RNA–Protein interactions for RNA: ENST00000578995.5

SMARCE1-215, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 2

Gene SMARCE1, Length 534 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-215ENST00000578995 CFAP53Q96M91 514 aa5.07□□□□□ -1.6
SMARCE1-215ENST00000578995 CCDC9Q9Y3X0 531 aaKnown RBP5.07□□□□□ -1.6
SMARCE1-215ENST00000578995 KIAA1551Q9HCM1 1747 aa5.06□□□□□ -1.6
SMARCE1-215ENST00000578995 A0A1B0GTH6 734 aa5.06□□□□□ -1.6
SMARCE1-215ENST00000578995 CCER2I3L3R5 266 aa5.06□□□□□ -1.6
SMARCE1-215ENST00000578995 U2SURPO15042 1029 aaKnown RBP5.06□□□□□ -1.6
SMARCE1-215ENST00000578995 ANP32CO43423 234 aa5.06□□□□□ -1.6
SMARCE1-215ENST00000578995 KCNQ2O43526 872 aa5.06□□□□□ -1.6
SMARCE1-215ENST00000578995 TATP17735 454 aaPredicted RBP5.06□□□□□ -1.6
SMARCE1-215ENST00000578995 ADH6P28332 368 aa5.06□□□□□ -1.6
SMARCE1-215ENST00000578995 EFHC2Q5JST6 749 aa5.06□□□□□ -1.6
SMARCE1-215ENST00000578995 PPP2R2DQ66LE6 453 aa5.06□□□□□ -1.6
SMARCE1-215ENST00000578995 RAPGEF4Q8WZA2 1011 aa5.06□□□□□ -1.6
SMARCE1-215ENST00000578995 AFDNP55196 1824 aaKnown RBP5.06□□□□□ -1.6
SMARCE1-215ENST00000578995 KIF13BQ9NQT8 1826 aa5.06□□□□□ -1.6
SMARCE1-215ENST00000578995 ARFGEF2Q9Y6D5 1785 aa5.06□□□□□ -1.6
SMARCE1-215ENST00000578995 ZNF521Q96K83 1311 aa5.05□□□□□ -1.6
SMARCE1-215ENST00000578995 ESPNB1AK53 854 aa5.05□□□□□ -1.6
SMARCE1-215ENST00000578995 EXOC5O00471 708 aa5.05□□□□□ -1.6
SMARCE1-215ENST00000578995 U2AF1L5P0DN76 240 aaPredicted RBP5.05□□□□□ -1.6
SMARCE1-215ENST00000578995 IRAK1P51617 712 aa5.05□□□□□ -1.6
SMARCE1-215ENST00000578995 U2AF1Q01081 240 aaKnown RBP eCLIP5.05□□□□□ -1.6
SMARCE1-215ENST00000578995 CLN3Q13286 438 aa5.05□□□□□ -1.6
SMARCE1-215ENST00000578995 AMOTQ4VCS5 1084 aa5.05□□□□□ -1.6
SMARCE1-215ENST00000578995 DZIP3Q86Y13 1208 aaKnown RBP5.05□□□□□ -1.6
SMARCE1-215ENST00000578995 IL17REQ8NFR9 667 aa5.05□□□□□ -1.6
SMARCE1-215ENST00000578995 MRS2Q9HD23 443 aa5.05□□□□□ -1.6
SMARCE1-215ENST00000578995 NDFIP2Q9NV92 336 aa5.05□□□□□ -1.6
SMARCE1-215ENST00000578995 RNF112Q9ULX5 631 aa5.05□□□□□ -1.6
SMARCE1-215ENST00000578995 NRXN2Q9P2S2 1712 aa5.05□□□□□ -1.6
SMARCE1-215ENST00000578995 BRCA1P38398 1863 aaKnown RBP5.05□□□□□ -1.6
SMARCE1-215ENST00000578995 HEG1Q9ULI3 1381 aa5.04□□□□□ -1.6
SMARCE1-215ENST00000578995 TULP1O00294 542 aaPredicted RBP5.04□□□□□ -1.6
SMARCE1-215ENST00000578995 RNMTO43148 476 aaKnown RBP5.04□□□□□ -1.6
SMARCE1-215ENST00000578995 BNIP3LO60238 219 aa5.04□□□□□ -1.6
SMARCE1-215ENST00000578995 LILRB3O75022 631 aa5.04□□□□□ -1.6
SMARCE1-215ENST00000578995 TMPOP42166 694 aaKnown RBP5.04□□□□□ -1.6
SMARCE1-215ENST00000578995 NFE2L2Q16236 605 aa5.04□□□□□ -1.6
SMARCE1-215ENST00000578995 TUSC1Q2TAM9 212 aa5.04□□□□□ -1.6
SMARCE1-215ENST00000578995 PLEKHO1Q53GL0 409 aaPredicted RBP5.04□□□□□ -1.6
SMARCE1-215ENST00000578995 AKAP4Q5JQC9 854 aa5.04□□□□□ -1.6
SMARCE1-215ENST00000578995 ZNF530Q6P9A1 599 aaPredicted RBP5.04□□□□□ -1.6
SMARCE1-215ENST00000578995 FAM196AQ6ZSG2 479 aa5.04□□□□□ -1.6
SMARCE1-215ENST00000578995 IFNL2Q8IZJ0 200 aa5.04□□□□□ -1.6
SMARCE1-215ENST00000578995 SLC4A9Q96Q91 983 aa5.04□□□□□ -1.6
SMARCE1-215ENST00000578995 OCSTAMPQ9BR26 566 aa5.04□□□□□ -1.6
SMARCE1-215ENST00000578995 LGR6Q9HBX8 967 aa5.04□□□□□ -1.6
SMARCE1-215ENST00000578995 AVENQ9NQS1 362 aaPredicted RBP5.04□□□□□ -1.6
SMARCE1-215ENST00000578995 SPG7Q9UQ90 795 aa5.04□□□□□ -1.6
SMARCE1-215ENST00000578995 NUDCQ9Y266 331 aa5.04□□□□□ -1.6
SMARCE1-215ENST00000578995 RNF114Q9Y508 228 aa5.04□□□□□ -1.6
SMARCE1-215ENST00000578995 LRP5O75197 1615 aa5.04□□□□□ -1.6
SMARCE1-215ENST00000578995 LAMB2P55268 1798 aa5.04□□□□□ -1.6
SMARCE1-215ENST00000578995 DLEC1Q9Y238 1755 aa5.04□□□□□ -1.6
SMARCE1-215ENST00000578995 ANKRD31Q8N7Z5 1873 aa5.03□□□□□ -1.6
SMARCE1-215ENST00000578995 SOCS7O14512 581 aa5.03□□□□□ -1.6
SMARCE1-215ENST00000578995 TRIM37O94972 964 aa5.03□□□□□ -1.6
SMARCE1-215ENST00000578995 PDE3BQ13370 1112 aa5.03□□□□□ -1.6
SMARCE1-215ENST00000578995 QPCTQ16769 361 aa5.03□□□□□ -1.6
SMARCE1-215ENST00000578995 MPRIPQ6WCQ1 1025 aa5.03□□□□□ -1.6
SMARCE1-215ENST00000578995 CCDC146Q8IYE0 955 aa5.03□□□□□ -1.6
SMARCE1-215ENST00000578995 GAS2L2Q8NHY3 880 aa5.03□□□□□ -1.6
SMARCE1-215ENST00000578995 DDX54Q8TDD1 881 aaKnown RBP5.03□□□□□ -1.6
SMARCE1-215ENST00000578995 PIGBQ92521 554 aa5.03□□□□□ -1.6
SMARCE1-215ENST00000578995 RUNDC1Q96C34 613 aa5.03□□□□□ -1.6
SMARCE1-215ENST00000578995 CAMKK2Q96RR4 588 aa5.03□□□□□ -1.6
SMARCE1-215ENST00000578995 KRTAP4-11Q9BYQ6 195 aa5.03□□□□□ -1.6
SMARCE1-215ENST00000578995 GNAT3A8MTJ3 354 aa5.02□□□□□ -1.61
SMARCE1-215ENST00000578995 ERVV-2B6SEH9 535 aa5.02□□□□□ -1.61
SMARCE1-215ENST00000578995 APAF1O14727 1248 aa5.02□□□□□ -1.61
SMARCE1-215ENST00000578995 PLSCR1O15162 318 aa5.02□□□□□ -1.61
SMARCE1-215ENST00000578995 HTATSF1O43719 755 aaKnown RBP5.02□□□□□ -1.61
SMARCE1-215ENST00000578995 ZNF853P0CG23 659 aa5.02□□□□□ -1.61
SMARCE1-215ENST00000578995 TRIM28Q13263 835 aaKnown RBP5.02□□□□□ -1.61
SMARCE1-215ENST00000578995 DCTN1Q14203 1278 aa5.02□□□□□ -1.61
SMARCE1-215ENST00000578995 CCDC27Q2M243 656 aa5.02□□□□□ -1.61
SMARCE1-215ENST00000578995 DEFB132Q7Z7B7 95 aa5.02□□□□□ -1.61
SMARCE1-215ENST00000578995 FCHSD1Q86WN1 690 aa5.02□□□□□ -1.61
SMARCE1-215ENST00000578995 ACSBG1Q96GR2 724 aa5.02□□□□□ -1.61
SMARCE1-215ENST00000578995 THUMPD2Q9BTF0 503 aaKnown RBP5.02□□□□□ -1.61
SMARCE1-215ENST00000578995 RUBCNLQ9H714 662 aa5.02□□□□□ -1.61
SMARCE1-215ENST00000578995 SLC52A2Q9HAB3 445 aa5.02□□□□□ -1.61
SMARCE1-215ENST00000578995 ATG3Q9NT62 314 aa5.02□□□□□ -1.61
SMARCE1-215ENST00000578995 PCMTD2Q9NV79 361 aa5.02□□□□□ -1.61
SMARCE1-215ENST00000578995 PALLDQ8WX93 1383 aa5.02□□□□□ -1.61
SMARCE1-215ENST00000578995 MYH3P11055 1940 aa5.01□□□□□ -1.61
SMARCE1-215ENST00000578995 DDX60Q8IY21 1712 aaKnown RBP5.01□□□□□ -1.61
SMARCE1-215ENST00000578995 C9orf172C9J069 976 aa5.01□□□□□ -1.61
SMARCE1-215ENST00000578995 KCNQ3O43525 872 aa5.01□□□□□ -1.61
SMARCE1-215ENST00000578995 HSP90AB1P08238 724 aaKnown RBP5.01□□□□□ -1.61
SMARCE1-215ENST00000578995 WDR43Q15061 677 aaKnown RBP eCLIP5.01□□□□□ -1.61
SMARCE1-215ENST00000578995 FIGNL1Q6PIW4 674 aa5.01□□□□□ -1.61
SMARCE1-215ENST00000578995 MCM10Q7L590 875 aa5.01□□□□□ -1.61
SMARCE1-215ENST00000578995 CYP2U1Q7Z449 544 aa5.01□□□□□ -1.61
SMARCE1-215ENST00000578995 AMIGO3Q86WK7 504 aa5.01□□□□□ -1.61
SMARCE1-215ENST00000578995 CCDC125Q86Z20 511 aa5.01□□□□□ -1.61
SMARCE1-215ENST00000578995 ASAP1Q9ULH1 1129 aa5.01□□□□□ -1.61
SMARCE1-215ENST00000578995 RRP7AQ9Y3A4 280 aaKnown RBP5.01□□□□□ -1.61
SMARCE1-215ENST00000578995 A0A1B0GUL6 1792 aa5.01□□□□□ -1.61
SMARCE1-215ENST00000578995 CACNA1SQ13698 1873 aa5□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms