RNA–Protein interactions for RNA: ENST00000561431.1

LRRC28-222, Transcript of leucine rich repeat containing 28, human

TSL 3

Gene LRRC28, Length 754 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LRRC28-222	ENST00000561431	TTC9	Q92623	222 aa		6.34	□□□□□ -1.39
LRRC28-222	ENST00000561431	LOC102724428	A0A0B4J2F2	783 aa		6.33	□□□□□ -1.4
LRRC28-222	ENST00000561431		F8W735	103 aa	Predicted RBP	6.33	□□□□□ -1.4
LRRC28-222	ENST00000561431	GIPC1	O14908	333 aa		6.33	□□□□□ -1.4
LRRC28-222	ENST00000561431	EIF5B	O60841	1220 aa	Known RBP	6.33	□□□□□ -1.4
LRRC28-222	ENST00000561431	SIK1	P57059	783 aa		6.33	□□□□□ -1.4
LRRC28-222	ENST00000561431	DAB2	P98082	770 aa		6.33	□□□□□ -1.4
LRRC28-222	ENST00000561431	ELMSAN1	Q6PJG2	1045 aa		6.33	□□□□□ -1.4
LRRC28-222	ENST00000561431	TMC4	Q7Z404	712 aa		6.33	□□□□□ -1.4
LRRC28-222	ENST00000561431	TMEM130	Q8N3G9	435 aa		6.33	□□□□□ -1.4
LRRC28-222	ENST00000561431	TRPM4	Q8TD43	1214 aa		6.33	□□□□□ -1.4
LRRC28-222	ENST00000561431	OSMR	Q99650	979 aa		6.33	□□□□□ -1.4
LRRC28-222	ENST00000561431	LATS2	Q9NRM7	1088 aa		6.33	□□□□□ -1.4
LRRC28-222	ENST00000561431	RNF19A	Q9NV58	838 aa		6.33	□□□□□ -1.4
LRRC28-222	ENST00000561431	URB2	Q14146	1524 aa	Known RBP	6.33	□□□□□ -1.4
LRRC28-222	ENST00000561431	GPLD1	P80108	840 aa		6.32	□□□□□ -1.4
LRRC28-222	ENST00000561431		Q6ZS46	218 aa		6.32	□□□□□ -1.4
LRRC28-222	ENST00000561431	BCO2	Q9BYV7	579 aa		6.32	□□□□□ -1.4
LRRC28-222	ENST00000561431	MRPL18	Q9H0U6	180 aa	Known RBP	6.32	□□□□□ -1.4
LRRC28-222	ENST00000561431	LIN7B	Q9HAP6	207 aa		6.32	□□□□□ -1.4
LRRC28-222	ENST00000561431	SALL4	Q9UJQ4	1053 aa		6.32	□□□□□ -1.4
LRRC28-222	ENST00000561431	TRAK1	Q9UPV9	953 aa		6.32	□□□□□ -1.4
LRRC28-222	ENST00000561431	AK5	Q9Y6K8	562 aa		6.32	□□□□□ -1.4
LRRC28-222	ENST00000561431		A0A1W2PP55	124 aa		6.31	□□□□□ -1.4
LRRC28-222	ENST00000561431	GSC2	O15499	205 aa		6.31	□□□□□ -1.4
LRRC28-222	ENST00000561431	SMNDC1	O75940	238 aa	Known RBP eCLIP	6.31	□□□□□ -1.4
LRRC28-222	ENST00000561431	IGLV1-40	P01703	118 aa		6.31	□□□□□ -1.4
LRRC28-222	ENST00000561431	COL13A1	Q5TAT6	717 aa	Predicted RBP	6.31	□□□□□ -1.4
LRRC28-222	ENST00000561431	NXPE4	Q6UWF7	544 aa		6.31	□□□□□ -1.4
LRRC28-222	ENST00000561431	TMEM87A	Q8NBN3	555 aa		6.31	□□□□□ -1.4
LRRC28-222	ENST00000561431	ASAP3	Q8TDY4	903 aa		6.31	□□□□□ -1.4
LRRC28-222	ENST00000561431	KIAA1522	Q9P206	1035 aa	Predicted RBP	6.31	□□□□□ -1.4
LRRC28-222	ENST00000561431	RAX	Q9Y2V3	346 aa		6.31	□□□□□ -1.4
LRRC28-222	ENST00000561431	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	6.31	□□□□□ -1.4
LRRC28-222	ENST00000561431	TRPA1	O75762	1119 aa		6.3	□□□□□ -1.4
LRRC28-222	ENST00000561431	SPINK2	P20155	84 aa		6.3	□□□□□ -1.4
LRRC28-222	ENST00000561431	CEP135	Q66GS9	1140 aa		6.3	□□□□□ -1.4
LRRC28-222	ENST00000561431	ZKSCAN3	Q9BRR0	538 aa		6.3	□□□□□ -1.4
LRRC28-222	ENST00000561431	BACH2	Q9BYV9	841 aa		6.3	□□□□□ -1.4
LRRC28-222	ENST00000561431	SRCIN1	Q9C0H9	1055 aa		6.3	□□□□□ -1.4
LRRC28-222	ENST00000561431	SMG9	Q9H0W8	520 aa	Known RBP	6.3	□□□□□ -1.4
LRRC28-222	ENST00000561431	C12orf49	Q9H741	205 aa		6.3	□□□□□ -1.4
LRRC28-222	ENST00000561431	PDE2A	O00408	941 aa	Predicted RBP	6.29	□□□□□ -1.4
LRRC28-222	ENST00000561431	KIF4A	O95239	1232 aa		6.29	□□□□□ -1.4
LRRC28-222	ENST00000561431	USP17L7	P0C7H9	530 aa		6.29	□□□□□ -1.4
LRRC28-222	ENST00000561431	ACPP	P15309	386 aa		6.29	□□□□□ -1.4
LRRC28-222	ENST00000561431	FCGRT	P55899	365 aa		6.29	□□□□□ -1.4
LRRC28-222	ENST00000561431	GRM2	Q14416	872 aa		6.29	□□□□□ -1.4
LRRC28-222	ENST00000561431	KIAA0319	Q5VV43	1072 aa		6.29	□□□□□ -1.4
LRRC28-222	ENST00000561431	DTHD1	Q6ZMT9	781 aa		6.29	□□□□□ -1.4
LRRC28-222	ENST00000561431	ZDHHC13	Q8IUH4	622 aa		6.29	□□□□□ -1.4
LRRC28-222	ENST00000561431	CEP120	Q8N960	986 aa		6.29	□□□□□ -1.4
LRRC28-222	ENST00000561431	PLD4	Q96BZ4	506 aa		6.29	□□□□□ -1.4
LRRC28-222	ENST00000561431	RASSF4	Q9H2L5	321 aa		6.29	□□□□□ -1.4
LRRC28-222	ENST00000561431	FAM8A1	Q9UBU6	413 aa		6.29	□□□□□ -1.4
LRRC28-222	ENST00000561431	AKAP2	Q9Y2D5	859 aa		6.29	□□□□□ -1.4
LRRC28-222	ENST00000561431	HOXD8	P13378	290 aa	Predicted RBP	6.28	□□□□□ -1.4
LRRC28-222	ENST00000561431	GSTT1	P30711	240 aa		6.28	□□□□□ -1.4
LRRC28-222	ENST00000561431	ATP11A	P98196	1134 aa		6.28	□□□□□ -1.4
LRRC28-222	ENST00000561431	PEAR1	Q5VY43	1037 aa	Predicted RBP	6.28	□□□□□ -1.4
LRRC28-222	ENST00000561431	AGGF1	Q8N302	714 aa	eCLIP	6.28	□□□□□ -1.4
LRRC28-222	ENST00000561431	PBX4	Q9BYU1	374 aa		6.28	□□□□□ -1.4
LRRC28-222	ENST00000561431	OSBPL7	Q9BZF2	842 aa		6.28	□□□□□ -1.4
LRRC28-222	ENST00000561431	DZANK1	Q9NVP4	752 aa		6.28	□□□□□ -1.4
LRRC28-222	ENST00000561431	TOPBP1	Q92547	1522 aa		6.27	□□□□□ -1.41
LRRC28-222	ENST00000561431	GLB1	P16278	677 aa		6.27	□□□□□ -1.41
LRRC28-222	ENST00000561431	VAMP1	P23763	118 aa		6.27	□□□□□ -1.41
LRRC28-222	ENST00000561431	MRPL58	Q14197	206 aa	Known RBP	6.27	□□□□□ -1.41
LRRC28-222	ENST00000561431	GDF6	Q6KF10	455 aa	Predicted RBP	6.27	□□□□□ -1.41
LRRC28-222	ENST00000561431	CRELD1	Q96HD1	420 aa		6.27	□□□□□ -1.41
LRRC28-222	ENST00000561431	UBL7	Q96S82	380 aa	Predicted RBP	6.27	□□□□□ -1.41
LRRC28-222	ENST00000561431	LACRT	Q9GZZ8	138 aa		6.27	□□□□□ -1.41
LRRC28-222	ENST00000561431	STOML1	Q9UBI4	398 aa		6.27	□□□□□ -1.41
LRRC28-222	ENST00000561431	TTF2	Q9UNY4	1162 aa	Known RBP	6.27	□□□□□ -1.41
LRRC28-222	ENST00000561431	DNMBP	Q6XZF7	1577 aa		6.27	□□□□□ -1.41
LRRC28-222	ENST00000561431	TMEM238L	A0A1B0GVL6	79 aa		6.26	□□□□□ -1.41
LRRC28-222	ENST00000561431	SCAMP3	O14828	347 aa	Known RBP	6.26	□□□□□ -1.41
LRRC28-222	ENST00000561431	TCF3	P15923	654 aa		6.26	□□□□□ -1.41
LRRC28-222	ENST00000561431	PTPRA	P18433	802 aa		6.26	□□□□□ -1.41
LRRC28-222	ENST00000561431	JAG1	P78504	1218 aa		6.26	□□□□□ -1.41
LRRC28-222	ENST00000561431	SETDB1	Q15047	1291 aa		6.26	□□□□□ -1.41
LRRC28-222	ENST00000561431	DTX1	Q86Y01	620 aa		6.26	□□□□□ -1.41
LRRC28-222	ENST00000561431	KRTAP4-2	Q9BYR5	136 aa		6.26	□□□□□ -1.41
LRRC28-222	ENST00000561431	ZFYVE1	Q9HBF4	777 aa		6.26	□□□□□ -1.41
LRRC28-222	ENST00000561431	METTL12	A8MUP2	240 aa		6.25	□□□□□ -1.41
LRRC28-222	ENST00000561431	XRCC5	P13010	732 aa	Known RBP	6.25	□□□□□ -1.41
LRRC28-222	ENST00000561431	CDC25B	P30305	580 aa		6.25	□□□□□ -1.41
LRRC28-222	ENST00000561431	CABP4	P57796	275 aa		6.25	□□□□□ -1.41
LRRC28-222	ENST00000561431	NFIA	Q12857	509 aa		6.25	□□□□□ -1.41
LRRC28-222	ENST00000561431	TAF1C	Q15572	869 aa	Predicted RBP	6.25	□□□□□ -1.41
LRRC28-222	ENST00000561431	INTS5	Q6P9B9	1019 aa	Known RBP	6.25	□□□□□ -1.41
LRRC28-222	ENST00000561431	ZC3HAV1	Q7Z2W4	902 aa	Known RBP	6.25	□□□□□ -1.41
LRRC28-222	ENST00000561431	CCNJL	Q8IV13	435 aa		6.25	□□□□□ -1.41
LRRC28-222	ENST00000561431	ARMC10	Q8N2F6	343 aa		6.25	□□□□□ -1.41
LRRC28-222	ENST00000561431	TMEM102	Q8N9M5	508 aa	Predicted RBP	6.25	□□□□□ -1.41
LRRC28-222	ENST00000561431	NXPE3	Q969Y0	559 aa		6.25	□□□□□ -1.41
LRRC28-222	ENST00000561431	HHIP	Q96QV1	700 aa		6.25	□□□□□ -1.41
LRRC28-222	ENST00000561431	POP1	Q99575	1024 aa	Known RBP	6.25	□□□□□ -1.41
LRRC28-222	ENST00000561431	SRA1	Q9HD15	236 aa	Known RBP	6.25	□□□□□ -1.41
LRRC28-222	ENST00000561431	ADGRE2	Q9UHX3	823 aa		6.25	□□□□□ -1.41

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