RNA–Protein interactions for RNA: ENST00000574755.5

VPS33B-208, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 2,356 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-208ENST00000574755 SBF2Q86WG5 1849 aa16.52■□□□□ 0.23
VPS33B-208ENST00000574755 ELP1O95163 1332 aa16.52■□□□□ 0.23
VPS33B-208ENST00000574755 WDR19Q8NEZ3 1342 aa16.52■□□□□ 0.23
VPS33B-208ENST00000574755 SALL1Q9NSC2 1324 aa16.52■□□□□ 0.23
VPS33B-208ENST00000574755 PATL2C9JE40 543 aaKnown RBP16.51■□□□□ 0.23
VPS33B-208ENST00000574755 PPFIA3O75145 1194 aa16.51■□□□□ 0.23
VPS33B-208ENST00000574755 GYG1P46976 350 aa16.51■□□□□ 0.23
VPS33B-208ENST00000574755 FOSBP53539 338 aa16.51■□□□□ 0.23
VPS33B-208ENST00000574755 UBE4AQ14139 1066 aa16.51■□□□□ 0.23
VPS33B-208ENST00000574755 CELF1Q92879 486 aaKnown RBP16.51■□□□□ 0.23
VPS33B-208ENST00000574755 TRIM44Q96DX7 344 aaPredicted RBP16.51■□□□□ 0.23
VPS33B-208ENST00000574755 NLRP3Q96P20 1036 aa16.51■□□□□ 0.23
VPS33B-208ENST00000574755 ZSCAN16Q9H4T2 348 aaPredicted RBP16.51■□□□□ 0.23
VPS33B-208ENST00000574755 ARMT1Q9H993 441 aa16.51■□□□□ 0.23
VPS33B-208ENST00000574755 TFIP11Q9UBB9 837 aaKnown RBP16.51■□□□□ 0.23
VPS33B-208ENST00000574755 MINPP1Q9UNW1 487 aa16.51■□□□□ 0.23
VPS33B-208ENST00000574755 RESTQ13127 1097 aa16.51■□□□□ 0.23
VPS33B-208ENST00000574755 ARHGEF1Q92888 912 aaKnown RBP16.51■□□□□ 0.23
VPS33B-208ENST00000574755 SPATA32Q96LK8 384 aa16.51■□□□□ 0.23
VPS33B-208ENST00000574755 NAPBQ9H115 298 aa16.51■□□□□ 0.23
VPS33B-208ENST00000574755 GNL3LQ9NVN8 582 aaKnown RBP16.51■□□□□ 0.23
VPS33B-208ENST00000574755 AFF2P51816 1311 aa16.5■□□□□ 0.23
VPS33B-208ENST00000574755 GOLGA8BA8MQT2 603 aa16.5■□□□□ 0.23
VPS33B-208ENST00000574755 CAVIN4Q5BKX8 364 aa16.5■□□□□ 0.23
VPS33B-208ENST00000574755 NAA16Q6N069 864 aaPredicted RBP16.5■□□□□ 0.23
VPS33B-208ENST00000574755 TPTE2Q6XPS3 522 aa16.5■□□□□ 0.23
VPS33B-208ENST00000574755 AMIGO3Q86WK7 504 aa16.5■□□□□ 0.23
VPS33B-208ENST00000574755 VPS37DQ86XT2 251 aa16.5■□□□□ 0.23
VPS33B-208ENST00000574755 IFNL3Q8IZI9 196 aa16.5■□□□□ 0.23
VPS33B-208ENST00000574755 DENND2AQ9ULE3 1009 aa16.5■□□□□ 0.23
VPS33B-208ENST00000574755 CHD4Q14839 1912 aa16.5■□□□□ 0.23
VPS33B-208ENST00000574755 ZNF804BA4D1E1 1349 aa16.5■□□□□ 0.23
VPS33B-208ENST00000574755 WTIPA6NIX2 430 aaPredicted RBP16.5■□□□□ 0.23
VPS33B-208ENST00000574755 DHX16O60231 1041 aaKnown RBP16.5■□□□□ 0.23
VPS33B-208ENST00000574755 LETM1O95202 739 aaPredicted RBP16.5■□□□□ 0.23
VPS33B-208ENST00000574755 ALX1Q15699 326 aa16.5■□□□□ 0.23
VPS33B-208ENST00000574755 ABCF2Q9UG63 623 aa16.5■□□□□ 0.23
VPS33B-208ENST00000574755 ZMYM6O95789 1325 aa16.49■□□□□ 0.23
VPS33B-208ENST00000574755 CARMIL3Q8ND23 1372 aa16.49■□□□□ 0.23
VPS33B-208ENST00000574755 NPHP1O15259 732 aa16.49■□□□□ 0.23
VPS33B-208ENST00000574755 CCDC24Q8N4L8 307 aa16.49■□□□□ 0.23
VPS33B-208ENST00000574755 RNF214Q8ND24 703 aa16.49■□□□□ 0.23
VPS33B-208ENST00000574755 EPB41L4AQ9HCS5 686 aaPredicted RBP16.49■□□□□ 0.23
VPS33B-208ENST00000574755 MYH15Q9Y2K3 1946 aa16.49■□□□□ 0.23
VPS33B-208ENST00000574755 C4AP0C0L4 1744 aa16.49■□□□□ 0.23
VPS33B-208ENST00000574755 C4BP0C0L5 1744 aa16.49■□□□□ 0.23
VPS33B-208ENST00000574755 GOLGA6L4A6NEF3 574 aa16.49■□□□□ 0.23
VPS33B-208ENST00000574755 B4E1Z4 1266 aa16.49■□□□□ 0.23
VPS33B-208ENST00000574755 PPP1R9BQ96SB3 815 aa16.49■□□□□ 0.23
VPS33B-208ENST00000574755 ANGEL1Q9UNK9 670 aaKnown RBP16.49■□□□□ 0.23
VPS33B-208ENST00000574755 GNAT2P19087 354 aa16.48■□□□□ 0.23
VPS33B-208ENST00000574755 RFC4P35249 363 aa16.48■□□□□ 0.23
VPS33B-208ENST00000574755 RPS8P62241 208 aaKnown RBP16.48■□□□□ 0.23
VPS33B-208ENST00000574755 CYB5R4Q7L1T6 521 aa16.48■□□□□ 0.23
VPS33B-208ENST00000574755 LCORLQ8N3X6 602 aa16.48■□□□□ 0.23
VPS33B-208ENST00000574755 MIGA1Q8NAN2 632 aa16.48■□□□□ 0.23
VPS33B-208ENST00000574755 LEO1Q8WVC0 666 aaPredicted RBP16.48■□□□□ 0.23
VPS33B-208ENST00000574755 HPS5Q9UPZ3 1129 aa16.48■□□□□ 0.23
VPS33B-208ENST00000574755 SLC4A4Q9Y6R1 1079 aa16.48■□□□□ 0.23
VPS33B-208ENST00000574755 GSG1L2A8MUP6 293 aa16.48■□□□□ 0.23
VPS33B-208ENST00000574755 CPLX1O14810 134 aa16.48■□□□□ 0.23
VPS33B-208ENST00000574755 RAB11FIP4Q86YS3 637 aa16.48■□□□□ 0.23
VPS33B-208ENST00000574755 NACAP1Q9BZK3 213 aa16.48■□□□□ 0.23
VPS33B-208ENST00000574755 NEDD4P46934 1319 aa16.47■□□□□ 0.23
VPS33B-208ENST00000574755 PNPLA7Q6ZV29 1317 aa16.47■□□□□ 0.23
VPS33B-208ENST00000574755 EP400Q96L91 3159 aa16.47■□□□□ 0.23
VPS33B-208ENST00000574755 TDO2P48775 406 aa16.47■□□□□ 0.23
VPS33B-208ENST00000574755 RAI14Q9P0K7 980 aa16.47■□□□□ 0.23
VPS33B-208ENST00000574755 CFAP45Q9UL16 551 aa16.47■□□□□ 0.23
VPS33B-208ENST00000574755 PRKAB2O43741 272 aa16.46■□□□□ 0.23
VPS33B-208ENST00000574755 FDPSP14324 419 aaKnown RBP16.46■□□□□ 0.23
VPS33B-208ENST00000574755 CYP7A1P22680 504 aa16.46■□□□□ 0.23
VPS33B-208ENST00000574755 HSPA1LP34931 641 aa16.46■□□□□ 0.23
VPS33B-208ENST00000574755 GUCY1B3Q02153 619 aa16.46■□□□□ 0.23
VPS33B-208ENST00000574755 CTDSPL2Q05D32 466 aa16.46■□□□□ 0.23
VPS33B-208ENST00000574755 TRAPPC3LQ5T215 181 aa16.46■□□□□ 0.23
VPS33B-208ENST00000574755 SEPT12Q8IYM1 358 aa16.46■□□□□ 0.23
VPS33B-208ENST00000574755 NKX2-3Q8TAU0 364 aa16.46■□□□□ 0.23
VPS33B-208ENST00000574755 COL1A1P02452 1464 aaPredicted RBP16.46■□□□□ 0.23
VPS33B-208ENST00000574755 CERKQ8TCT0 537 aa16.46■□□□□ 0.23
VPS33B-208ENST00000574755 FAM84BQ96KN1 310 aaPredicted RBP16.46■□□□□ 0.23
VPS33B-208ENST00000574755 TRPC5Q9UL62 973 aaPredicted RBP16.46■□□□□ 0.23
VPS33B-208ENST00000574755 SH2B2O14492 632 aaPredicted RBP16.45■□□□□ 0.22
VPS33B-208ENST00000574755 ONECUT3O60422 494 aaPredicted RBP16.45■□□□□ 0.22
VPS33B-208ENST00000574755 FAM196AQ6ZSG2 479 aa16.45■□□□□ 0.22
VPS33B-208ENST00000574755 TMEM87BQ96K49 555 aa16.45■□□□□ 0.22
VPS33B-208ENST00000574755 INCENPQ9NQS7 918 aa16.45■□□□□ 0.22
VPS33B-208ENST00000574755 MYH13Q9UKX3 1938 aa16.45■□□□□ 0.22
VPS33B-208ENST00000574755 GIMAP6Q6P9H5 292 aa16.45■□□□□ 0.22
VPS33B-208ENST00000574755 CNNM2Q9H8M5 875 aa16.45■□□□□ 0.22
VPS33B-208ENST00000574755 TIAM2Q8IVF5 1701 aa16.45■□□□□ 0.22
VPS33B-208ENST00000574755 CEBPZQ03701 1054 aaKnown RBP16.44■□□□□ 0.22
VPS33B-208ENST00000574755 AKNAD1Q5T1N1 836 aa16.44■□□□□ 0.22
VPS33B-208ENST00000574755 MFSD6Q6ZSS7 791 aa16.44■□□□□ 0.22
VPS33B-208ENST00000574755 ADGRA1Q86SQ6 560 aa16.44■□□□□ 0.22
VPS33B-208ENST00000574755 ORC3Q9UBD5 711 aaPredicted RBP16.44■□□□□ 0.22
VPS33B-208ENST00000574755 KDM4AO75164 1064 aa16.44■□□□□ 0.22
VPS33B-208ENST00000574755 LIG1P18858 919 aa16.44■□□□□ 0.22
VPS33B-208ENST00000574755 METAP2P50579 478 aaKnown RBP eCLIP16.44■□□□□ 0.22
VPS33B-208ENST00000574755 ANKRD2Q9GZV1 360 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms