RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 PHACTR3Q96KR7 559 aa7.77□□□□□ -1.17
VPS53-208ENST00000570650 NUP98P52948 1817 aa7.77□□□□□ -1.17
VPS53-208ENST00000570650 ABCC4O15439 1325 aa7.77□□□□□ -1.17
VPS53-208ENST00000570650 ADM5C9JUS6 153 aa7.76□□□□□ -1.17
VPS53-208ENST00000570650 BBOX1O75936 387 aa7.76□□□□□ -1.17
VPS53-208ENST00000570650 TBC1D10BQ4KMP7 808 aaPredicted RBP7.76□□□□□ -1.17
VPS53-208ENST00000570650 PARP10Q53GL7 1025 aa7.76□□□□□ -1.17
VPS53-208ENST00000570650 CC2D1BQ5T0F9 858 aaKnown RBP7.76□□□□□ -1.17
VPS53-208ENST00000570650 LIAT1Q6ZQX7 453 aa7.76□□□□□ -1.17
VPS53-208ENST00000570650 MCM10Q7L590 875 aa7.76□□□□□ -1.17
VPS53-208ENST00000570650 RASAL3Q86YV0 1011 aa7.76□□□□□ -1.17
VPS53-208ENST00000570650 ZNF34Q8IZ26 560 aa7.76□□□□□ -1.17
VPS53-208ENST00000570650 RSPH6AQ9H0K4 717 aa7.76□□□□□ -1.17
VPS53-208ENST00000570650 ZBTB3Q9H5J0 574 aa7.76□□□□□ -1.17
VPS53-208ENST00000570650 POLR3EQ9NVU0 708 aa7.76□□□□□ -1.17
VPS53-208ENST00000570650 LAMB4A4D0S4 1761 aa7.75□□□□□ -1.17
VPS53-208ENST00000570650 PSMD14O00487 310 aa7.75□□□□□ -1.17
VPS53-208ENST00000570650 RPS12P25398 132 aaKnown RBP7.75□□□□□ -1.17
VPS53-208ENST00000570650 MTMR2Q13614 643 aa7.75□□□□□ -1.17
VPS53-208ENST00000570650 QPCTQ16769 361 aa7.75□□□□□ -1.17
VPS53-208ENST00000570650 SLC10A5Q5PT55 438 aa7.75□□□□□ -1.17
VPS53-208ENST00000570650 FBXO46Q6PJ61 603 aaPredicted RBP7.75□□□□□ -1.17
VPS53-208ENST00000570650 ZNF296Q8WUU4 475 aaPredicted RBP7.75□□□□□ -1.17
VPS53-208ENST00000570650 DDRGK1Q96HY6 314 aa7.75□□□□□ -1.17
VPS53-208ENST00000570650 RRP7AQ9Y3A4 280 aaKnown RBP7.75□□□□□ -1.17
VPS53-208ENST00000570650 V9GY48 417 aaPredicted RBP7.75□□□□□ -1.17
VPS53-208ENST00000570650 POLR2AP24928 1970 aaKnown RBP7.75□□□□□ -1.17
VPS53-208ENST00000570650 HTATSF1O43719 755 aaKnown RBP7.74□□□□□ -1.17
VPS53-208ENST00000570650 EGFRP00533 1210 aa7.74□□□□□ -1.17
VPS53-208ENST00000570650 JUNDP17535 347 aa7.74□□□□□ -1.17
VPS53-208ENST00000570650 SLC19A1P41440 591 aa7.74□□□□□ -1.17
VPS53-208ENST00000570650 CLK2P49760 499 aaKnown RBP7.74□□□□□ -1.17
VPS53-208ENST00000570650 FKBP1BP68106 108 aa7.74□□□□□ -1.17
VPS53-208ENST00000570650 DCTN1Q14203 1278 aa7.74□□□□□ -1.17
VPS53-208ENST00000570650 TAF7Q15545 349 aaPredicted RBP7.74□□□□□ -1.17
VPS53-208ENST00000570650 KIF4BQ2VIQ3 1234 aa7.74□□□□□ -1.17
VPS53-208ENST00000570650 NOM1Q5C9Z4 860 aaKnown RBP7.74□□□□□ -1.17
VPS53-208ENST00000570650 PRR7Q8TB68 274 aa7.74□□□□□ -1.17
VPS53-208ENST00000570650 CDCA5Q96FF9 252 aa7.74□□□□□ -1.17
VPS53-208ENST00000570650 UTP14AQ9BVJ6 771 aaKnown RBP7.74□□□□□ -1.17
VPS53-208ENST00000570650 GGA3Q9NZ52 723 aa7.74□□□□□ -1.17
VPS53-208ENST00000570650 CFAP99D6REC4 459 aa7.73□□□□□ -1.17
VPS53-208ENST00000570650 GPR25O00155 361 aa7.73□□□□□ -1.17
VPS53-208ENST00000570650 PER1O15534 1290 aaPredicted RBP7.73□□□□□ -1.17
VPS53-208ENST00000570650 TBC1D8O95759 1140 aa7.73□□□□□ -1.17
VPS53-208ENST00000570650 MYL6BP14649 208 aa7.73□□□□□ -1.17
VPS53-208ENST00000570650 FXR1P51114 621 aaKnown RBP eCLIP7.73□□□□□ -1.17
VPS53-208ENST00000570650 GRAPQ13588 217 aa7.73□□□□□ -1.17
VPS53-208ENST00000570650 DDX46Q7L014 1031 aaKnown RBP7.73□□□□□ -1.17
VPS53-208ENST00000570650 TMC4Q7Z404 712 aa7.73□□□□□ -1.17
VPS53-208ENST00000570650 GRAPLQ8TC17 118 aaPredicted RBP7.73□□□□□ -1.17
VPS53-208ENST00000570650 PNISRQ8TF01 805 aaKnown RBP7.73□□□□□ -1.17
VPS53-208ENST00000570650 DBNDD1Q9H9R9 158 aa7.73□□□□□ -1.17
VPS53-208ENST00000570650 DUOX1Q9NRD9 1551 aa7.72□□□□□ -1.17
VPS53-208ENST00000570650 PAPPA2Q9BXP8 1791 aa7.72□□□□□ -1.17
VPS53-208ENST00000570650 LILRB3O75022 631 aa7.72□□□□□ -1.17
VPS53-208ENST00000570650 WASHC4Q2M389 1173 aa7.72□□□□□ -1.17
VPS53-208ENST00000570650 TUSC1Q2TAM9 212 aa7.72□□□□□ -1.17
VPS53-208ENST00000570650 SH3D19Q5HYK7 790 aa7.72□□□□□ -1.17
VPS53-208ENST00000570650 CFAP53Q96M91 514 aa7.72□□□□□ -1.17
VPS53-208ENST00000570650 MIS18AQ9NYP9 233 aa7.72□□□□□ -1.17
VPS53-208ENST00000570650 NUDCQ9Y266 331 aa7.72□□□□□ -1.17
VPS53-208ENST00000570650 ERBB4Q15303 1308 aa7.72□□□□□ -1.17
VPS53-208ENST00000570650 SPDYE5A6NIY4 337 aa7.71□□□□□ -1.18
VPS53-208ENST00000570650 ECE2O60344 883 aa7.71□□□□□ -1.18
VPS53-208ENST00000570650 FKTNO75072 461 aa7.71□□□□□ -1.18
VPS53-208ENST00000570650 HCLS1P14317 486 aaPredicted RBP7.71□□□□□ -1.18
VPS53-208ENST00000570650 TM4SF4P48230 202 aa7.71□□□□□ -1.18
VPS53-208ENST00000570650 EIF4A1P60842 406 aaKnown RBP7.71□□□□□ -1.18
VPS53-208ENST00000570650 SKIV2LQ15477 1246 aaKnown RBP7.71□□□□□ -1.18
VPS53-208ENST00000570650 SPRYD7Q5W111 196 aa7.71□□□□□ -1.18
VPS53-208ENST00000570650 INTS3Q68E01 1043 aaKnown RBP7.71□□□□□ -1.18
VPS53-208ENST00000570650 PROCA1Q8NCQ7 364 aaPredicted RBP7.71□□□□□ -1.18
VPS53-208ENST00000570650 IL27Q8NEV9 243 aa7.71□□□□□ -1.18
VPS53-208ENST00000570650 ASTN2O75129 1339 aaPredicted RBP7.71□□□□□ -1.18
VPS53-208ENST00000570650 ANKRD36CQ5JPF3 1778 aa7.71□□□□□ -1.18
VPS53-208ENST00000570650 RTL9Q8NET4 1388 aa7.71□□□□□ -1.18
VPS53-208ENST00000570650 LRRC37AA6NMS7 1700 aa7.7□□□□□ -1.18
VPS53-208ENST00000570650 LAMB2P55268 1798 aa7.7□□□□□ -1.18
VPS53-208ENST00000570650 VIL1P09327 827 aaKnown RBP7.7□□□□□ -1.18
VPS53-208ENST00000570650 U2AF1L5P0DN76 240 aaPredicted RBP7.7□□□□□ -1.18
VPS53-208ENST00000570650 U2AF1Q01081 240 aaKnown RBP eCLIP7.7□□□□□ -1.18
VPS53-208ENST00000570650 SREBF2Q12772 1141 aa7.7□□□□□ -1.18
VPS53-208ENST00000570650 CNGB1Q14028 1251 aaPredicted RBP7.7□□□□□ -1.18
VPS53-208ENST00000570650 HSP90AB3PQ58FF7 597 aa7.7□□□□□ -1.18
VPS53-208ENST00000570650 RTL5Q5HYW3 569 aaPredicted RBP7.7□□□□□ -1.18
VPS53-208ENST00000570650 ANGEL2Q5VTE6 544 aaKnown RBP7.7□□□□□ -1.18
VPS53-208ENST00000570650 EYA3Q99504 573 aa7.7□□□□□ -1.18
VPS53-208ENST00000570650 CFHR5Q9BXR6 569 aa7.7□□□□□ -1.18
VPS53-208ENST00000570650 NSFL1CQ9UNZ2 370 aaKnown RBP7.7□□□□□ -1.18
VPS53-208ENST00000570650 PITPNM2Q9BZ72 1349 aa7.7□□□□□ -1.18
VPS53-208ENST00000570650 CLSPNQ9HAW4 1339 aa7.7□□□□□ -1.18
VPS53-208ENST00000570650 KDM3BQ7LBC6 1761 aa7.69□□□□□ -1.18
VPS53-208ENST00000570650 UBE2Q2LH0YL09 131 aa7.69□□□□□ -1.18
VPS53-208ENST00000570650 ZNF280AP59817 542 aaPredicted RBP7.69□□□□□ -1.18
VPS53-208ENST00000570650 SCARF1Q14162 830 aa7.69□□□□□ -1.18
VPS53-208ENST00000570650 MOB2Q70IA6 237 aa7.69□□□□□ -1.18
VPS53-208ENST00000570650 LRP10Q7Z4F1 713 aa7.69□□□□□ -1.18
VPS53-208ENST00000570650 NLRP10Q86W26 655 aa7.69□□□□□ -1.18
VPS53-208ENST00000570650 NUDT12Q9BQG2 462 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms