RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 USPL1Q5W0Q7 1092 aa7.59□□□□□ -1.19
VPS35-205ENST00000563984 HGSNATQ68CP4 663 aa7.59□□□□□ -1.19
VPS35-205ENST00000563984 VN1R5Q7Z5H4 357 aa7.59□□□□□ -1.19
VPS35-205ENST00000563984 CCNJLQ8IV13 435 aa7.59□□□□□ -1.19
VPS35-205ENST00000563984 ABI1Q8IZP0 508 aa7.59□□□□□ -1.19
VPS35-205ENST00000563984 FOXD4L4Q8WXT5 416 aaPredicted RBP7.59□□□□□ -1.19
VPS35-205ENST00000563984 SLC7A3Q8WY07 619 aa7.59□□□□□ -1.19
VPS35-205ENST00000563984 LIN7BQ9HAP6 207 aa7.59□□□□□ -1.19
VPS35-205ENST00000563984 SOX1O00570 391 aaPredicted RBP7.58□□□□□ -1.2
VPS35-205ENST00000563984 DHX15O43143 795 aaKnown RBP7.58□□□□□ -1.2
VPS35-205ENST00000563984 NLRP12P59046 1061 aa7.58□□□□□ -1.2
VPS35-205ENST00000563984 IKBKEQ14164 716 aa7.58□□□□□ -1.2
VPS35-205ENST00000563984 KIAA1211Q6ZU35 1233 aa7.58□□□□□ -1.2
VPS35-205ENST00000563984 TMC7Q7Z402 723 aa7.58□□□□□ -1.2
VPS35-205ENST00000563984 CSRNP1Q96S65 589 aa7.58□□□□□ -1.2
VPS35-205ENST00000563984 SOX17Q9H6I2 414 aaPredicted RBP7.58□□□□□ -1.2
VPS35-205ENST00000563984 CDK11AQ9UQ88 783 aaPredicted RBP7.58□□□□□ -1.2
VPS35-205ENST00000563984 A0A096LPE4 126 aa7.57□□□□□ -1.2
VPS35-205ENST00000563984 A0A1W2PPZ6 126 aa7.57□□□□□ -1.2
VPS35-205ENST00000563984 MAPK1P28482 360 aa7.57□□□□□ -1.2
VPS35-205ENST00000563984 RNF43Q68DV7 783 aa7.57□□□□□ -1.2
VPS35-205ENST00000563984 CCDC74AQ96AQ1 378 aa7.57□□□□□ -1.2
VPS35-205ENST00000563984 TCF12Q99081 682 aa7.57□□□□□ -1.2
VPS35-205ENST00000563984 C7orf69Q9H7B7 122 aa7.57□□□□□ -1.2
VPS35-205ENST00000563984 ESRRAP11474 423 aaPredicted RBP7.56□□□□□ -1.2
VPS35-205ENST00000563984 FBLN7Q53RD9 439 aa7.56□□□□□ -1.2
VPS35-205ENST00000563984 TRIM42Q8IWZ5 723 aa7.56□□□□□ -1.2
VPS35-205ENST00000563984 CEP41Q9BYV8 373 aa7.56□□□□□ -1.2
VPS35-205ENST00000563984 CLEC4MQ9H2X3 399 aaPredicted RBP7.56□□□□□ -1.2
VPS35-205ENST00000563984 NPHS2Q9NP85 383 aa7.56□□□□□ -1.2
VPS35-205ENST00000563984 HMX2A2RU54 273 aa7.55□□□□□ -1.2
VPS35-205ENST00000563984 KRTAP9-7A8MTY7 169 aa7.55□□□□□ -1.2
VPS35-205ENST00000563984 METTL12A8MUP2 240 aa7.55□□□□□ -1.2
VPS35-205ENST00000563984 GRIA4P48058 902 aa7.55□□□□□ -1.2
VPS35-205ENST00000563984 UTP4Q969X6 686 aaKnown RBP7.55□□□□□ -1.2
VPS35-205ENST00000563984 DBNDD2Q9BQY9 259 aa7.55□□□□□ -1.2
VPS35-205ENST00000563984 EHD4Q9H223 541 aa7.55□□□□□ -1.2
VPS35-205ENST00000563984 TREHO43280 583 aa7.54□□□□□ -1.2
VPS35-205ENST00000563984 PLCB3Q01970 1234 aa7.54□□□□□ -1.2
VPS35-205ENST00000563984 DSC3Q14574 896 aa7.54□□□□□ -1.2
VPS35-205ENST00000563984 CBLL1Q75N03 491 aa7.54□□□□□ -1.2
VPS35-205ENST00000563984 ZSCAN29Q8IWY8 852 aaPredicted RBP7.54□□□□□ -1.2
VPS35-205ENST00000563984 MEGF11A6BM72 1044 aa7.53□□□□□ -1.2
VPS35-205ENST00000563984 GADD45BO75293 160 aaPredicted RBP7.53□□□□□ -1.2
VPS35-205ENST00000563984 CDK11BP21127 795 aaKnown RBP7.53□□□□□ -1.2
VPS35-205ENST00000563984 ITPKAP23677 461 aa7.53□□□□□ -1.2
VPS35-205ENST00000563984 PTPN12Q05209 780 aaKnown RBP7.53□□□□□ -1.2
VPS35-205ENST00000563984 PCDH1Q08174 1060 aa7.53□□□□□ -1.2
VPS35-205ENST00000563984 TRIM26Q12899 539 aaPredicted RBP7.53□□□□□ -1.2
VPS35-205ENST00000563984 SPRED3Q2MJR0 410 aa7.53□□□□□ -1.2
VPS35-205ENST00000563984 UVSSAQ2YD98 709 aa7.53□□□□□ -1.2
VPS35-205ENST00000563984 PRPF40BQ6NWY9 871 aaKnown RBP7.53□□□□□ -1.2
VPS35-205ENST00000563984 ASIC4Q96FT7 647 aa7.53□□□□□ -1.2
VPS35-205ENST00000563984 RNF208Q9H0X6 261 aa7.53□□□□□ -1.2
VPS35-205ENST00000563984 TRAK1Q9UPV9 953 aa7.53□□□□□ -1.2
VPS35-205ENST00000563984 HOXA10P31260 410 aaPredicted RBP7.52□□□□□ -1.21
VPS35-205ENST00000563984 ANKRD34AQ69YU3 496 aa7.52□□□□□ -1.21
VPS35-205ENST00000563984 SPOCD1Q6ZMY3 1216 aa7.52□□□□□ -1.21
VPS35-205ENST00000563984 SHKBP1Q8TBC3 707 aa7.52□□□□□ -1.21
VPS35-205ENST00000563984 ASB16Q96NS5 453 aa7.52□□□□□ -1.21
VPS35-205ENST00000563984 RUSC1Q9BVN2 902 aa7.52□□□□□ -1.21
VPS35-205ENST00000563984 NLRP2Q9NX02 1062 aa7.52□□□□□ -1.21
VPS35-205ENST00000563984 SART1O43290 800 aaKnown RBP7.51□□□□□ -1.21
VPS35-205ENST00000563984 HMGB1P09429 215 aaKnown RBP7.51□□□□□ -1.21
VPS35-205ENST00000563984 PREPP48147 710 aa7.51□□□□□ -1.21
VPS35-205ENST00000563984 GSTM4Q03013 218 aa7.51□□□□□ -1.21
VPS35-205ENST00000563984 ZNF423Q2M1K9 1284 aa7.51□□□□□ -1.21
VPS35-205ENST00000563984 DDX54Q8TDD1 881 aaKnown RBP7.51□□□□□ -1.21
VPS35-205ENST00000563984 EPS8L3Q8TE67 593 aaKnown RBP7.51□□□□□ -1.21
VPS35-205ENST00000563984 FAM46AQ96IP4 442 aaKnown RBP7.51□□□□□ -1.21
VPS35-205ENST00000563984 ABCB6Q9NP58 842 aa7.51□□□□□ -1.21
VPS35-205ENST00000563984 PPP4R2Q9NY27 417 aa7.51□□□□□ -1.21
VPS35-205ENST00000563984 LOC100289279A0A1B0GTE1 492 aa7.5□□□□□ -1.21
VPS35-205ENST00000563984 TMEM238LA0A1B0GVL6 79 aa7.5□□□□□ -1.21
VPS35-205ENST00000563984 CENPBP07199 599 aaPredicted RBP7.5□□□□□ -1.21
VPS35-205ENST00000563984 ENOX2Q16206 610 aaKnown RBP7.5□□□□□ -1.21
VPS35-205ENST00000563984 LCE5AQ5TCM9 118 aa7.5□□□□□ -1.21
VPS35-205ENST00000563984 USP26Q9BXU7 913 aa7.5□□□□□ -1.21
VPS35-205ENST00000563984 KCNF1Q9H3M0 494 aa7.5□□□□□ -1.21
VPS35-205ENST00000563984 ZNF576Q9H609 170 aa7.5□□□□□ -1.21
VPS35-205ENST00000563984 ZFYVE1Q9HBF4 777 aa7.5□□□□□ -1.21
VPS35-205ENST00000563984 PNMA6FA0A0J9YX94 578 aa7.49□□□□□ -1.21
VPS35-205ENST00000563984 B3GALT4O96024 378 aa7.49□□□□□ -1.21
VPS35-205ENST00000563984 CYP11A1P05108 521 aa7.49□□□□□ -1.21
VPS35-205ENST00000563984 BMP3P12645 472 aa7.49□□□□□ -1.21
VPS35-205ENST00000563984 ITGB5P18084 799 aa7.49□□□□□ -1.21
VPS35-205ENST00000563984 GRM2Q14416 872 aa7.49□□□□□ -1.21
VPS35-205ENST00000563984 TAF7LQ5H9L4 462 aa7.49□□□□□ -1.21
VPS35-205ENST00000563984 RPS26P11Q5JNZ5 115 aaPredicted RBP7.49□□□□□ -1.21
VPS35-205ENST00000563984 EXOSC6Q5RKV6 272 aaKnown RBP7.49□□□□□ -1.21
VPS35-205ENST00000563984 FDX2Q6P4F2 183 aa7.49□□□□□ -1.21
VPS35-205ENST00000563984 GLIS3Q8NEA6 775 aa7.49□□□□□ -1.21
VPS35-205ENST00000563984 MYRFLQ96LU7 910 aa7.49□□□□□ -1.21
VPS35-205ENST00000563984 TMPRSS13Q9BYE2 586 aa7.49□□□□□ -1.21
VPS35-205ENST00000563984 NRSN2Q9GZP1 204 aa7.49□□□□□ -1.21
VPS35-205ENST00000563984 LOC105371045A0A1W2PR82 267 aa7.48□□□□□ -1.21
VPS35-205ENST00000563984 FMR1Q06787 632 aaKnown RBP eCLIP7.48□□□□□ -1.213e-7■□□□□ 8.4
VPS35-205ENST00000563984 NUTM2GQ5VZR2 741 aa7.48□□□□□ -1.21
VPS35-205ENST00000563984 NFXL1Q6ZNB6 911 aa7.48□□□□□ -1.21
VPS35-205ENST00000563984 AEBP1Q8IUX7 1158 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms