RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 BTDP43251 543 aa10.77□□□□□ -0.69
VPS39-205ENST00000562258 HEATR3Q7Z4Q2 680 aa10.77□□□□□ -0.69
VPS39-205ENST00000562258 CUL5Q93034 780 aa10.77□□□□□ -0.69
VPS39-205ENST00000562258 SCAF8Q9UPN6 1271 aaKnown RBP10.77□□□□□ -0.69
VPS39-205ENST00000562258 DDX11L8A8MPP1 907 aa10.76□□□□□ -0.69
VPS39-205ENST00000562258 APOBRQ0VD83 1088 aa10.76□□□□□ -0.69
VPS39-205ENST00000562258 RC3H1Q5TC82 1133 aaKnown RBP10.76□□□□□ -0.69
VPS39-205ENST00000562258 R3HCC1Q9Y3T6 440 aaKnown RBP10.76□□□□□ -0.69
VPS39-205ENST00000562258 IQGAP1P46940 1657 aa10.76□□□□□ -0.69
VPS39-205ENST00000562258 DPEP1P16444 411 aa10.76□□□□□ -0.69
VPS39-205ENST00000562258 DEKP35659 375 aaKnown RBP10.76□□□□□ -0.69
VPS39-205ENST00000562258 MIGA2Q7L4E1 593 aa10.76□□□□□ -0.69
VPS39-205ENST00000562258 RTKN2Q8IZC4 609 aa10.76□□□□□ -0.69
VPS39-205ENST00000562258 MYL10Q9BUA6 226 aa10.76□□□□□ -0.69
VPS39-205ENST00000562258 BEGAINQ9BUH8 593 aa10.76□□□□□ -0.69
VPS39-205ENST00000562258 BSDC1Q9NW68 430 aaPredicted RBP10.76□□□□□ -0.69
VPS39-205ENST00000562258 SLFNL1Q499Z3 407 aa10.76□□□□□ -0.69
VPS39-205ENST00000562258 INTS5Q6P9B9 1019 aaKnown RBP10.76□□□□□ -0.69
VPS39-205ENST00000562258 HMG20BQ9P0W2 317 aa10.76□□□□□ -0.69
VPS39-205ENST00000562258 PPLO60437 1756 aa10.75□□□□□ -0.69
VPS39-205ENST00000562258 DYNLL1P63167 89 aaKnown RBP10.75□□□□□ -0.69
VPS39-205ENST00000562258 RTN1Q16799 776 aa10.75□□□□□ -0.69
VPS39-205ENST00000562258 OLFM4Q6UX06 510 aa10.75□□□□□ -0.69
VPS39-205ENST00000562258 SIRT2Q8IXJ6 389 aa10.75□□□□□ -0.69
VPS39-205ENST00000562258 RNF214Q8ND24 703 aa10.75□□□□□ -0.69
VPS39-205ENST00000562258 ZNF396Q96N95 335 aaPredicted RBP10.75□□□□□ -0.69
VPS39-205ENST00000562258 TANGO6Q9C0B7 1094 aa10.75□□□□□ -0.69
VPS39-205ENST00000562258 CNNM2Q9H8M5 875 aa10.75□□□□□ -0.69
VPS39-205ENST00000562258 KINO60870 393 aaKnown RBP10.75□□□□□ -0.69
VPS39-205ENST00000562258 SP4Q02446 784 aa10.75□□□□□ -0.69
VPS39-205ENST00000562258 WASF1Q92558 559 aa10.75□□□□□ -0.69
VPS39-205ENST00000562258 SAMM50Q9Y512 469 aa10.75□□□□□ -0.69
VPS39-205ENST00000562258 MED14O60244 1454 aa10.75□□□□□ -0.69
VPS39-205ENST00000562258 GYS1P13807 737 aa10.75□□□□□ -0.69
VPS39-205ENST00000562258 PRDX5P30044 214 aa10.75□□□□□ -0.69
VPS39-205ENST00000562258 TFAP4Q01664 338 aa10.75□□□□□ -0.69
VPS39-205ENST00000562258 NEURL4Q96JN8 1562 aa10.75□□□□□ -0.69
VPS39-205ENST00000562258 GDPD2Q9HCC8 539 aa10.75□□□□□ -0.69
VPS39-205ENST00000562258 COL5A2P05997 1499 aaPredicted RBP10.74□□□□□ -0.69
VPS39-205ENST00000562258 A0A0D9SFI3 127 aa10.74□□□□□ -0.69
VPS39-205ENST00000562258 hCG_1642624A0A1W2PR95 340 aa10.74□□□□□ -0.69
VPS39-205ENST00000562258 KRT85P78386 507 aa10.74□□□□□ -0.69
VPS39-205ENST00000562258 RASGRF1Q13972 1273 aa10.74□□□□□ -0.69
VPS39-205ENST00000562258 VTI1AQ96AJ9 217 aa10.74□□□□□ -0.69
VPS39-205ENST00000562258 ZBTB12Q9Y330 459 aaPredicted RBP10.74□□□□□ -0.69
VPS39-205ENST00000562258 WDR33Q9C0J8 1336 aaKnown RBP10.74□□□□□ -0.69
VPS39-205ENST00000562258 PPP1R12BO60237 982 aaPredicted RBP10.74□□□□□ -0.69
VPS39-205ENST00000562258 HOMER2Q9NSB8 354 aa10.74□□□□□ -0.69
VPS39-205ENST00000562258 HOOK1Q9UJC3 728 aaKnown RBP10.74□□□□□ -0.69
VPS39-205ENST00000562258 CSADQ9Y600 493 aa10.74□□□□□ -0.69
VPS39-205ENST00000562258 TNFAIP1Q13829 316 aa10.74□□□□□ -0.69
VPS39-205ENST00000562258 PALD1Q9ULE6 856 aa10.74□□□□□ -0.69
VPS39-205ENST00000562258 UBR1Q8IWV7 1749 aa10.74□□□□□ -0.69
VPS39-205ENST00000562258 SIGLEC1Q9BZZ2 1709 aa10.74□□□□□ -0.69
VPS39-205ENST00000562258 USP42Q9H9J4 1324 aaKnown RBP10.73□□□□□ -0.69
VPS39-205ENST00000562258 PTMSP20962 102 aa10.73□□□□□ -0.69
VPS39-205ENST00000562258 CC2D2BQ6DHV5 1058 aa10.73□□□□□ -0.69
VPS39-205ENST00000562258 SASS6Q6UVJ0 657 aa10.73□□□□□ -0.69
VPS39-205ENST00000562258 JMYQ8N9B5 988 aa10.73□□□□□ -0.69
VPS39-205ENST00000562258 SMCR8Q8TEV9 937 aaPredicted RBP10.73□□□□□ -0.69
VPS39-205ENST00000562258 SCLT1Q96NL6 688 aa10.73□□□□□ -0.69
VPS39-205ENST00000562258 UIMC1Q96RL1 719 aa10.73□□□□□ -0.69
VPS39-205ENST00000562258 CLIP2Q9UDT6 1046 aa10.73□□□□□ -0.69
VPS39-205ENST00000562258 USP17L3A6NCW0 530 aa10.73□□□□□ -0.69
VPS39-205ENST00000562258 USP17L4A6NCW7 530 aa10.73□□□□□ -0.69
VPS39-205ENST00000562258 USP17L1Q7RTZ2 530 aa10.73□□□□□ -0.69
VPS39-205ENST00000562258 CSRNP1Q96S65 589 aa10.73□□□□□ -0.69
VPS39-205ENST00000562258 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.73□□□□□ -0.69
VPS39-205ENST00000562258 CAVIN1Q6NZI2 390 aaKnown RBP10.73□□□□□ -0.69
VPS39-205ENST00000562258 FCHSD1Q86WN1 690 aa10.73□□□□□ -0.69
VPS39-205ENST00000562258 SPATA32Q96LK8 384 aa10.73□□□□□ -0.69
VPS39-205ENST00000562258 CD209Q9NNX6 404 aa10.73□□□□□ -0.69
VPS39-205ENST00000562258 HELLSQ9NRZ9 838 aa10.73□□□□□ -0.69
VPS39-205ENST00000562258 LRRC4BQ9NT99 713 aa10.73□□□□□ -0.69
VPS39-205ENST00000562258 ADCY9O60503 1353 aa10.73□□□□□ -0.69
VPS39-205ENST00000562258 PRKAB2O43741 272 aa10.73□□□□□ -0.69
VPS39-205ENST00000562258 USP17L8P0C7I0 530 aa10.73□□□□□ -0.69
VPS39-205ENST00000562258 USP48Q86UV5 1035 aa10.73□□□□□ -0.69
VPS39-205ENST00000562258 TBC1D2Q9BYX2 928 aa10.73□□□□□ -0.69
VPS39-205ENST00000562258 TDRD3Q9H7E2 651 aaKnown RBP10.73□□□□□ -0.69
VPS39-205ENST00000562258 GJB2P29033 226 aa10.72□□□□□ -0.69
VPS39-205ENST00000562258 SLC1A4P43007 532 aa10.72□□□□□ -0.69
VPS39-205ENST00000562258 GPSM2P81274 684 aa10.72□□□□□ -0.69
VPS39-205ENST00000562258 TMC4Q7Z404 712 aa10.72□□□□□ -0.69
VPS39-205ENST00000562258 PDILTQ8N807 584 aa10.72□□□□□ -0.69
VPS39-205ENST00000562258 CNKSR2Q8WXI2 1034 aa10.72□□□□□ -0.69
VPS39-205ENST00000562258 LIG1P18858 919 aa10.72□□□□□ -0.69
VPS39-205ENST00000562258 NAPAP54920 295 aa10.72□□□□□ -0.69
VPS39-205ENST00000562258 PDIA6Q15084 440 aa10.72□□□□□ -0.69
VPS39-205ENST00000562258 DHX32Q7L7V1 743 aaKnown RBP10.72□□□□□ -0.69
VPS39-205ENST00000562258 ZNF34Q8IZ26 560 aa10.72□□□□□ -0.69
VPS39-205ENST00000562258 SPICE1Q8N0Z3 855 aa10.72□□□□□ -0.69
VPS39-205ENST00000562258 TMTC2Q8N394 836 aa10.72□□□□□ -0.69
VPS39-205ENST00000562258 PAGR1Q9BTK6 254 aa10.72□□□□□ -0.69
VPS39-205ENST00000562258 NCOA5Q9HCD5 579 aaKnown RBP10.72□□□□□ -0.69
VPS39-205ENST00000562258 SH2B1Q9NRF2 756 aaPredicted RBP10.72□□□□□ -0.69
VPS39-205ENST00000562258 SGSM2O43147 1006 aa10.72□□□□□ -0.69
VPS39-205ENST00000562258 MYCP01106 439 aaPredicted RBP10.72□□□□□ -0.69
VPS39-205ENST00000562258 SLC4A9Q96Q91 983 aa10.72□□□□□ -0.69
VPS39-205ENST00000562258 TMOD4Q9NZQ9 345 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms