -0.84
CSMD1-216ENST00000602557 WHAMMQ8TF30 809 aa9.78□□□□□ -0.84
CSMD1-216ENST00000602557 ODF2LQ9ULJ1 636 aa9.78□□□□□ -0.84
CSMD1-216ENST00000602557 CDC5LQ99459 802 aaKnown RBP9.78□□□□□ -0.84
CSMD1-216ENST00000602557 ERCC6LQ2NKX8 1250 aa9.78□□□□□ -0.84
CSMD1-216ENST00000602557 CCDC63Q8NA47 563 aa9.78□□□□□ -0.84
CSMD1-216ENST00000602557 XAB2Q9HCS7 855 aaKnown RBP9.78□□□□□ -0.84
CSMD1-216ENST00000602557 CCT5P48643 541 aa9.78□□□□□ -0.84
CSMD1-216ENST00000602557 NAPGQ99747 312 aaPredicted RBP9.78□□□□□ -0.84
CSMD1-216ENST00000602557 TMED1Q13445 227 aa9.78□□□□□ -0.84
CSMD1-216ENST00000602557 Q6ZUG5 572 aa9.78□□□□□ -0.84
CSMD1-216ENST00000602557 ALG1Q9BT22 464 aa9.78□□□□□ -0.84
CSMD1-216ENST00000602557 MAP7Q14244 749 aa9.78□□□□□ -0.84
CSMD1-216ENST00000602557 HOMEZQ8IX15 550 aa9.78□□□□□ -0.84
CSMD1-216ENST00000602557 SMC5Q8IY18 1101 aa9.78□□□□□ -0.84
CSMD1-216ENST00000602557 RNF10Q8N5U6 811 aaKnown RBP9.78□□□□□ -0.84
CSMD1-216ENST00000602557 NUCKS1Q9H1E3 243 aaKnown RBP9.78□□□□□ -0.84
CSMD1-216ENST00000602557 HLA-DOAP06340 250 aa9.78□□□□□ -0.84
CSMD1-216ENST00000602557 SREK1Q8WXA9 508 aaKnown RBP9.78□□□□□ -0.84
CSMD1-216ENST00000602557 ATP1A2P50993 1020 aa9.77□□□□□ -0.84
CSMD1-216ENST00000602557 FERMT1Q9BQL6 677 aa9.77□□□□□ -0.84
CSMD1-216ENST00000602557 CRNKL1Q9BZJ0 848 aaKnown RBP9.77□□□□□ -0.84
CSMD1-216ENST00000602557 WASLO00401 505 aaPredicted RBP9.77□□□□□ -0.84
CSMD1-216ENST00000602557 FOXO3O43524 673 aa9.77□□□□□ -0.84
CSMD1-216ENST00000602557 SEC31AO94979 1220 aaKnown RBP9.77□□□□□ -0.84
CSMD1-216ENST00000602557 TUBB4AP04350 444 aa9.77□□□□□ -0.84
CSMD1-216ENST00000602557 CLTAP09496 248 aa9.77□□□□□ -0.84
CSMD1-216ENST00000602557 IFIT1BQ5T764 474 aaKnown RBP9.77□□□□□ -0.84
CSMD1-216ENST00000602557 ARL1P40616 181 aaPredicted RBP9.77□□□□□ -0.85
CSMD1-216ENST00000602557 MGARPQ8TDB4 240 aa9.77□□□□□ -0.85
CSMD1-216ENST00000602557 PPP1R9BQ96SB3 815 aa9.77□□□□□ -0.85
CSMD1-216ENST00000602557 EFCC1Q9HA90 598 aa9.77□□□□□ -0.85
CSMD1-216ENST00000602557 THOC2Q8NI27 1593 aaKnown RBP9.77□□□□□ -0.85
CSMD1-216ENST00000602557 TSPY3P0CV98 308 aa9.77□□□□□ -0.85
CSMD1-216ENST00000602557 TSPY8P0CW00 308 aa9.77□□□□□ -0.85
CSMD1-216ENST00000602557 MIER3Q7Z3K6 550 aa9.77□□□□□ -0.85
CSMD1-216ENST00000602557 ARFGAP2Q8N6H7 521 aa9.77□□□□□ -0.85
CSMD1-216ENST00000602557 ICE2Q659A1 982 aa9.77□□□□□ -0.85
CSMD1-216ENST00000602557 LDHAL6AQ6ZMR3 332 aa9.77□□□□□ -0.85
CSMD1-216ENST00000602557 SNX21Q969T3 373 aa9.77□□□□□ -0.85
CSMD1-216ENST00000602557 PLVAPQ9BX97 442 aa9.77□□□□□ -0.85
CSMD1-216ENST00000602557 PDE11AQ9HCR9 933 aa9.77□□□□□ -0.85
CSMD1-216ENST00000602557 IQSEC3Q9UPP2 1182 aaPredicted RBP9.77□□□□□ -0.85
CSMD1-216ENST00000602557 STAG1Q8WVM7 1258 aa9.77□□□□□ -0.85
CSMD1-216ENST00000602557 NKIRAS1Q9NYS0 192 aa9.77□□□□□ -0.85
CSMD1-216ENST00000602557 PPANQ9NQ55 473 aaKnown RBP9.77□□□□□ -0.85
CSMD1-216ENST00000602557 FAF1Q9UNN5 650 aaPredicted RBP9.77□□□□□ -0.85
CSMD1-216ENST00000602557 KRT23Q9C075 422 aa9.77□□□□□ -0.85
CSMD1-216ENST00000602557 RUFY3Q7L099 469 aa9.77□□□□□ -0.85
CSMD1-216ENST00000602557 EEF2P13639 858 aaKnown RBP9.77□□□□□ -0.85
CSMD1-216ENST00000602557 RANBP1P43487 201 aa9.77□□□□□ -0.85
CSMD1-216ENST00000602557 ZMAT2Q96NC0 199 aaKnown RBP9.77□□□□□ -0.85
CSMD1-216ENST00000602557 ALDH3A1P30838 453 aa9.76□□□□□ -0.85
CSMD1-216ENST00000602557 LRRC23Q53EV4 343 aaPredicted RBP9.76□□□□□ -0.85
CSMD1-216ENST00000602557 BAG1Q99933 345 aaPredicted RBP9.76□□□□□ -0.85
CSMD1-216ENST00000602557 NBPF6Q5VWK0 638 aa9.76□□□□□ -0.85
CSMD1-216ENST00000602557 NBPF5PQ86XG9 351 aaPredicted RBP9.76□□□□□ -0.85
CSMD1-216ENST00000602557 TMEM87AQ8NBN3 555 aa9.76□□□□□ -0.85
CSMD1-216ENST00000602557 NBPF4Q96M43 638 aa9.76□□□□□ -0.85
CSMD1-216ENST00000602557 UBXN1Q04323 297 aa9.76□□□□□ -0.85
CSMD1-216ENST00000602557 GSTA5Q7RTV2 222 aa9.76□□□□□ -0.85
CSMD1-216ENST00000602557 LRRC27Q9C0I9 530 aa9.76□□□□□ -0.85
CSMD1-216ENST00000602557 CCDC122Q5T0U0 273 aa9.76□□□□□ -0.85
CSMD1-216ENST00000602557 RASEFQ8IZ41 740 aa9.76□□□□□ -0.85
CSMD1-216ENST00000602557 DDX21Q9NR30 783 aaKnown RBP eCLIP9.76□□□□□ -0.85
CSMD1-216ENST00000602557 ADGRF5Q8IZF2 1346 aa9.76□□□□□ -0.85
CSMD1-216ENST00000602557 PABPN1LA6NDY0 278 aaKnown RBP9.76□□□□□ -0.85
CSMD1-216ENST00000602557 STX17P56962 302 aa9.76□□□□□ -0.85
CSMD1-216ENST00000602557 CCDC77Q9BR77 488 aa9.76□□□□□ -0.85
CSMD1-216ENST00000602557 PHF8Q9UPP1 1060 aa9.76□□□□□ -0.85
CSMD1-216ENST00000602557 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.76□□□□□ -0.85
CSMD1-216ENST00000602557 HDAC1Q13547 482 aaPredicted RBP9.76□□□□□ -0.85
CSMD1-216ENST00000602557 PSMD6Q15008 389 aa9.76□□□□□ -0.85
CSMD1-216ENST00000602557 MRRFQ96E11 262 aaKnown RBP9.76□□□□□ -0.85
CSMD1-216ENST00000602557 KSR1Q8IVT5 923 aa9.75□□□□□ -0.85
CSMD1-216ENST00000602557 ZNF215Q9UL58 517 aaPredicted RBP9.75□□□□□ -0.85
CSMD1-216ENST00000602557 RBM8AQ9Y5S9 174 aaKnown RBP9.75□□□□□ -0.85
CSMD1-216ENST00000602557 CCT6AP40227 531 aaKnown RBP9.75□□□□□ -0.85
CSMD1-216ENST00000602557 ERCC5P28715 1186 aaPredicted RBP9.75□□□□□ -0.85
CSMD1-216ENST00000602557 SLC8A1P32418 973 aa9.75□□□□□ -0.85
CSMD1-216ENST00000602557 MRPS9P82933 396 aaKnown RBP9.75□□□□□ -0.85
CSMD1-216ENST00000602557 RHPN1Q8TCX5 695 aa9.75□□□□□ -0.85
CSMD1-216ENST00000602557 UNC13AQ9UPW8 1703 aa9.75□□□□□ -0.85
CSMD1-216ENST00000602557 SND1Q7KZF4 910 aaKnown RBP eCLIP9.75□□□□□ -0.85
CSMD1-216ENST00000602557 MCTP2Q6DN12 878 aa9.75□□□□□ -0.85
CSMD1-216ENST00000602557 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.75□□□□□ -0.85
CSMD1-216ENST00000602557 MEIS3Q99687 375 aa9.75□□□□□ -0.85
CSMD1-216ENST00000602557 HMGXB3Q12766 1538 aa9.75□□□□□ -0.85
CSMD1-216ENST00000602557 FBLN1P23142 703 aa9.75□□□□□ -0.85
CSMD1-216ENST00000602557 MAP7D1Q3KQU3 841 aa9.75□□□□□ -0.85
CSMD1-216ENST00000602557 CALM1P0DP23 149 aa9.75□□□□□ -0.85
CSMD1-216ENST00000602557 CALM2P0DP24 149 aa9.75□□□□□ -0.85
CSMD1-216ENST00000602557 CALM3P0DP25 149 aa9.75□□□□□ -0.85
CSMD1-216ENST00000602557 PDE1AP54750 535 aa9.75□□□□□ -0.85
CSMD1-216ENST00000602557 NAPAP54920 295 aa9.75□□□□□ -0.85
CSMD1-216ENST00000602557 DDX12PQ92771 950 aa9.75□□□□□ -0.85
CSMD1-216ENST00000602557 ESYT1Q9BSJ8 1104 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms