RNA–Protein interactions for RNA: ENST00000593912.5

VRK3-204, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 551 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-204ENST00000593912 COL4A6Q14031 1691 aa4.26□□□□□ -1.73
VRK3-204ENST00000593912 A0A0G2JMZ2 1700 aa4.25□□□□□ -1.73
VRK3-204ENST00000593912 TLL1O43897 1013 aa4.25□□□□□ -1.73
VRK3-204ENST00000593912 PPP1R12BO60237 982 aaPredicted RBP4.25□□□□□ -1.73
VRK3-204ENST00000593912 BBOX1O75936 387 aa4.25□□□□□ -1.73
VRK3-204ENST00000593912 U2AF1L5P0DN76 240 aaPredicted RBP4.25□□□□□ -1.73
VRK3-204ENST00000593912 MAP1BP46821 2468 aaKnown RBP4.25□□□□□ -1.73
VRK3-204ENST00000593912 GTF2A2P52657 109 aa4.25□□□□□ -1.73
VRK3-204ENST00000593912 U2AF1Q01081 240 aaKnown RBP eCLIP4.25□□□□□ -1.73
VRK3-204ENST00000593912 CSPP1Q1MSJ5 1256 aa4.25□□□□□ -1.73
VRK3-204ENST00000593912 NBPF12Q5TAG4 269 aaPredicted RBP4.25□□□□□ -1.73
VRK3-204ENST00000593912 SULT6B1Q6IMI4 303 aa4.25□□□□□ -1.73
VRK3-204ENST00000593912 ZNF790Q6PG37 636 aa4.25□□□□□ -1.73
VRK3-204ENST00000593912 APOBEC3FQ8IUX4 373 aaKnown RBP4.25□□□□□ -1.73
VRK3-204ENST00000593912 NGEFQ8N5V2 710 aa4.25□□□□□ -1.73
VRK3-204ENST00000593912 NLRP3Q96P20 1036 aa4.25□□□□□ -1.73
VRK3-204ENST00000593912 DEFB129Q9H1M3 183 aa4.25□□□□□ -1.73
VRK3-204ENST00000593912 FRMPD3Q5JV73 1810 aa4.25□□□□□ -1.73
VRK3-204ENST00000593912 ECM29Q5VYK3 1845 aa4.25□□□□□ -1.73
VRK3-204ENST00000593912 GBF1Q92538 1859 aa4.24□□□□□ -1.73
VRK3-204ENST00000593912 GPR179Q6PRD1 2367 aa4.24□□□□□ -1.73
VRK3-204ENST00000593912 USP24Q9UPU5 2620 aa4.24□□□□□ -1.73
VRK3-204ENST00000593912 SOWAHBA6NEL2 793 aa4.24□□□□□ -1.73
VRK3-204ENST00000593912 G3V3G9 751 aa4.24□□□□□ -1.73
VRK3-204ENST00000593912 SLC24A1O60721 1099 aa4.24□□□□□ -1.73
VRK3-204ENST00000593912 COL6A1P12109 1028 aa4.24□□□□□ -1.73
VRK3-204ENST00000593912 HCLS1P14317 486 aaPredicted RBP4.24□□□□□ -1.73
VRK3-204ENST00000593912 PBX2P40425 430 aa4.24□□□□□ -1.73
VRK3-204ENST00000593912 ID4P47928 161 aa4.24□□□□□ -1.73
VRK3-204ENST00000593912 IREB2P48200 963 aaKnown RBP4.24□□□□□ -1.73
VRK3-204ENST00000593912 ATN1P54259 1190 aaPredicted RBP4.24□□□□□ -1.73
VRK3-204ENST00000593912 FCGRTP55899 365 aa4.24□□□□□ -1.73
VRK3-204ENST00000593912 GRAPQ13588 217 aa4.24□□□□□ -1.73
VRK3-204ENST00000593912 SKIV2LQ15477 1246 aaKnown RBP4.24□□□□□ -1.73
VRK3-204ENST00000593912 DCAF8Q5TAQ9 597 aa4.24□□□□□ -1.73
VRK3-204ENST00000593912 PPP1R3FQ6ZSY5 799 aaPredicted RBP4.24□□□□□ -1.73
VRK3-204ENST00000593912 ANKRD13AQ8IZ07 590 aa4.24□□□□□ -1.73
VRK3-204ENST00000593912 TBC1D16Q8TBP0 767 aa4.24□□□□□ -1.73
VRK3-204ENST00000593912 GRAPLQ8TC17 118 aaPredicted RBP4.24□□□□□ -1.73
VRK3-204ENST00000593912 BADQ92934 168 aa4.24□□□□□ -1.73
VRK3-204ENST00000593912 ZNF428Q96B54 188 aa4.24□□□□□ -1.73
VRK3-204ENST00000593912 TIFAQ96CG3 184 aa4.24□□□□□ -1.73
VRK3-204ENST00000593912 RNPC3Q96LT9 517 aaKnown RBP4.24□□□□□ -1.73
VRK3-204ENST00000593912 FMNL2Q96PY5 1086 aa4.24□□□□□ -1.73
VRK3-204ENST00000593912 KCNH6Q9H252 994 aa4.24□□□□□ -1.73
VRK3-204ENST00000593912 PCDHAC2Q9Y5I4 1007 aa4.24□□□□□ -1.73
VRK3-204ENST00000593912 ACACBO00763 2458 aa4.24□□□□□ -1.73
VRK3-204ENST00000593912 IBTKQ9P2D0 1353 aaPredicted RBP4.24□□□□□ -1.73
VRK3-204ENST00000593912 COL1A1P02452 1464 aaPredicted RBP4.24□□□□□ -1.73
VRK3-204ENST00000593912 AOX1Q06278 1338 aa4.23□□□□□ -1.73
VRK3-204ENST00000593912 MAST4O15021 2626 aa4.23□□□□□ -1.73
VRK3-204ENST00000593912 GRXCR1A8MXD5 290 aa4.23□□□□□ -1.73
VRK3-204ENST00000593912 WDHD1O75717 1129 aaPredicted RBP4.23□□□□□ -1.73
VRK3-204ENST00000593912 CAPN2P17655 700 aa4.23□□□□□ -1.73
VRK3-204ENST00000593912 EPHB4P54760 987 aa4.23□□□□□ -1.73
VRK3-204ENST00000593912 VGLL4Q14135 290 aa4.23□□□□□ -1.73
VRK3-204ENST00000593912 AAK1Q2M2I8 961 aa4.23□□□□□ -1.73
VRK3-204ENST00000593912 IER5LQ5T953 404 aa4.23□□□□□ -1.73
VRK3-204ENST00000593912 TTLL7Q6ZT98 887 aa4.23□□□□□ -1.73
VRK3-204ENST00000593912 HFE2Q6ZVN8 426 aa4.23□□□□□ -1.73
VRK3-204ENST00000593912 DDX46Q7L014 1031 aaKnown RBP4.23□□□□□ -1.73
VRK3-204ENST00000593912 CDAN1Q8IWY9 1227 aa4.23□□□□□ -1.73
VRK3-204ENST00000593912 HELBQ8NG08 1087 aaPredicted RBP4.23□□□□□ -1.73
VRK3-204ENST00000593912 PXYLP1Q8TE99 480 aa4.23□□□□□ -1.73
VRK3-204ENST00000593912 CELF1Q92879 486 aaKnown RBP4.23□□□□□ -1.73
VRK3-204ENST00000593912 FBXW7Q969H0 707 aa4.23□□□□□ -1.73
VRK3-204ENST00000593912 EYA3Q99504 573 aa4.23□□□□□ -1.73
VRK3-204ENST00000593912 TSPYL2Q9H2G4 693 aaPredicted RBP4.23□□□□□ -1.73
VRK3-204ENST00000593912 ZBTB3Q9H5J0 574 aa4.23□□□□□ -1.73
VRK3-204ENST00000593912 PRDM5Q9NQX1 630 aaPredicted RBP4.23□□□□□ -1.73
VRK3-204ENST00000593912 IGSF5Q9NSI5 407 aa4.23□□□□□ -1.73
VRK3-204ENST00000593912 OGDHLQ9ULD0 1010 aa4.23□□□□□ -1.73
VRK3-204ENST00000593912 CEMIPQ8WUJ3 1361 aa4.23□□□□□ -1.73
VRK3-204ENST00000593912 PRRC2BQ5JSZ5 2229 aaKnown RBP4.22□□□□□ -1.73
VRK3-204ENST00000593912 CLRN2A0PK11 232 aa4.22□□□□□ -1.73
VRK3-204ENST00000593912 USP17L3A6NCW0 530 aa4.22□□□□□ -1.73
VRK3-204ENST00000593912 USP17L4A6NCW7 530 aa4.22□□□□□ -1.73
VRK3-204ENST00000593912 ERC2O15083 957 aa4.22□□□□□ -1.73
VRK3-204ENST00000593912 GABBR2O75899 941 aa4.22□□□□□ -1.73
VRK3-204ENST00000593912 UFL1O94874 794 aa4.22□□□□□ -1.73
VRK3-204ENST00000593912 ZIC2O95409 532 aaPredicted RBP4.22□□□□□ -1.73
VRK3-204ENST00000593912 BCRP11274 1271 aa4.22□□□□□ -1.73
VRK3-204ENST00000593912 CETPP11597 493 aa4.22□□□□□ -1.73
VRK3-204ENST00000593912 TCF15Q12870 199 aa4.22□□□□□ -1.73
VRK3-204ENST00000593912 ASCL5Q7RTU5 278 aa4.22□□□□□ -1.73
VRK3-204ENST00000593912 USP17L1Q7RTZ2 530 aa4.22□□□□□ -1.73
VRK3-204ENST00000593912 RIC3Q7Z5B4 369 aa4.22□□□□□ -1.73
VRK3-204ENST00000593912 SH3RF1Q7Z6J0 888 aa4.22□□□□□ -1.73
VRK3-204ENST00000593912 NECTIN2Q92692 538 aa4.22□□□□□ -1.73
VRK3-204ENST00000593912 L3MBTL2Q969R5 705 aa4.22□□□□□ -1.73
VRK3-204ENST00000593912 ZBED3Q96IU2 234 aaPredicted RBP4.22□□□□□ -1.73
VRK3-204ENST00000593912 CARD14Q9BXL6 1004 aa4.22□□□□□ -1.73
VRK3-204ENST00000593912 ZC3H12CQ9C0D7 883 aaKnown RBP4.22□□□□□ -1.73
VRK3-204ENST00000593912 SENP6Q9GZR1 1112 aaPredicted RBP4.22□□□□□ -1.73
VRK3-204ENST00000593912 PRKAG2Q9UGJ0 569 aa4.22□□□□□ -1.73
VRK3-204ENST00000593912 MAP3K15Q6ZN16 1313 aa4.21□□□□□ -1.73
VRK3-204ENST00000593912 FAM186AA6NE01 2351 aa4.21□□□□□ -1.73
VRK3-204ENST00000593912 RIF1Q5UIP0 2472 aaKnown RBP4.21□□□□□ -1.73
VRK3-204ENST00000593912 FRYLO94915 3013 aa4.21□□□□□ -1.74
VRK3-204ENST00000593912 UNCXA6NJT0 531 aa4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms