RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 UBL7Q96S82 380 aaPredicted RBP4.55□□□□□ -1.68
VPS35-208ENST00000568612 CORO1BQ9BR76 489 aa4.55□□□□□ -1.68
VPS35-208ENST00000568612 SSBP4Q9BWG4 385 aaPredicted RBP4.55□□□□□ -1.68
VPS35-208ENST00000568612 GZF1Q9H116 711 aaPredicted RBP4.55□□□□□ -1.68
VPS35-208ENST00000568612 SOX17Q9H6I2 414 aaPredicted RBP4.55□□□□□ -1.68
VPS35-208ENST00000568612 WWC3Q9ULE0 1092 aa4.55□□□□□ -1.68
VPS35-208ENST00000568612 LOC100289279A0A1B0GTE1 492 aa4.54□□□□□ -1.68
VPS35-208ENST00000568612 CYP11A1P05108 521 aa4.54□□□□□ -1.68
VPS35-208ENST00000568612 P4HBP07237 508 aaKnown RBP4.54□□□□□ -1.68
VPS35-208ENST00000568612 H2AFB1P0C5Y9 115 aa4.54□□□□□ -1.68
VPS35-208ENST00000568612 H2AFB2P0C5Z0 115 aa4.54□□□□□ -1.68
VPS35-208ENST00000568612 ITPKAP23677 461 aa4.54□□□□□ -1.68
VPS35-208ENST00000568612 MAOBP27338 520 aa4.54□□□□□ -1.68
VPS35-208ENST00000568612 FMR1Q06787 632 aaKnown RBP eCLIP4.54□□□□□ -1.683e-7■□□□□ 8.4
VPS35-208ENST00000568612 PDE3AQ14432 1141 aa4.54□□□□□ -1.68
VPS35-208ENST00000568612 POU4F3Q15319 338 aa4.54□□□□□ -1.68
VPS35-208ENST00000568612 ZNF326Q5BKZ1 582 aaKnown RBP4.54□□□□□ -1.68
VPS35-208ENST00000568612 ANKRD34AQ69YU3 496 aa4.54□□□□□ -1.68
VPS35-208ENST00000568612 ALG1LQ6GMV1 187 aa4.54□□□□□ -1.68
VPS35-208ENST00000568612 PRPF40BQ6NWY9 871 aaKnown RBP4.54□□□□□ -1.68
VPS35-208ENST00000568612 DZIP1LQ8IYY4 767 aaKnown RBP4.54□□□□□ -1.68
VPS35-208ENST00000568612 C12orf50Q8NA57 414 aaPredicted RBP4.54□□□□□ -1.68
VPS35-208ENST00000568612 KCNF1Q9H3M0 494 aa4.54□□□□□ -1.68
VPS35-208ENST00000568612 CYP4F12Q9HCS2 524 aa4.54□□□□□ -1.68
VPS35-208ENST00000568612 RAD18Q9NS91 495 aa4.54□□□□□ -1.68
VPS35-208ENST00000568612 ANKRD33BA6NCL7 494 aa4.53□□□□□ -1.68
VPS35-208ENST00000568612 DHX15O43143 795 aaKnown RBP4.53□□□□□ -1.68
VPS35-208ENST00000568612 EIF4EBP3O60516 100 aaPredicted RBP4.53□□□□□ -1.68
VPS35-208ENST00000568612 B3GALT4O96024 378 aa4.53□□□□□ -1.68
VPS35-208ENST00000568612 LDHBP07195 334 aaKnown RBP4.53□□□□□ -1.68
VPS35-208ENST00000568612 RXRBP28702 533 aa4.53□□□□□ -1.68
VPS35-208ENST00000568612 PRSS36Q5K4E3 855 aa4.53□□□□□ -1.68
VPS35-208ENST00000568612 PRR23CQ6ZRP0 262 aa4.53□□□□□ -1.68
VPS35-208ENST00000568612 Q6ZS46 218 aa4.53□□□□□ -1.68
VPS35-208ENST00000568612 GLIS3Q8NEA6 775 aa4.53□□□□□ -1.68
VPS35-208ENST00000568612 CHMP4AQ9BY43 222 aa4.53□□□□□ -1.68
VPS35-208ENST00000568612 ZC3H12CQ9C0D7 883 aaKnown RBP4.53□□□□□ -1.68
VPS35-208ENST00000568612 SPG7Q9UQ90 795 aa4.53□□□□□ -1.68
VPS35-208ENST00000568612 ECEL1O95672 775 aa4.52□□□□□ -1.69
VPS35-208ENST00000568612 DLGAP3O95886 979 aa4.52□□□□□ -1.69
VPS35-208ENST00000568612 BMP3P12645 472 aa4.52□□□□□ -1.69
VPS35-208ENST00000568612 XRCC5P13010 732 aaKnown RBP4.52□□□□□ -1.69
VPS35-208ENST00000568612 DRD2P14416 443 aa4.52□□□□□ -1.69
VPS35-208ENST00000568612 PREPP48147 710 aa4.52□□□□□ -1.69
VPS35-208ENST00000568612 USP11P51784 963 aa4.52□□□□□ -1.69
VPS35-208ENST00000568612 PTPN12Q05209 780 aaKnown RBP4.52□□□□□ -1.69
VPS35-208ENST00000568612 PPP2R3AQ06190 1150 aa4.52□□□□□ -1.69
VPS35-208ENST00000568612 FAAP100Q0VG06 881 aa4.52□□□□□ -1.69
VPS35-208ENST00000568612 AKAP4Q5JQC9 854 aa4.52□□□□□ -1.69
VPS35-208ENST00000568612 EXOSC6Q5RKV6 272 aaKnown RBP4.52□□□□□ -1.69
VPS35-208ENST00000568612 HP1BP3Q5SSJ5 553 aaPredicted RBP4.52□□□□□ -1.69
VPS35-208ENST00000568612 ARMC10Q8N2F6 343 aa4.52□□□□□ -1.69
VPS35-208ENST00000568612 FBF1Q8TES7 1133 aa4.52□□□□□ -1.69
VPS35-208ENST00000568612 ZFYVE1Q9HBF4 777 aa4.52□□□□□ -1.69
VPS35-208ENST00000568612 STOML1Q9UBI4 398 aa4.52□□□□□ -1.69
VPS35-208ENST00000568612 AP4E1Q9UPM8 1137 aa4.52□□□□□ -1.69
VPS35-208ENST00000568612 RAXQ9Y2V3 346 aa4.52□□□□□ -1.69
VPS35-208ENST00000568612 A0A0U1RQG5 324 aaPredicted RBP4.51□□□□□ -1.69
VPS35-208ENST00000568612 SCO2A0A1W2PP80 73 aa4.51□□□□□ -1.69
VPS35-208ENST00000568612 GSTT1P30711 240 aa4.51□□□□□ -1.69
VPS35-208ENST00000568612 DEKP35659 375 aaKnown RBP4.51□□□□□ -1.69
VPS35-208ENST00000568612 RBM10P98175 930 aaKnown RBP4.51□□□□□ -1.69
VPS35-208ENST00000568612 AP3B2Q13367 1082 aa4.51□□□□□ -1.69
VPS35-208ENST00000568612 CCDC27Q2M243 656 aa4.51□□□□□ -1.69
VPS35-208ENST00000568612 UVSSAQ2YD98 709 aa4.51□□□□□ -1.69
VPS35-208ENST00000568612 EAPPQ56P03 285 aaPredicted RBP4.51□□□□□ -1.69
VPS35-208ENST00000568612 RPS26P11Q5JNZ5 115 aaPredicted RBP4.51□□□□□ -1.69
VPS35-208ENST00000568612 ZMYM1Q5SVZ6 1142 aa4.51□□□□□ -1.69
VPS35-208ENST00000568612 TPTE2Q6XPS3 522 aa4.51□□□□□ -1.69
VPS35-208ENST00000568612 FAM46AQ96IP4 442 aaKnown RBP4.51□□□□□ -1.69
VPS35-208ENST00000568612 MYRFLQ96LU7 910 aa4.51□□□□□ -1.69
VPS35-208ENST00000568612 TRIM56Q9BRZ2 755 aaKnown RBP4.51□□□□□ -1.69
VPS35-208ENST00000568612 TMPRSS13Q9BYE2 586 aa4.51□□□□□ -1.69
VPS35-208ENST00000568612 TMEM39AQ9NV64 488 aa4.51□□□□□ -1.69
VPS35-208ENST00000568612 ZBTB7CA1YPR0 619 aa4.5□□□□□ -1.69
VPS35-208ENST00000568612 MEGF11A6BM72 1044 aa4.5□□□□□ -1.69
VPS35-208ENST00000568612 FBXO24O75426 580 aa4.5□□□□□ -1.69
VPS35-208ENST00000568612 CTSBP07858 339 aa4.5□□□□□ -1.69
VPS35-208ENST00000568612 FSTP19883 344 aa4.5□□□□□ -1.69
VPS35-208ENST00000568612 ITGB7P26010 798 aa4.5□□□□□ -1.69
VPS35-208ENST00000568612 SGO2Q562F6 1265 aa4.5□□□□□ -1.69
VPS35-208ENST00000568612 PPP1R3FQ6ZSY5 799 aaPredicted RBP4.5□□□□□ -1.69
VPS35-208ENST00000568612 DYMQ7RTS9 669 aa4.5□□□□□ -1.69
VPS35-208ENST00000568612 FAM20CQ8IXL6 584 aa4.5□□□□□ -1.69
VPS35-208ENST00000568612 SMG8Q8ND04 991 aaKnown RBP4.5□□□□□ -1.69
VPS35-208ENST00000568612 KCNB2Q92953 911 aa4.5□□□□□ -1.69
VPS35-208ENST00000568612 OSBPL7Q9BZF2 842 aa4.5□□□□□ -1.69
VPS35-208ENST00000568612 C12orf49Q9H741 205 aa4.5□□□□□ -1.69
VPS35-208ENST00000568612 CBX8Q9HC52 389 aa4.5□□□□□ -1.69
VPS35-208ENST00000568612 HMX2A2RU54 273 aa4.49□□□□□ -1.69
VPS35-208ENST00000568612 GIPC1O14908 333 aa4.49□□□□□ -1.69
VPS35-208ENST00000568612 PRPF40AO75400 957 aaKnown RBP4.49□□□□□ -1.69
VPS35-208ENST00000568612 USP17L7P0C7H9 530 aa4.49□□□□□ -1.69
VPS35-208ENST00000568612 ADH5P11766 374 aa4.49□□□□□ -1.69
VPS35-208ENST00000568612 LIG1P18858 919 aa4.49□□□□□ -1.69
VPS35-208ENST00000568612 RAB6AP20340 208 aa4.49□□□□□ -1.69
VPS35-208ENST00000568612 EIF4BP23588 611 aaKnown RBP4.49□□□□□ -1.69
VPS35-208ENST00000568612 MAP4P27816 1152 aaKnown RBP4.49□□□□□ -1.69
VPS35-208ENST00000568612 HNRNPUQ00839 825 aaKnown RBP eCLIP4.49□□□□□ -1.69
VPS35-208ENST00000568612 SOX4Q06945 474 aaPredicted RBP4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms